Rorug02G0627300

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000251
Physical Location & Seq
Forward (+)
74259567 .. 74260319
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0627300.1

Sequence Viewer

Length: 654 bp
ATGCCTACGTCTACAGAGGGATGTGTGTTTAATAGCGAAGTGTTCCATTCATCTGTATACTGCCGGACATGCAGGAACAGGCTCAGGGTCAGCTTTTATGTCTTTATGAAAAGACAAGGAAGCGGCGGTGGTGCTCCAGTTGTTACCCCAATAGGTTCAAGAGATGTTTACGTCGGTTTCAGTCATATCAAGCAATCATCATCTTATAGGAGTAGCTGCGCCCAGAGAATAGCCCAGAATCTTTCAAGTCTGGGTGTTCCGGAAGATAAACAGCCTTCTGTTCTTGAAAAGATTTTCGAGGTGGTTGATGTGTCCGTCTCCCCAGACCAGGCAATTCTTGTGAGTATGTGGTTCTATAATCCGGTTCCGGTAGATGTTCAACTTAGTCCTCCAATTGCGAGATTTGTTCCTGCAACTAGGTCATCGATTGAGGGTTTGTTGCAAGTGAGGGTTGATAGAGGTCTTATAATTCAGACGCCATCTTGTGTTATTTGTGACGAGGATTTTGCAGATCAACTGATGATCACTCGTATGCCCTGCGCACACCATTATCATACACATTGCATTGTTCGGTGGCTGGAGATCAATCACATGTGTCCCCTTTGCCGATTCCCAATGCCAACTGCGGAAGCTGCTGAGCCATCAAATCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

217

Amino Acids

24.21

Weight (kDa)

7.02

Isoelectric Point (pI)

