MD04G1227400.v1.1

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000251
Physical Location & Seq
Reverse (-)
30695886 .. 30698517
2632 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1227400.v1.1.491

Sequence Viewer

Length: 1089 bp
ATGGCTAACCACGATTTGATGCTTGGGCAAAGTCACAATTTAGCACTTGGGCAGAATCAGCAAGTACTAGGCCACAATCATAATGTAGGCCTTGGGCAAAATCATGATTTTGAATTGGGACAGGCCCACGACCATGAATTGGGTTTAGGACAGAGCCATGACCCAGAAGGGGACGATGATCACAGCTATGGGCATGATAATGAGTTAGGTGTGGATCGGAAACCTAATCATGATGACCATGAATTGCCTCTTTCTACTCAGAACCATAATATGGTCTTAGAGAACAATGAATTGGCTGTCTCAGAGAACCAAGAACTTGATGAAAATATGGAACTGTCTATGGATCAAAATAATGAAATGGGGATAGAATCTCCCCATGGTTTGAGTATCCAGGAATCTGATTTTGCAGTTGCACTAAGCCCCAGTCCTGTGATTCAGGCCCGTATGGCGCTTGTAAATCCCAATTATGAATTGTCAGTGGGGCAAGAGTTCCCTGATGTCAAGAGCTGCCGGAGAGCATTGAGGGATACAGCTATTGCCTTACACTTTGAAATGCAGACTATTAAATCTGACAAGACTCGCTTCACTGCTAAATGTGCCACTGAGGGATGCCCATGGCGTATTCATGCTGCAAAGCTTCCCGGAGTTCCAACTTTCACAATCAGGACCATCCATGAGAATCATACATGTGGAGGAATTTCCCATCTTGGCCATCAGCAAGCCTCAGTTCAATGGGTTGCAAATTCTGTGGAGCAACGGCTTAGAGAGAACCCTAATTACAAGCCAAAGGAGATACTGGAGGAGATTCACCGAGTTCACGGTATCACCTTATCATACAAGCAAGCTTGGCGAGGCAAGGAGCGTATCATGGCTGCAATGCGTGGATCCTTTGAAGAAGGGTATCGCTTGCTTCCACAATATTGTGAACAGCTGAAGCGGACAAACCCAGGGAGTATTGCATCTGTTTATGCATGCCCGAATGATAACAGCTTCCAGCGCCTCTTCATATCATTTCAGGCATCAATTTATGGTTTCCTGAATGCTTGTCGGCCCCTACTTGGACTTGATAGGACATATTTGAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

363

Amino Acids

40.78

Weight (kDa)

