FvH4_2g22241

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000251
Physical Location & Seq
Forward (+)
18276905 .. 18280314
3410 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g22241.t2

Sequence Viewer

Length: 2253 bp
ATGGCAAATGATAATCTAATCATGGGGAAGAATCGTGATTTTCCGTTGGCTCAAAATCCGCAGCTGGGTGTGGGGCATGATCACAGTATGATTATGGGTCAAAGTCATAGTTTTGCACTGGGACAAACCCATGATCAGGATTTGGAAGTAGGGCATGGTACTCGTGATGATAAGCAGGGTCTCAGAGATGCACATGATCATGGATTAGCTTTTGACCAGACGAACGAACATGTGATAGCTCTACAAGAGATGCAGAATCTTGAAGGAGAAGAAGAAGCTTTGGGTTTGGATCAGGACAATGTTCTTGAAGCCGATCAAGAGAATATTGATGTTAACAGCCATGCTCTTAGCGTGGGTTTGATGGATAGTCATGAATTGGCTGTTGCTGAGAACCACGATCTTTCTGAAAATTTAGATTTAGAGATGGATCAAAATCAGCACATGAGTATTCTACCTGTCTCATTTGAGAGTATGGATAGTCCTCCTGTTCTTCAGAGTCGAGCGTCAGCTAATTCTAATCACCAGCTGGCTGTTGGGCAAGAGTTTCCTGATGTCCAGAGCTGTCGAAGGGCACTGAGAGATGCAGCTATTGCGCTTCACTTTGAGATACAAACAGTCAAGTCCGACAAAACTCGTTTCACTGCCAAATGTGCAAGTGAAGGATGCTCTTGGCGAATTCATGCTGCAAAGCTTCCTGGTGTGCCTACCTTCTCAATAAGGACCATTCATGAAGAACATACTTGTCGTGGAATCACTCATCTTGGTCACCAGCAAGCCTCAGTCCAGTGGGTTGCAAATACTGTGGAACAGCGTTTGAGGGAGAATCCTAATTGCAGACCAAAAGAGATACTAGAAGAGATCCACCGCATTCATGGGATTGCATTAACATATAAGCAGGCATGGAGGGGGAAGGAACGGCTAATGGCTGCTGTTCGTGGATCTTTTGAAGAAGATTATCGCCTCCTTCCTCAATATTGTGAACAGATCAGAAGGACCAATCCAGGAAGTATCGCCCAGGTTTATGGGAATCCTGATGATAACTCCTTCCAGCGTCTGTTTGTATCATTACATGCATCAATATATGGATTTTTGAATGCATGTAGGCCTCTTCTTGGACTTGATAGAGTTCCTCTGAAAAGCAAGTATCTTGGGACTTTGCTTTTTGCTACTGGATTTGATGGAGAGGGTGCTTTATTTCCATTGGCATTTGGAGTGGTAGATGAAGAAAACGATGAGAATTGGATGTGGTTTCTCTCCGAGATTCGGGTCCTGCTAGAAAATCATGCAGAGTACATGCCAAGGCTTACAATTCTGTCTGATAGGCGGCAGGGTATTGTTGATGGAGTGGAAGCGAACTTCCCAACTGCTTTTCATGGGTTTTGTTTGCAGCATTTAAGCGACAGTTTACGGAAGGAATTTAATAGTACTGCGCTTGTTAATCTTCTATGGGAGGCTGCTTATGCTCTTACTCGCTTTGAGTATGAACAAAAAATTGTGGAGATTGAACAGATATCTCTAGAAGCAGCCCAATGGATTAGACAAATTTCACCATCGTTGTGGGCAACATCATGGTTTGAGGGTACAAGGTTTGGGCAGTTGACGGCTAATTGGGCCGAATCATTAAATTCTTGGATAGCAGAAGCATCTGGGCTTCCAATAATTCAATTGATGGAGTGTATCAGACGACATCTGATGACTTGGTTCAATGAACGTCGTGAGATGAGCATGCAGTGGGGAAACATACTTGTTCCTTCTGCTGAAAGCTCTGTGACAAAGGCAGTTGAGCTTTCTCAGCCCTTCAATGCTTTCCGTGGAAATGATGCTGATTTTGAAGTTAGGTACCCTGAAGGCTCGCATATAGTGGATATTCGTAACCGTAGATGTACATGCAATGGATGGCAGTTCTGTGGGTTGCCATGTTCTCATGCAGTGGCAGCTCTCCGCTCTTGTGGGCAGAATGTGTTTCGGTTCACTGAAAGTTGTTTCACTGTGACAAATTATCGGAAAGCCTACTCAGAGACGATACATCCTATTCCAGATAGAACTCTTTGGAAGGAGATGGCTGGTTTTGAAGATGAAGCCAATGGAAGTTTATGGCCCACGATCAACCCACCAAAGTCGCTTCGGCCGCCTAGTCGACCAAGGAAAAGGCGAATTCGAGCAGAAGATGCTGGTCGTGCTAAACGAGTGGTGCATTGCAGCCGCTGCAATCAGACTGGTCATTTTCGAACAACTTGTTCAGCTCCCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

751

Amino Acids

85.01

Weight (kDa)

5.75

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 174 - 239 2.2e-26 MuDR family transposase
MULE PF10551 373 - 466 3.5e-15 MULE transposase domain
SWIM PF04434 621 - 651 1.5e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1839
AccB1I GGYRCC 1 cut(s) 1839
AccBSI CCGCTC 1 cut(s) 1944
AccI GTMKAC 1 cut(s) 2137
AciI CCGC 6 cut(s) 59, 865, 1324, 1942, 2129, 2203
AclWI GGATC 4 cut(s) 297, 435, 853, 946
AcoI YGGCCR 1 cut(s) 2126
AcsI RAATTY 6 cut(s) 409, 675, 1415, 1542, 1624, 2154
AcuI CTGAAG 2 cut(s) 476, 1866
AfaI GTAC 6 cut(s) 160, 1292, 1426, 1582, 1841, 1885
AfiI CCNNNNNNNGG 4 cut(s) 65, 136, 1112, 1263
AflIII ACRYGT 1 cut(s) 229
AjnI CCWGG 3 cut(s) 694, 1000, 1014
Alw26I GTCTC 3 cut(s) 185, 463, 2012
AlwI GGATC 4 cut(s) 297, 435, 853, 946
AlwNI CAGNNNCTG 2 cut(s) 1054, 2205
AoxI GGCC 4 cut(s) 1103, 1611, 2096, 2126
ApoI RAATTY 6 cut(s) 409, 675, 1415, 1542, 1624, 2154
Asp718I GGTACC 1 cut(s) 1839
AspLEI GCGC 2 cut(s) 595, 1432
AspS9I GGNCC 5 cut(s) 720, 993, 1267, 1611, 2097
AsuHPI GGTGA 3 cut(s) 512, 758, 1539
AsuII TTCGAA 1 cut(s) 2227
AvaII GGWCC 3 cut(s) 720, 993, 1267
BaeGI GKGCMC 1 cut(s) 574
BanI GGYRCC 1 cut(s) 1839
BauI CACGAG 1 cut(s) 162
BccI CCATC 8 cut(s) 355, 418, 1172, 1334, 1558, 1663, 1890, 2053
BceAI ACGGC 2 cut(s) 932, 1617
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BciT130I CCWGG 3 cut(s) 696, 1002, 1016
BclI TGATCA 3 cut(s) 79, 133, 196
BcoDI GTCTC 3 cut(s) 185, 463, 2012
BfaI CTAG 4 cut(s) 851, 1274, 1517, 2133
BmcAI AGTACT 1 cut(s) 1426
Bme1390I CCNGG 3 cut(s) 696, 1002, 1016
Bme18I GGWCC 3 cut(s) 720, 993, 1267
BmgT120I GGNCC 5 cut(s) 720, 993, 1267, 1611, 2097
BmiI GGNNCC 2 cut(s) 1268, 1841
BmrFI CCNGG 3 cut(s) 696, 1002, 1016
