Rmu_co8326617.1_g000001

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8326617.1
OG0000251
Physical Location & Seq
Reverse (-)
43 .. 393
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8326617.1_g000001.1.cds

Sequence Viewer

Length: 351 bp
atggctgcaaagaaagttatagcaatatgtcaatccggaggggacttcgtgacggataaggatgggagtttatcgtacagtggcggagacgcgtatgcagttgacattgatcagcaaactctgctgagtgatttcaagtctgaaatagcggagatgtttagctgtagcgctgatacaatgtcgctcaagtatttccttccgggcaataagaagacgctcattacaatctctaaagataaggacctgcagcggatggtcaatttcctgggggattcggtcagtgtggatgtctttgtcatctcggaggaaactgctgctcgaaatacatccaacatgcctgctagtaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE PB1 SWIM

Protein Analysis

116

Amino Acids

12.55

Weight (kDa)

4.65

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 252
AccII CGCG 1 cut(s) 92
AccIII TCCGGA 1 cut(s) 35
AciI CCGC 3 cut(s) 84, 149, 250
AfaI GTAC 1 cut(s) 77
AfeI AGCGCT 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 90
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 81
Aor13HI TCCGGA 1 cut(s) 35
Aor51HI AGCGCT 1 cut(s) 169
ApeKI GCWGC 3 cut(s) 5, 247, 314
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 241
AsuC2I CCSGG 1 cut(s) 201
AvaII GGWCC 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 218
BbvI GCAGC 2 cut(s) 259, 301
BccI CCATC 2 cut(s) 56, 247
BciT130I CCWGG 1 cut(s) 266
BclI TGATCA 1 cut(s) 109
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 2 cut(s) 163, 245
BfoI RGCGCY 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 252
BisI GCNGC 3 cut(s) 6, 248, 315
BlsI GCNGC 3 cut(s) 7, 249, 316
Bme1390I CCNGG 2 cut(s) 201, 266
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmrFI CCNGG 2 cut(s) 201, 266
BpiI GAAGAC 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 265
BsaWI WCCGGW 1 cut(s) 35
BseAI TCCGGA 1 cut(s) 35
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 4 cut(s) 67, 258, 292, 326
BseMII CTCAG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 259, 301
Bsh1236I CGCG 1 cut(s) 92
BsiSI CCGG 2 cut(s) 36, 200
BslFI GGGAC 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 81
BsmBI CGTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 56
Bsp13I TCCGGA 1 cut(s) 35
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 3 cut(s) 84, 149, 250
BspCNI CTCAG 1 cut(s) 117
BspEI TCCGGA 1 cut(s) 35
BspFNI CGCG 1 cut(s) 92
BspMAI CTGCAG 1 cut(s) 249
BspMI ACCTGC 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 80
BstAPI GCANNNNNTGC 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 1 cut(s) 125
BstF5I GGATG 4 cut(s) 67, 258, 292, 326
BstFNI CGCG 1 cut(s) 92
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 1 cut(s) 266
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 2 cut(s) 199, 264
BstSFI CTRYAG 2 cut(s) 163, 245
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 2 cut(s) 259, 301
BstV2I GAAGAC 1 cut(s) 218
BtsCI GGATG 4 cut(s) 67, 258, 292, 326
BtsIMutI CAGTG 2 cut(s) 85, 286
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 339
CfoI GCGC 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 241
CseI GACGC 2 cut(s) 98, 223
Csp6I GTAC 1 cut(s) 76
CviAII CATG 1 cut(s) 334
CviJI RGCY 2 cut(s) 5, 162
CviKI_1 RGCY 2 cut(s) 5, 162
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 1 cut(s) 125
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
EciI GGCGGA 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 241
Eco47III AGCGCT 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 1 cut(s) 337
FaiI YATR 4 cut(s) 20, 28, 96, 335
FaqI GGGAC 1 cut(s) 56
FatI CATG 1 cut(s) 333
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 3 cut(s) 6, 248, 315
FokI GGATG 4 cut(s) 74, 265, 299, 313
Fsp4HI GCNGC 3 cut(s) 6, 248, 315
FspBI CTAG 1 cut(s) 342
GlaI GCGC 1 cut(s) 169
GluI GCNGC 3 cut(s) 6, 248, 315
HaeII RGCGCY 1 cut(s) 171
HapII CCGG 2 cut(s) 36, 200
HgaI GACGC 2 cut(s) 98, 223
HhaI GCGC 1 cut(s) 170
Hin1II CATG 1 cut(s) 337
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 1 cut(s) 272
HpaII CCGG 2 cut(s) 36, 200
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 142, 304
Hpy188III TCNNGA 2 cut(s) 36, 49
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 3 cut(s) 8, 98, 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 1 cut(s) 125
Hsp92II CATG 1 cut(s) 337
HspAI GCGC 1 cut(s) 168
Kpn2I TCCGGA 1 cut(s) 35
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 5 cut(s) 49, 213, 251, 257, 278
Lsp1109I GCAGC 2 cut(s) 259, 301
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 1 cut(s) 223
MluCI AATT 1 cut(s) 259
MluI ACGCGT 1 cut(s) 90
MnlI CCTC 2 cut(s) 32, 298
MroI TCCGGA 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 250
MspI CCGG 2 cut(s) 36, 200
MspR9I CCNGG 2 cut(s) 201, 266
MvaI CCWGG 1 cut(s) 266
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 121
NciI CCSGG 1 cut(s) 201
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 337
NmuCI GTSAC 1 cut(s) 49
NspI RCATGY 1 cut(s) 337
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 3 cut(s) 7, 249, 316
PpuMI RGGWCCY 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspPI GGNCC 1 cut(s) 241
PspPPI RGGWCCY 1 cut(s) 241
PstI CTGCAG 1 cut(s) 249
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SatI GCNGC 3 cut(s) 6, 248, 315
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 241
ScrFI CCNGG 2 cut(s) 201, 266
SetI ASST 3 cut(s) 164, 246, 350
SfcI CTRYAG 2 cut(s) 163, 245
SinI GGWCC 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 1 cut(s) 259
SsiI CCGC 3 cut(s) 84, 149, 250
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 2 cut(s) 199, 264
TaaI ACNGT 1 cut(s) 80
TaqI TCGA 1 cut(s) 319
TaqII GACCGA 1 cut(s) 265
TasI AATT 1 cut(s) 259
TfiI GAWTC 1 cut(s) 272
TscAI CASTG 2 cut(s) 85, 286
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 3 cut(s) 5, 247, 314
Tsp45I GTSAC 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 2 cut(s) 85, 286
VpaK11BI GGWCC 1 cut(s) 241
XceI RCATGY 1 cut(s) 337
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.