Rh6BG032600

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000251
Physical Location & Seq
Forward (+)
4900424 .. 4901419
996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG032600.1

Sequence Viewer

Length: 996 bp
ATGGAGGAGGATACATTTTTTGTTGGTCAAGAATTCCCTGATGTTAAGGCGTTTAGGAATGCGATTAAAGAAGCAACAATTGCCCAACACTTTGAGCTTCGTAAAATAAAAAGTGACCATATCCGCTACTTTGCAAAGTGTGCCACGGAAGCTTGTCCTTGGCTCATTCGTGTTGTGAAGCTTCCTAATGCGCCGACATTTATGATAAGAAGCCTTGAAGGGAAGCACACTTGTGGTAGAAATGTGCACAATGGGCGTCATCAGGCATCTATTGATTGGATTGTTAGTTTTATAGAACAACGTTTGCGAGATAACATTAATTACAAGCCGAAGGATATATTGCATGATATCCATCAGCAATATGGGATTACCATACCATATAAGCAGGCTTGGCGTGCAAAGGAATGGAAACTGGCTGCGATATATGGATCTTCCGAGAAAGGGTATTGCCTTCTTCCTTCATACTGTGAAGAAATAAAGAAGACCAACCCTGGAAGCATTGCTGAGGTGTTTACTACTGGTCCAGATCACTGGTTCCAGCTGTTATTTGTTTCCTTTTATTCATCCATTTATGGTTTTCTGAATGGTTGCTTGCCTGTTATTGGGCTTGGTGGAATCCATCTTAAGAGAAAATATCTCGGTACCTTACTCTCTGCAACTTCTTTTGATGTTGAGGGGGATTTATTTCCGCTTGCATTTGGTGTTGTTGATGAAGAAAATGATGAGAGCTGGATGTGGTTCTTGTCAGAGTTGCACAAGGCACTAGAGATGAACACCCAGAATATGTCGCAGCTCACATTTATATCTGATACACAGAAGGGCATTGCAAATGCAGTGAGAAGGAAATTCCCAAATTCTGTACATGATATTTGCTTTCGCCACTTGAGTGAAAGCATTGGAAAAGAATTCAAGAACCCAAGGCTCGTTCATCTGTTATGGAAAGCTACACAAGCCACTACTACCATTGGTTTTAAAGAAAAAATGGCTCAAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

331

Amino Acids

38.06

Weight (kDa)