BmrI ACTGGG 1 cut(s) 128
BmsI GCATC 8 cut(s) 178, 240, 571, 653, 1082, 1652, 1810, 2158
BmuI ACTGGG 1 cut(s) 128
Bpu14I TTCGAA 1 cut(s) 2227
BsaBI GATNNNNATC 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 4 cut(s) 1014, 1298, 1810, 2141
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 136, 1112, 1263
Bse1I ACTGG 4 cut(s) 123, 784, 1174, 2221
Bse3DI GCAATG 2 cut(s) 1897, 2194
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 3 cut(s) 696, 1002, 1016
BseDI CCNNGG 4 cut(s) 1014, 1298, 1810, 2141
BseGI GGATG 4 cut(s) 668, 1248, 1901, 2026
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 4 cut(s) 65, 136, 1112, 1263
BseMI GCAATG 2 cut(s) 1897, 2194
BseMII CTCAG 6 cut(s) 196, 378, 566, 792, 1805, 2028
BseNI ACTGG 4 cut(s) 123, 784, 1174, 2221
BseSI GKGCMC 1 cut(s) 574
BseX3I CGGCCG 1 cut(s) 2126
BseYI CCCAGC 1 cut(s) 64
Bsh1285I CGRYCG 1 cut(s) 2129
BshFI GGCC 4 cut(s) 1105, 1613, 2098, 2128
BshNI GGYRCC 1 cut(s) 1839
BsiEI CGRYCG 1 cut(s) 2129
BslFI GGGAC 2 cut(s) 135, 1165
BslI CCNNNNNNNGG 4 cut(s) 65, 136, 1112, 1263
BsmAI GTCTC 3 cut(s) 185, 463, 2012
BsmBI CGTCTC 1 cut(s) 2012
BsmFI GGGAC 2 cut(s) 135, 1165
BsmI GAATGC 2 cut(s) 867, 1099
BsnI GGCC 4 cut(s) 1105, 1613, 2098, 2128
Bso31I GGTCTC 1 cut(s) 185
Bsp119I TTCGAA 1 cut(s) 2227
Bsp1286I GDGCHC 1 cut(s) 574
Bsp1407I TGTACA 1 cut(s) 1883
BspACI CCGC 6 cut(s) 59, 865, 1324, 1942, 2129, 2203
BspANI GGCC 4 cut(s) 1105, 1613, 2098, 2128
BspCNI CTCAG 6 cut(s) 195, 379, 567, 791, 1804, 2027
BspHI TCATGA 2 cut(s) 370, 727
BspLI GGNNCC 2 cut(s) 1268, 1841
BspPI GGATC 4 cut(s) 297, 435, 853, 946
BspT104I TTCGAA 1 cut(s) 2227
BspT107I GGYRCC 1 cut(s) 1839
BspTNI GGTCTC 1 cut(s) 185
BsrBI CCGCTC 1 cut(s) 1944
BsrDI GCAATG 2 cut(s) 1897, 2194
BsrGI TGTACA 1 cut(s) 1883
BsrI ACTGG 4 cut(s) 123, 784, 1174, 2221
BssECI CCNNGG 4 cut(s) 1014, 1298, 1810, 2141
BssSI CACGAG 1 cut(s) 162
BssT1I CCWWGG 2 cut(s) 1298, 2141
Bst2BI CACGAG 1 cut(s) 162
Bst2UI CCWGG 3 cut(s) 696, 1002, 1016
Bst4CI ACNGT 6 cut(s) 86, 616, 802, 1403, 1877, 1990
Bst6I CTCTTC 2 cut(s) 849, 1113
BstAPI GCANNNNNTGC 3 cut(s) 590, 2168, 2205
BstAUI TGTACA 1 cut(s) 1883