5.78

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 157 - 221 6e-28 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 139, 271
AciI CCGC 1 cut(s) 937
AclWI GGATC 4 cut(s) 222, 351, 879, 892
AcoI YGGCCR 1 cut(s) 709
AcsI RAATTY 2 cut(s) 696, 742
AcuI CTGAAG 1 cut(s) 953
AfaI GTAC 1 cut(s) 66
AfiI CCNNNNNNNGG 4 cut(s) 139, 169, 271, 1058
AflIII ACRYGT 1 cut(s) 686
AgsI TTSAA 5 cut(s) 113, 551, 731, 893, 1081
AjnI CCWGG 2 cut(s) 390, 946
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 7 cut(s) 186, 507, 533, 637, 845, 931, 990
AluI AGCT 7 cut(s) 186, 507, 533, 637, 845, 931, 990
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 4 cut(s) 222, 351, 879, 892
AoxI GGCC 6 cut(s) 70, 88, 123, 438, 709, 1049
ApeKI GCWGC 3 cut(s) 507, 629, 872
ApoI RAATTY 2 cut(s) 696, 742
AspLEI GCGC 2 cut(s) 451, 999
AspS9I GGNCC 4 cut(s) 124, 439, 666, 1050
AsuC2I CCSGG 1 cut(s) 642
AsuHPI GGTGA 2 cut(s) 800, 817
AvaII GGWCC 1 cut(s) 666
BalI TGGCCA 1 cut(s) 711
BamHI GGATCC 1 cut(s) 884
BbvI GCAGC 3 cut(s) 494, 616, 859
BccI CCATC 3 cut(s) 677, 711, 720
BceAI ACGGC 1 cut(s) 773
BciT130I CCWGG 2 cut(s) 392, 948
BciVI GTATCC 2 cut(s) 398, 520
BclI TGATCA 1 cut(s) 178
BcnI CCSGG 1 cut(s) 642
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 1 cut(s) 68
BfoI RGCGCY 2 cut(s) 452, 1000
BfuI GTATCC 2 cut(s) 398, 520
BglI GCCNNNNNGGC 1 cut(s) 446
BisI GCNGC 3 cut(s) 508, 630, 873
BlsI GCNGC 3 cut(s) 509, 631, 874
BmcAI AGTACT 1 cut(s) 66
Bme1390I CCNGG 3 cut(s) 392, 642, 948
Bme18I GGWCC 1 cut(s) 666
BmgT120I GGNCC 4 cut(s) 124, 439, 666, 1050
BmiI GGNNCC 2 cut(s) 886, 1052
BmrFI CCNGG 3 cut(s) 392, 642, 948
BmrI ACTGGG 1 cut(s) 417
BmsI GCATC 4 cut(s) 9, 599, 968, 1028
BmuI ACTGGG 1 cut(s) 417
BpmI CTGGAG 1 cut(s) 818
BpuMI CCSGG 1 cut(s) 642
BsaJI CCNNGG 5 cut(s) 91, 376, 614, 946, 947
Bsc4I CCNNNNNNNGG 4 cut(s) 139, 169, 271, 1058
Bse1I ACTGG 2 cut(s) 423, 801
Bse3DI GCAATG 1 cut(s) 882
BseBI CCWGG 2 cut(s) 392, 948
BseDI CCNNGG 5 cut(s) 91, 376, 614, 946, 947
BseGI GGATG 2 cut(s) 614, 669
BseLI CCNNNNNNNGG 4 cut(s) 139, 169, 271, 1058
BseMI GCAATG 1 cut(s) 882
BseMII CTCAG 4 cut(s) 272, 315, 594, 738
BseNI ACTGG 2 cut(s) 423, 801
BseRI GAGGAG 1 cut(s) 815
BseXI GCAGC 3 cut(s) 494, 616, 859
BshFI GGCC 6 cut(s) 72, 90, 125, 440, 711, 1051
BsiSI CCGG 2 cut(s) 511, 642
BslFI GGGAC 2 cut(s) 132, 185
BslI CCNNNNNNNGG 4 cut(s) 139, 169, 271, 1058
BsmAI GTCTC 1 cut(s) 304
BsmFI GGGAC 2 cut(s) 132, 185
BsmI GAATGC 1 cut(s) 1045
BsnI GGCC 6 cut(s) 72, 90, 125, 440, 711, 1051
Bsp143I GATC 4 cut(s) 178, 214, 343, 884
Bsp19I CCATGG 2 cut(s) 376, 614
BspACI CCGC 1 cut(s) 937
BspANI GGCC 6 cut(s) 72, 90, 125, 440, 711, 1051
BspCNI CTCAG 4 cut(s) 271, 314, 595, 737
BspHI TCATGA 2 cut(s) 103, 229
BspLI GGNNCC 2 cut(s) 886, 1052
BspPI GGATC 4 cut(s) 222, 351, 879, 892
BsrDI GCAATG 1 cut(s) 882
BsrI ACTGG 2 cut(s) 423, 801
BssECI CCNNGG 5 cut(s) 91, 376, 614, 946, 947