8.55

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 4 - 69 9.2e-22 MuDR family transposase
MULE PF10551 201 - 296 4.3e-20 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 641
AccB1I GGYRCC 1 cut(s) 641
AciI CCGC 2 cut(s) 124, 689
AclI AACGTT 1 cut(s) 301
AclWI GGATC 1 cut(s) 436
AcsI RAATTY 4 cut(s) 32, 845, 853, 905
AcyI GRCGYC 1 cut(s) 256
AfaI GTAC 2 cut(s) 643, 861
AfiI CCNNNNNNNGG 2 cut(s) 441, 602
AflII CTTAAG 1 cut(s) 623
AgsI TTSAA 2 cut(s) 218, 910
AjnI CCWGG 1 cut(s) 490
AleI CACNNNNGTG 2 cut(s) 231, 885
AluBI AGCT 7 cut(s) 97, 152, 181, 541, 729, 793, 944
AluI AGCT 7 cut(s) 97, 152, 181, 541, 729, 793, 944
Alw21I GWGCWC 1 cut(s) 249
Alw44I GTGCAC 1 cut(s) 245
AlwI GGATC 1 cut(s) 436
ApaLI GTGCAC 1 cut(s) 245
ApeKI GCWGC 2 cut(s) 416, 790
ApoI RAATTY 4 cut(s) 32, 845, 853, 905
AseI ATTAAT 1 cut(s) 318
Asp718I GGTACC 1 cut(s) 641
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 521
AvaII GGWCC 1 cut(s) 521
BaeGI GKGCMC 1 cut(s) 249
BanI GGYRCC 1 cut(s) 641
BbsI GAAGAC 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 504
BbvI GCAGC 2 cut(s) 403, 802
BccI CCATC 2 cut(s) 360, 627
BciT130I CCWGG 1 cut(s) 492
BciVI GTATCC 1 cut(s) 4
BfaI CTAG 1 cut(s) 764
BfrI CTTAAG 1 cut(s) 623
BfuI GTATCC 1 cut(s) 4
BisI GCNGC 2 cut(s) 417, 791
BlsI GCNGC 2 cut(s) 418, 792
Bme1390I CCNGG 1 cut(s) 492
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 2 cut(s) 536, 643
BmrFI CCNGG 1 cut(s) 492
BmsI GCATC 1 cut(s) 275
BpiI GAAGAC 1 cut(s) 488
Bpu10I CCTNAGC 1 cut(s) 504
BpuEI CTTGAG 1 cut(s) 904
BsaBI GATNNNNATC 1 cut(s) 351
BsaHI GRCGYC 1 cut(s) 256
BsaJI CCNNGG 4 cut(s) 144, 158, 490, 917
Bsc4I CCNNNNNNNGG 2 cut(s) 441, 602
Bse1I ACTGG 3 cut(s) 417, 523, 536
Bse3DI GCAATG 2 cut(s) 498, 822
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 4 cut(s) 144, 158, 490, 917
BseGI GGATG 2 cut(s) 563, 738
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 2 cut(s) 441, 602
BseMI GCAATG 2 cut(s) 498, 822
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 3 cut(s) 417, 523, 536
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 249
BseXI GCAGC 2 cut(s) 403, 802
BshNI GGYRCC 1 cut(s) 641
BsiHKAI GWGCWC 1 cut(s) 249
BslI CCNNNNNNNGG 2 cut(s) 441, 602
BsmI GAATGC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 249
Bsp1407I TGTACA 1 cut(s) 859
Bsp143I GATC 2 cut(s) 428, 526
BspACI CCGC 2 cut(s) 124, 689
BspCNI CTCAG 1 cut(s) 496
BspLI GGNNCC 2 cut(s) 536, 643
BspPI GGATC 1 cut(s) 436
BspT107I GGYRCC 1 cut(s) 641
BspTI CTTAAG 1 cut(s) 623
BsrDI GCAATG 2 cut(s) 498, 822
BsrGI TGTACA 1 cut(s) 859
BsrI ACTGG 3 cut(s) 417, 523, 536
BssECI CCNNGG 4 cut(s) 144, 158, 490, 917
BssMI GATC 2 cut(s) 428, 526
BssNI GRCGYC 1 cut(s) 256
BssT1I CCWWGG 2 cut(s) 158, 917
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 1 cut(s) 467
BstACI GRCGYC 1 cut(s) 256
BstAFI CTTAAG 1 cut(s) 623
BstAPI GCANNNNNTGC 2 cut(s) 80, 140
BstAUI TGTACA 1 cut(s) 859
BstC8I GCNNGC 4 cut(s) 387, 396, 593, 693
BstDEI CTNAG 1 cut(s) 504
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 563, 738
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 2 cut(s) 431, 529
BstMBI GATC 2 cut(s) 428, 526
BstMWI GCNNNNNNNGC 7 cut(s) 80, 140, 149, 253, 391, 395, 950
BstNI CCWGG 1 cut(s) 492
BstSCI CCNGG 1 cut(s) 490
BstSLI GKGCMC 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 403, 802
BstV2I GAAGAC 1 cut(s) 488
BstX2I RGATCY 1 cut(s) 428
BstXI CCANNNNNNTGG 1 cut(s) 531
BstYI RGATCY 1 cut(s) 428
BsuI GTATCC 1 cut(s) 4
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 2 cut(s) 563, 738
BtsI GCAGTG 1 cut(s) 840
BtsIMutI CAGTG 2 cut(s) 529, 840
Cac8I GCNNGC 4 cut(s) 387, 396, 593, 693
CfoI GCGC 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 521
CseI GACGC 1 cut(s) 245
Csp6I GTAC 2 cut(s) 642, 860
CviAII CATG 2 cut(s) 344, 863
CviQI GTAC 2 cut(s) 642, 860
DdeI CTNAG 1 cut(s) 504