BstBI TTCGAA 1 cut(s) 2227
BstC8I GCNNGC 5 cut(s) 528, 774, 897, 1727, 1853
BstDEI CTNAG 7 cut(s) 182, 347, 387, 575, 778, 1791, 2014
BstDSI CCRYGG 1 cut(s) 1810
BstEII GGTNACC 1 cut(s) 764
BstF5I GGATG 4 cut(s) 668, 1248, 1901, 2026
BstHHI GCGC 2 cut(s) 595, 1432
BstMAI GTCTC 3 cut(s) 185, 463, 2012
BstMCI CGRYCG 1 cut(s) 2129
BstNI CCWGG 3 cut(s) 696, 1002, 1016
BstNSI RCATGY 6 cut(s) 233, 1073, 1101, 1297, 1729, 1890
BstPI GGTNACC 1 cut(s) 764
BstSCI CCNGG 3 cut(s) 694, 1000, 1014
BstSLI GKGCMC 1 cut(s) 574
BstX2I RGATCY 2 cut(s) 858, 938
BstXI CCANNNNNNTGG 2 cut(s) 1022, 1557
BstYI RGATCY 2 cut(s) 858, 938
BstZI CGGCCG 1 cut(s) 2126
BsuRI GGCC 4 cut(s) 1105, 1613, 2098, 2128
BtgI CCRYGG 1 cut(s) 1810
BtsCI GGATG 4 cut(s) 668, 1248, 1901, 2026
BtsI GCAGTG 3 cut(s) 639, 1736, 1935
BtsIMutI CAGTG 8 cut(s) 116, 572, 639, 791, 1736, 1935, 1971, 1986
Cac8I GCNNGC 5 cut(s) 528, 774, 897, 1727, 1853
CaiI CAGNNNCTG 2 cut(s) 1054, 2205
CciI TCATGA 2 cut(s) 370, 727
CfoI GCGC 2 cut(s) 595, 1432
Cfr13I GGNCC 5 cut(s) 720, 993, 1267, 1611, 2097
CseI GACGC 2 cut(s) 492, 1040
Csp6I GTAC 6 cut(s) 159, 1291, 1425, 1581, 1840, 1884
CspCI CAANNNNNGTGG 2 cut(s) 783, 818
CviQI GTAC 6 cut(s) 159, 1291, 1425, 1581, 1840, 1884
DdeI CTNAG 7 cut(s) 182, 347, 387, 575, 778, 1791, 2014
EaeI YGGCCR 1 cut(s) 2126
EagI CGGCCG 1 cut(s) 2126
Eam1104I CTCTTC 2 cut(s) 849, 1113
EarI CTCTTC 2 cut(s) 849, 1113
EclXI CGGCCG 1 cut(s) 2126
Eco130I CCWWGG 2 cut(s) 1298, 2141
Eco147I AGGCCT 1 cut(s) 1105
Eco31I GGTCTC 1 cut(s) 185
Eco32I GATATC 1 cut(s) 1512
Eco47I GGWCC 3 cut(s) 720, 993, 1267
Eco52I CGGCCG 1 cut(s) 2126
Eco57I CTGAAG 2 cut(s) 476, 1866
Eco91I GGTNACC 1 cut(s) 764
EcoO109I RGGNCCY 1 cut(s) 1267
EcoO65I GGTNACC 1 cut(s) 764
EcoRI GAATTC 2 cut(s) 675, 2154
EcoRII CCWGG 3 cut(s) 694, 1000, 1014
EcoRV GATATC 1 cut(s) 1512
EcoT14I CCWWGG 2 cut(s) 1298, 2141
EcoT22I ATGCAT 2 cut(s) 1075, 1099
ErhI CCWWGG 2 cut(s) 1298, 2141
Esp3I CGTCTC 1 cut(s) 2012
FaqI GGGAC 2 cut(s) 135, 1165
FbaI TGATCA 3 cut(s) 79, 133, 196
FblI GTMKAC 1 cut(s) 2137
FokI GGATG 4 cut(s) 675, 1255, 1908, 2013
FspBI CTAG 4 cut(s) 851, 1274, 1517, 2133