BssMI GATC 4 cut(s) 178, 214, 343, 884
BssT1I CCWWGG 3 cut(s) 91, 376, 614
Bst2UI CCWGG 2 cut(s) 392, 948
Bst4CI ACNGT 2 cut(s) 336, 821
Bst6I CTCTTC 1 cut(s) 1007
BstC8I GCNNGC 4 cut(s) 720, 843, 908, 973
BstDEI CTNAG 7 cut(s) 258, 277, 301, 416, 603, 724, 761
BstDSI CCRYGG 2 cut(s) 376, 614
BstF5I GGATG 2 cut(s) 614, 669
BstH2I RGCGCY 2 cut(s) 452, 1000
BstHHI GCGC 2 cut(s) 451, 999
BstKTI GATC 4 cut(s) 181, 217, 346, 887
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 4 cut(s) 178, 214, 343, 884
BstMWI GCNNNNNNNGC 5 cut(s) 58, 446, 596, 847, 996
BstNI CCWGG 2 cut(s) 392, 948
BstNSI RCATGY 2 cut(s) 690, 975
BstSCI CCNGG 3 cut(s) 390, 640, 946
BstV1I GCAGC 3 cut(s) 494, 616, 859
BstX2I RGATCY 1 cut(s) 884
BstYI RGATCY 1 cut(s) 884
BsuI GTATCC 2 cut(s) 398, 520
BsuRI GGCC 6 cut(s) 72, 90, 125, 440, 711, 1051
BtgI CCRYGG 2 cut(s) 376, 614
BtsCI GGATG 2 cut(s) 614, 669
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 3 cut(s) 483, 585, 600
Cac8I GCNNGC 4 cut(s) 720, 843, 908, 973
CciI TCATGA 2 cut(s) 103, 229
CfoI GCGC 2 cut(s) 451, 999
Cfr13I GGNCC 4 cut(s) 124, 439, 666, 1050
Csp6I GTAC 1 cut(s) 65
CspCI CAANNNNNGTGG 2 cut(s) 729, 764
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 7 cut(s) 258, 277, 301, 416, 603, 724, 761
DpnI GATC 4 cut(s) 180, 216, 345, 886
DpnII GATC 4 cut(s) 178, 214, 343, 884
EaeI YGGCCR 1 cut(s) 709
Eam1104I CTCTTC 1 cut(s) 1007
EarI CTCTTC 1 cut(s) 1007
Eco130I CCWWGG 3 cut(s) 91, 376, 614
Eco147I AGGCCT 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 666
Eco57I CTGAAG 1 cut(s) 953
EcoRII CCWGG 2 cut(s) 390, 946
EcoT14I CCWWGG 3 cut(s) 91, 376, 614
EcoT22I ATGCAT 1 cut(s) 973
ErhI CCWWGG 3 cut(s) 91, 376, 614
FalI AAGNNNNNCTT 2 cut(s) 566, 598
FaqI GGGAC 2 cut(s) 132, 185
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 3 cut(s) 508, 630, 873
FokI GGATG 2 cut(s) 621, 656
Fsp4HI GCNGC 3 cut(s) 508, 630, 873
FspBI CTAG 1 cut(s) 68
GlaI GCGC 2 cut(s) 450, 998
GluI GCNGC 3 cut(s) 508, 630, 873
GsuI CTGGAG 1 cut(s) 818
HaeII RGCGCY 2 cut(s) 452, 1000
HaeIII GGCC 6 cut(s) 72, 90, 125, 440, 711, 1051
HapII CCGG 2 cut(s) 511, 642
HhaI GCGC 2 cut(s) 451, 999
Hin6I GCGC 2 cut(s) 449, 997
HinP1I GCGC 2 cut(s) 449, 997
HindIII AAGCTT 2 cut(s) 635, 843
HinfI GANTC 7 cut(s) 55, 368, 395, 433, 577, 679, 805
HpaII CCGG 2 cut(s) 511, 642
HphI GGTGA 2 cut(s) 800, 817
Hpy166II GTNNAC 2 cut(s) 817, 926
Hpy188I TCNGA 5 cut(s) 219, 261, 304, 400, 571
Hpy188III TCNNGA 5 cut(s) 104, 230, 502, 664, 1036
Hpy8I GTNNAC 2 cut(s) 817, 926
HpyAV CCTTC 2 cut(s) 161, 890
HpyCH4III ACNGT 2 cut(s) 336, 821
HpyCH4V TGCA 8 cut(s) 407, 413, 556, 632, 740, 875, 959, 971
HpyF10VI GCNNNNNNNGC 5 cut(s) 58, 446, 596, 847, 996
HpyF3I CTNAG 7 cut(s) 258, 277, 301, 416, 603, 724, 761
HspAI GCGC 2 cut(s) 449, 997
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 4 cut(s) 178, 214, 343, 884