67.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 161 - 203 2.8e-12 Ring finger domain
zf-rbx1 PF12678 161 - 203 2.7e-09 RING-H2 zinc finger domain
zf-C3HC4_2 PF13923 162 - 202 9.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 162 - 189 8.8e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
Acc16I TGCGCA 1 cut(s) 541
AccI GTMKAC 2 cut(s) 11, 57
AccIII TCCGGA 1 cut(s) 259
AciI CCGC 3 cut(s) 123, 126, 626
AcyI GRCGYC 1 cut(s) 476
AfiI CCNNNNNNNGG 1 cut(s) 328
AflIII ACRYGT 1 cut(s) 591
AgsI TTSAA 4 cut(s) 159, 246, 287, 380
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 3 cut(s) 93, 216, 632
AluI AGCT 3 cut(s) 93, 216, 632
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 322
Aor13HI TCCGGA 1 cut(s) 259
ApeKI GCWGC 2 cut(s) 216, 632
ArsI GACNNNNNNTTYG 2 cut(s) 488, 520
AspLEI GCGC 2 cut(s) 221, 542
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 2 cut(s) 203, 619
BccI CCATC 2 cut(s) 487, 649
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BciT130I CCWGG 1 cut(s) 329
BclI TGATCA 1 cut(s) 522
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 1 cut(s) 417
BfmI CTRYAG 1 cut(s) 12
BisI GCNGC 3 cut(s) 124, 217, 633
BlpI GCTNAGC 1 cut(s) 636
BlsI GCNGC 3 cut(s) 125, 218, 634
Bme1390I CCNGG 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 1 cut(s) 329
BpmI CTGGAG 2 cut(s) 120, 599
Bpu10I CCTNAGC 1 cut(s) 83
Bpu1102I GCTNAGC 1 cut(s) 636
Bsa29I ATCGAT 1 cut(s) 425
BsaHI GRCGYC 1 cut(s) 476
BsaWI WCCGGW 3 cut(s) 259, 361, 367
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 559
BseAI TCCGGA 1 cut(s) 259
BseBI CCWGG 1 cut(s) 329
BseCI ATCGAT 1 cut(s) 425
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 1 cut(s) 559
BseMII CTCAG 2 cut(s) 97, 627
BseNI ACTGG 1 cut(s) 137
BseXI GCAGC 2 cut(s) 203, 619
BshVI ATCGAT 1 cut(s) 425
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 4 cut(s) 64, 260, 362, 368
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 322
BsmBI CGTCTC 1 cut(s) 322
BsmFI GGGAC 1 cut(s) 582
Bsp1286I GDGCHC 1 cut(s) 136
Bsp13I TCCGGA 1 cut(s) 259
Bsp143I GATC 3 cut(s) 511, 522, 582
Bsp1720I GCTNAGC 1 cut(s) 636
BspACI CCGC 3 cut(s) 123, 126, 626
BspCNI CTCAG 2 cut(s) 96, 628
BspDI ATCGAT 1 cut(s) 425
BspEI TCCGGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 559
BsrI ACTGG 1 cut(s) 137
BssMI GATC 3 cut(s) 511, 522, 582
BssNAI GTATAC 1 cut(s) 58
BssNI GRCGYC 1 cut(s) 476
Bst1107I GTATAC 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 329
BstACI GRCGYC 1 cut(s) 476
BstDEI CTNAG 3 cut(s) 83, 383, 636
BstF5I GGATG 1 cut(s) 26
BstHHI GCGC 2 cut(s) 221, 542
BstKTI GATC 3 cut(s) 514, 525, 585
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 3 cut(s) 511, 522, 582
BstMWI GCNNNNNNNGC 2 cut(s) 69, 632
BstNI CCWGG 1 cut(s) 329
BstNSI RCATGY 2 cut(s) 72, 595
BstSCI CCNGG 1 cut(s) 327
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 203, 619
BstZ17I GTATAC 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 425
BsuTUI ATCGAT 1 cut(s) 425
BtsCI GGATG 1 cut(s) 26
CfoI GCGC 2 cut(s) 221, 542
ClaI ATCGAT 1 cut(s) 425
CseI GACGC 1 cut(s) 484
CviAII CATG 2 cut(s) 69, 592
CviJI RGCY 8 cut(s) 82, 93, 216, 233, 274, 577, 632, 640
CviKI_1 RGCY 8 cut(s) 82, 93, 216, 233, 274, 577, 632, 640
DdeI CTNAG 3 cut(s) 83, 383, 636
DpnI GATC 3 cut(s) 513, 524, 584
DpnII GATC 3 cut(s) 511, 522, 582
EcoRII CCWGG 1 cut(s) 327
Esp3I CGTCTC 1 cut(s) 322
FaeI CATG 2 cut(s) 72, 595
FaqI GGGAC 1 cut(s) 582
FatI CATG 2 cut(s) 68, 591
FbaI TGATCA 1 cut(s) 522
FblI GTMKAC 2 cut(s) 11, 57
Fnu4HI GCNGC 3 cut(s) 124, 217, 633
FokI GGATG 1 cut(s) 33
Fsp4HI GCNGC 3 cut(s) 124, 217, 633
FspBI CTAG 1 cut(s) 417
FspI TGCGCA 1 cut(s) 541
GlaI GCGC 2 cut(s) 220, 541
GluI GCNGC 3 cut(s) 124, 217, 633
GsuI CTGGAG 2 cut(s) 120, 599
HapII CCGG 4 cut(s) 64, 260, 362, 368
HgaI GACGC 1 cut(s) 484
HhaI GCGC 2 cut(s) 221, 542
Hin1I GRCGYC 1 cut(s) 476
Hin1II CATG 2 cut(s) 72, 595
Hin6I GCGC 2 cut(s) 219, 540
HinP1I GCGC 2 cut(s) 219, 540
HinfI GANTC 2 cut(s) 238, 609
HpaII CCGG 4 cut(s) 64, 260, 362, 368
Hpy166II GTNNAC 3 cut(s) 12, 58, 169
Hpy188I TCNGA 1 cut(s) 474
Hpy188III TCNNGA 3 cut(s) 159, 260, 284
Hpy8I GTNNAC 3 cut(s) 12, 58, 169
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 285
HpyCH4IV ACGT 2 cut(s) 8, 171
HpyCH4V TGCA 5 cut(s) 72, 413, 442, 509, 564
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 632
HpyF3I CTNAG 3 cut(s) 83, 383, 636
HpySE526I ACGT 2 cut(s) 8, 171
Hsp92I GRCGYC 1 cut(s) 476
Hsp92II CATG 2 cut(s) 72, 595
HspAI GCGC 2 cut(s) 219, 540
Kpn2I TCCGGA 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 522
Kzo9I GATC 3 cut(s) 511, 522, 582
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 2 cut(s) 203, 619
MaeI CTAG 1 cut(s) 417
MaeII ACGT 2 cut(s) 8, 171
MaeIII GTNAC 2 cut(s) 142, 494
MalI GATC 3 cut(s) 513, 524, 584
MboI GATC 3 cut(s) 511, 522, 582
MboII GAAGA 1 cut(s) 275
MfeI CAATTG 1 cut(s) 393
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 3 cut(s) 333, 393, 468
MnlI CCTC 7 cut(s) 10, 292, 399, 424, 441, 452, 493
MroI TCCGGA 1 cut(s) 259
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 1 cut(s) 530
MspI CCGG 4 cut(s) 64, 260, 362, 368
MspR9I CCNGG 1 cut(s) 329
MunI CAATTG 1 cut(s) 393
MvaI CCWGG 1 cut(s) 329
MwoI GCNNNNNNNGC 2 cut(s) 69, 632
NdeII GATC 3 cut(s) 511, 522, 582
NlaIII CATG 2 cut(s) 72, 595
NlaIV GGNNCC 1 cut(s) 366
NmuCI GTSAC 1 cut(s) 494
NsbI TGCGCA 1 cut(s) 541
NspI RCATGY 2 cut(s) 72, 595
PciI ACATGT 1 cut(s) 591
PfeI GAWTC 2 cut(s) 238, 609
PkrI GCNGC 3 cut(s) 125, 218, 634
PscI ACATGT 1 cut(s) 591
PsiI TTATAA 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 366
RseI CAYNNNNRTG 1 cut(s) 530
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 3 cut(s) 124, 217, 633
Sau3AI GATC 3 cut(s) 511, 522, 582
ScrFI CCNGG 1 cut(s) 329
SduI GDGCHC 1 cut(s) 136
SetI ASST 9 cut(s) 11, 95, 157, 174, 218, 303, 422, 463, 634
SfcI CTRYAG 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 530
Sse9I AATT 3 cut(s) 333, 393, 468
SsiI CCGC 3 cut(s) 123, 126, 626
SspMI CTAG 1 cut(s) 417
StyD4I CCNGG 1 cut(s) 327
TaiI ACGT 2 cut(s) 11, 174
TaqI TCGA 2 cut(s) 297, 425
TasI AATT 3 cut(s) 333, 393, 468
TauI GCSGC 1 cut(s) 126
TfiI GAWTC 2 cut(s) 238, 609
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TseFI GTSAC 1 cut(s) 494
TseI GCWGC 2 cut(s) 216, 632
Tsp45I GTSAC 1 cut(s) 494
TspDTI ATGAA 2 cut(s) 39, 122
TspGWI ACGGA 1 cut(s) 304
XceI RCATGY 2 cut(s) 72, 595
XmiI GTMKAC 2 cut(s) 11, 57
XspI CTAG 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.