GlaI GCGC 2 cut(s) 594, 1431
GsaI CCCAGC 1 cut(s) 68
HaeIII GGCC 4 cut(s) 1105, 1613, 2098, 2128
HgaI GACGC 2 cut(s) 492, 1040
HhaI GCGC 2 cut(s) 595, 1432
Hin6I GCGC 2 cut(s) 593, 1430
HinP1I GCGC 2 cut(s) 593, 1430
HincII GTYRAC 3 cut(s) 334, 1599, 2138
HindII GTYRAC 3 cut(s) 334, 1599, 2138
HindIII AAGCTT 2 cut(s) 276, 689
HinfI GANTC 8 cut(s) 31, 256, 496, 750, 823, 1027, 1261, 1616
HpaI GTTAAC 1 cut(s) 334
HphI GGTGA 3 cut(s) 512, 758, 1539
Hpy166II GTNNAC 6 cut(s) 334, 980, 1406, 1599, 1971, 2138
Hpy8I GTNNAC 6 cut(s) 334, 980, 1406, 1599, 1971, 2138
Hpy99I CGWCG 1 cut(s) 1716
HpyCH4III ACNGT 6 cut(s) 86, 616, 802, 1403, 1877, 1990
HpyCH4IV ACGT 1 cut(s) 1711
HpyF3I CTNAG 7 cut(s) 182, 347, 387, 575, 778, 1791, 2014
HpySE526I ACGT 1 cut(s) 1711
HspAI GCGC 2 cut(s) 593, 1430
KpnI GGTACC 1 cut(s) 1843
Ksp22I TGATCA 3 cut(s) 79, 133, 196
KspAI GTTAAC 1 cut(s) 334
LmnI GCTCC 1 cut(s) 2248
LweI GCATC 8 cut(s) 178, 240, 571, 653, 1082, 1652, 1810, 2158
MaeI CTAG 4 cut(s) 851, 1274, 1517, 2133
MaeII ACGT 1 cut(s) 1711
MaeIII GTNAC 4 cut(s) 764, 1768, 1871, 1990
MbiI CCGCTC 1 cut(s) 1944
MfeI CAATTG 1 cut(s) 1664
MflI RGATCY 2 cut(s) 858, 938
MhlI GDGCHC 1 cut(s) 574
MlyI GAGTC 1 cut(s) 505
MmeI TCCRAC 1 cut(s) 648
Mph1103I ATGCAT 2 cut(s) 1075, 1099
MseI TTAA 6 cut(s) 333, 884, 1394, 1419, 1437, 1622
MslI CAYNNNNRTG 2 cut(s) 198, 1555
MspA1I CMGCKG 3 cut(s) 64, 526, 2205
MspR9I CCNGG 3 cut(s) 696, 1002, 1016
MunI CAATTG 1 cut(s) 1664
Mva1269I GAATGC 2 cut(s) 867, 1099
MvaI CCWGG 3 cut(s) 696, 1002, 1016
NlaIV GGNNCC 2 cut(s) 1268, 1841
NmuCI GTSAC 3 cut(s) 764, 1768, 1990
NsiI ATGCAT 2 cut(s) 1075, 1099
NspI RCATGY 6 cut(s) 233, 1073, 1101, 1297, 1729, 1890
NspV TTCGAA 1 cut(s) 2227
PaeI GCATGC 1 cut(s) 1729
PagI TCATGA 2 cut(s) 370, 727
PceI AGGCCT 1 cut(s) 1105
PciI ACATGT 1 cut(s) 229
PcsI WCGNNNNNNNCGW 1 cut(s) 2182
PctI GAATGC 2 cut(s) 867, 1099
PfeI GAWTC 7 cut(s) 31, 256, 750, 823, 1027, 1261, 1616
PfoI TCCNGGA 1 cut(s) 1000
PleI GAGTC 1 cut(s) 504
PpsI GAGTC 1 cut(s) 504
PpuMI RGGWCCY 1 cut(s) 1267
PscI ACATGT 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 1267