LmnI GCTCC 2 cut(s) 751, 859
Lsp1109I GCAGC 3 cut(s) 494, 616, 859
LweI GCATC 4 cut(s) 9, 599, 968, 1028
MaeI CTAG 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 32
MalI GATC 4 cut(s) 180, 216, 345, 886
MboI GATC 4 cut(s) 178, 214, 343, 884
MboII GAAGA 2 cut(s) 905, 994
MflI RGATCY 1 cut(s) 884
MlsI TGGCCA 1 cut(s) 711
MluNI TGGCCA 1 cut(s) 711
MlyI GAGTC 1 cut(s) 571
MmeI TCCRAC 1 cut(s) 674
MnlI CCTC 8 cut(s) 258, 516, 598, 686, 733, 793, 845, 1010
Mox20I TGGCCA 1 cut(s) 711
Mph1103I ATGCAT 1 cut(s) 973
MscI TGGCCA 1 cut(s) 711
MseI TTAA 1 cut(s) 564
MslI CAYNNNNRTG 4 cut(s) 132, 186, 198, 687
Msp20I TGGCCA 1 cut(s) 711
MspA1I CMGCKG 1 cut(s) 931
MspI CCGG 2 cut(s) 511, 642
MspR9I CCNGG 3 cut(s) 392, 642, 948
Mva1269I GAATGC 1 cut(s) 1045
MvaI CCWGG 2 cut(s) 392, 948
MwoI GCNNNNNNNGC 5 cut(s) 58, 446, 596, 847, 996
NciI CCSGG 1 cut(s) 642
NcoI CCATGG 2 cut(s) 376, 614
NdeII GATC 4 cut(s) 178, 214, 343, 884
NlaIV GGNNCC 2 cut(s) 886, 1052
NmuCI GTSAC 1 cut(s) 32
NsiI ATGCAT 1 cut(s) 973
NspI RCATGY 2 cut(s) 690, 975
PaeI GCATGC 1 cut(s) 975
PagI TCATGA 2 cut(s) 103, 229
PasI CCCWGGG 1 cut(s) 947
PceI AGGCCT 1 cut(s) 90
PciI ACATGT 1 cut(s) 686
PctI GAATGC 1 cut(s) 1045
PfeI GAWTC 6 cut(s) 55, 368, 395, 433, 679, 805
PflMI CCANNNNNTGG 2 cut(s) 139, 271
PfoI TCCNGGA 2 cut(s) 390, 640
PkrI GCNGC 3 cut(s) 509, 631, 874
PleI GAGTC 1 cut(s) 571
PpsI GAGTC 1 cut(s) 571
PscI ACATGT 1 cut(s) 686
Psp6I CCWGG 2 cut(s) 390, 946
PspGI CCWGG 2 cut(s) 390, 946
PspN4I GGNNCC 2 cut(s) 886, 1052
PspPI GGNCC 4 cut(s) 124, 439, 666, 1050
PsrI GAACNNNNNNTAC 2 cut(s) 761, 793
PsuI RGATCY 1 cut(s) 884
PvuII CAGCTG 1 cut(s) 931
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
RseI CAYNNNNRTG 4 cut(s) 132, 186, 198, 687
SaqAI TTAA 1 cut(s) 564
SatI GCNGC 3 cut(s) 508, 630, 873
Sau3AI GATC 4 cut(s) 178, 214, 343, 884
Sau96I GGNCC 4 cut(s) 124, 439, 666, 1050
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 3 cut(s) 392, 642, 948
SfaNI GCATC 4 cut(s) 9, 599, 968, 1028
SinI GGWCC 1 cut(s) 666
SmiMI CAYNNNNRTG 4 cut(s) 132, 186, 198, 687
SphI GCATGC 1 cut(s) 975
SseBI AGGCCT 1 cut(s) 90
SsiI CCGC 1 cut(s) 937
SspI AATATT 1 cut(s) 920
SspMI CTAG 1 cut(s) 68
StuI AGGCCT 1 cut(s) 90
StyD4I CCNGG 3 cut(s) 390, 640, 946
StyI CCWWGG 3 cut(s) 91, 376, 614
TaaI ACNGT 2 cut(s) 336, 821
TatI WGTACW 1 cut(s) 64
TfiI GAWTC 6 cut(s) 55, 368, 395, 433, 679, 805
Tru1I TTAA 1 cut(s) 564
Tru9I TTAA 1 cut(s) 564
TscAI CASTG 3 cut(s) 483, 592, 607
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 3 cut(s) 507, 629, 872
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 8 cut(s) 150, 255, 303, 336, 369, 483, 614, 994
TspRI CASTG 3 cut(s) 483, 592, 607
Van91I CCANNNNNTGG 2 cut(s) 139, 271
VpaK11BI GGWCC 1 cut(s) 666
XapI RAATTY 2 cut(s) 696, 742
XceI RCATGY 2 cut(s) 690, 975
XspI CTAG 1 cut(s) 68
ZrmI AGTACT 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.