DpnI GATC 2 cut(s) 430, 528
DpnII GATC 2 cut(s) 428, 526
DraI TTTAAA 1 cut(s) 973
Eco130I CCWWGG 2 cut(s) 158, 917
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 521
EcoRI GAATTC 2 cut(s) 32, 905
EcoRII CCWGG 1 cut(s) 490
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 2 cut(s) 158, 917
ErhI CCWWGG 2 cut(s) 158, 917
FaeI CATG 2 cut(s) 347, 866
FatI CATG 2 cut(s) 343, 862
Fnu4HI GCNGC 2 cut(s) 417, 791
FokI GGATG 2 cut(s) 550, 745
Fsp4HI GCNGC 2 cut(s) 417, 791
FspBI CTAG 1 cut(s) 764
GlaI GCGC 1 cut(s) 192
GluI GCNGC 2 cut(s) 417, 791
HgaI GACGC 1 cut(s) 245
HhaI GCGC 1 cut(s) 193
Hin1I GRCGYC 1 cut(s) 256
Hin1II CATG 2 cut(s) 347, 866
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HindIII AAGCTT 2 cut(s) 150, 179
HinfI GANTC 1 cut(s) 615
Hpy166II GTNNAC 2 cut(s) 247, 513
Hpy188I TCNGA 4 cut(s) 436, 582, 748, 808
Hpy188III TCNNGA 3 cut(s) 29, 524, 910
Hpy8I GTNNAC 2 cut(s) 247, 513
HpyAV CCTTC 6 cut(s) 212, 325, 461, 468, 811, 834
HpyCH4III ACNGT 1 cut(s) 467
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 9 cut(s) 134, 247, 343, 398, 656, 695, 754, 827, 833
HpyF10VI GCNNNNNNNGC 7 cut(s) 80, 140, 149, 253, 391, 395, 950
HpyF3I CTNAG 1 cut(s) 504
HpySE526I ACGT 1 cut(s) 301
Hsp92I GRCGYC 1 cut(s) 256
Hsp92II CATG 2 cut(s) 347, 866
HspAI GCGC 1 cut(s) 191
KpnI GGTACC 1 cut(s) 645
Kzo9I GATC 2 cut(s) 428, 526
Lsp1109I GCAGC 2 cut(s) 403, 802
LweI GCATC 1 cut(s) 275
MaeI CTAG 1 cut(s) 764
MaeII ACGT 1 cut(s) 301
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 430, 528
MboI GATC 2 cut(s) 428, 526
MboII GAAGA 5 cut(s) 423, 446, 482, 493, 725
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 1 cut(s) 428
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 6 cut(s) 32, 78, 319, 845, 853, 905
MnlI CCTC 2 cut(s) 499, 667
MseI TTAA 5 cut(s) 45, 66, 318, 624, 972
MslI CAYNNNNRTG 2 cut(s) 231, 885
MspA1I CMGCKG 1 cut(s) 541
MspCI CTTAAG 1 cut(s) 623
MspR9I CCNGG 1 cut(s) 492
MunI CAATTG 1 cut(s) 78
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 7 cut(s) 80, 140, 149, 253, 391, 395, 950
NdeII GATC 2 cut(s) 428, 526
NlaIII CATG 2 cut(s) 347, 866
NlaIV GGNNCC 2 cut(s) 536, 643
NmuCI GTSAC 1 cut(s) 113
OliI CACNNNNGTG 2 cut(s) 231, 885
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 615
PkrI GCNGC 2 cut(s) 418, 792
PshBI ATTAAT 1 cut(s) 318
Psp1406I AACGTT 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 2 cut(s) 536, 643
PspPI GGNCC 1 cut(s) 521
PsuI RGATCY 1 cut(s) 428
PvuII CAGCTG 1 cut(s) 541
RsaI GTAC 2 cut(s) 643, 861
RsaNI GTAC 2 cut(s) 642, 860
RseI CAYNNNNRTG 2 cut(s) 231, 885
SaqAI TTAA 5 cut(s) 45, 66, 318, 624, 972
SatI GCNGC 2 cut(s) 417, 791
Sau3AI GATC 2 cut(s) 428, 526
Sau96I GGNCC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 492
SduI GDGCHC 1 cut(s) 249
SfaNI GCATC 1 cut(s) 275
SinI GGWCC 1 cut(s) 521
SmiMI CAYNNNNRTG 2 cut(s) 231, 885
SmlI CTYRAG 2 cut(s) 623, 883
SmoI CTYRAG 2 cut(s) 623, 883
Sse9I AATT 6 cut(s) 32, 78, 319, 845, 853, 905
SsiI CCGC 2 cut(s) 124, 689
SspMI CTAG 1 cut(s) 764
StyD4I CCNGG 1 cut(s) 490
StyI CCWWGG 2 cut(s) 158, 917
TaaI ACNGT 1 cut(s) 467
TaiI ACGT 1 cut(s) 304
TasI AATT 6 cut(s) 32, 78, 319, 845, 853, 905
TatI WGTACW 1 cut(s) 859
TfiI GAWTC 1 cut(s) 615
Tru1I TTAA 5 cut(s) 45, 66, 318, 624, 972
Tru9I TTAA 5 cut(s) 45, 66, 318, 624, 972
TscAI CASTG 2 cut(s) 536, 840
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 2 cut(s) 416, 790
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 5 cut(s) 450, 552, 726, 785, 917
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 2 cut(s) 536, 840
Vha464I CTTAAG 1 cut(s) 623
VneI GTGCAC 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 521
VspI ATTAAT 1 cut(s) 318
XapI RAATTY 4 cut(s) 32, 845, 853, 905
XcmI CCANNNNNNNNNTGG 1 cut(s) 359
XspI CTAG 1 cut(s) 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.