Psp6I CCWGG 3 cut(s) 694, 1000, 1014
PspEI GGTNACC 1 cut(s) 764
PspFI CCCAGC 1 cut(s) 64
PspGI CCWGG 3 cut(s) 694, 1000, 1014
PspN4I GGNNCC 2 cut(s) 1268, 1841
PspPI GGNCC 5 cut(s) 720, 993, 1267, 1611, 2097
PspPPI RGGWCCY 1 cut(s) 1267
PstNI CAGNNNCTG 2 cut(s) 1054, 2205
PsuI RGATCY 2 cut(s) 858, 938
PvuII CAGCTG 2 cut(s) 64, 526
RsaI GTAC 6 cut(s) 160, 1292, 1426, 1582, 1841, 1885
RsaNI GTAC 6 cut(s) 159, 1291, 1425, 1581, 1840, 1884
RseI CAYNNNNRTG 2 cut(s) 198, 1555
SalI GTCGAC 1 cut(s) 2136
SaqAI TTAA 6 cut(s) 333, 884, 1394, 1419, 1437, 1622
Sau96I GGNCC 5 cut(s) 720, 993, 1267, 1611, 2097
ScaI AGTACT 1 cut(s) 1426
SchI GAGTC 1 cut(s) 505
ScrFI CCNGG 3 cut(s) 696, 1002, 1016
SduI GDGCHC 1 cut(s) 574
SfaNI GCATC 8 cut(s) 178, 240, 571, 653, 1082, 1652, 1810, 2158
SfuI TTCGAA 1 cut(s) 2227
SinI GGWCC 3 cut(s) 720, 993, 1267
SmiMI CAYNNNNRTG 2 cut(s) 198, 1555
SphI GCATGC 1 cut(s) 1729
SseBI AGGCCT 1 cut(s) 1105
SsiI CCGC 6 cut(s) 59, 865, 1324, 1942, 2129, 2203
SspI AATATT 2 cut(s) 325, 974
SspMI CTAG 4 cut(s) 851, 1274, 1517, 2133
StuI AGGCCT 1 cut(s) 1105
StyD4I CCNGG 3 cut(s) 694, 1000, 1014
StyI CCWWGG 2 cut(s) 1298, 2141
TaaI ACNGT 6 cut(s) 86, 616, 802, 1403, 1877, 1990
TaiI ACGT 1 cut(s) 1714
TaqI TCGA 5 cut(s) 499, 565, 2137, 2158, 2227
TatI WGTACW 3 cut(s) 1290, 1424, 1883
TauI GCSGC 3 cut(s) 1327, 2131, 2205
TfiI GAWTC 7 cut(s) 31, 256, 750, 823, 1027, 1261, 1616
Tru1I TTAA 6 cut(s) 333, 884, 1394, 1419, 1437, 1622
Tru9I TTAA 6 cut(s) 333, 884, 1394, 1419, 1437, 1622
TscAI CASTG 8 cut(s) 123, 579, 646, 791, 1736, 1935, 1978, 1993
TseFI GTSAC 3 cut(s) 764, 1768, 1990
Tsp45I GTSAC 3 cut(s) 764, 1768, 1990
TspGWI ACGGA 3 cut(s) 33, 1423, 1799
TspRI CASTG 8 cut(s) 123, 579, 646, 791, 1736, 1935, 1978, 1993
VpaK11BI GGWCC 3 cut(s) 720, 993, 1267
XapI RAATTY 6 cut(s) 409, 675, 1415, 1542, 1624, 2154
XbaI TCTAGA 1 cut(s) 1516
XceI RCATGY 6 cut(s) 233, 1073, 1101, 1297, 1729, 1890
XcmI CCANNNNNNNNNTGG 2 cut(s) 530, 869
XmiI GTMKAC 1 cut(s) 2137
XspI CTAG 4 cut(s) 851, 1274, 1517, 2133
ZrmI AGTACT 1 cut(s) 1426
Zsp2I ATGCAT 2 cut(s) 1075, 1099
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.