MD02G1020500.v1.1

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000251
Physical Location & Seq
Forward (+)
1456889 .. 1461038
4150 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1020500.v1.1.491

Sequence Viewer

Length: 2805 bp
ATGTCATATACGGGAGGAGATGCACAGGCAGTAGATATCAATCATGAAACCCGATTTGATGATCTCAAGTTAAAATTGGCTGAAATGTTGAATTTAGAATATAAATCAGTGATCATGAAGTATTTTCTCCCAGGAAATACGCGAACTCTCATCACTTTATCCAATGATAAGGACCTGAAAAGGATGTATGAATTCCATGGGAATTCAGTAACTGCTGATGTTTTTGTCCAGGGGAAAGCAGGTTTTGATGCCGAAGCCTTCAACACACCAAAAAGGGCATGTGGGATAAAAGTGGCTGAATCAGTGACCCCTGTTCCCGCCTTCACGACTTCAGCTGCCACTTTACATGCTAGTCCTCTATCAAAACAACCTGGATGTATTATGTCTGTGGAAGAAAGGACCCAAACTGCAGGTGGAGTGGTGCATATGCCTACCATGTCCCCTGCGTTTACATCCACCGATAATGCGGATGCTACTAGTTCCATTCCAACTGGTTCCATATCTGCTACTGCTGATGCAAGTCAGCACAGCTTGGACGTATTTGATATGAACTGTACCCCTGCTGATACTGTTAAGAAGCGAAGGCGCACTGCTGCCTGGAAAATTGGTGCCAACGGTCCTACCATTGGTTCTGTCACTGACCATGTTGGGGAGAAAAGAAAACATATGTCCAAGAAGAAGAATATTCCTAGCCGGAACATTGCTACAGAAACTGATGACGTGGATGAGAGGCAAGATATCCTCCACAGTAAAGATAGTAGTACTAGCAATGACCCTATCCAGGCTAGTCTAGTGGAATCAAATGATGCTCCACCTGAACTTTTACTCAAAATATGGAAAAATGCTATCACTGGCATTGGACAGGAATTCAACAGTGCTAAAGAATTTCGTGATGCGCTGCAAAAATATGCCGTTGCCCATCGTTTCATGTATAAGTTAAAAAAGAATGATACTAACCGTGCAAGTGGCAGATGTATAGTCGAAGACTGTTCCTGGAAAATTTTTGCATCTTGGGACACATCTGTGAAAAAGTTTAGGATAAAGAGTATGACTGAAACGCATACTTGTGAATCAGAGTTCATGAAATCTTATCATCCAAAACGAAGTTGGTTGGTTAGCATCGTGAAAGACAGATTACTTGAGCGCCCACATCTCAAGACGAAAGAACTTGCCAACATCATTCGTCAAGATTTTGGGATTGCTGTGAACTACACTCATGTTTGGCGTGCAGTTGAGGATGCCAAGGAGCGACTTCTAGGTTCGTATAAAGAGGCATATGACCAGTTACCGAGATTTTGTGAGAAGATGACAGAGGCAAATCCTGGCAGTAATATTAAGCTTTTCACTGTTGATGAGAGTAGATTTCAGCGCCTATTTGTGTGTTTTCATGCTTCAATACATGGTTTTCAGAATGGTTGTCGCCCTATTCTTTTTCTCGATGCTGCATCTCTAAAATCAAGATACCATGAGACTTTTTTGGCAGCTACTGCTTTGGATGGAGATGACGGTCTTTTCCCGGTTGCATTTGCTATCGTTGACACTGAGAATGATGATAACTGGCGGTGGTTTTTGGAGCAGTTAAGATCTGTACTTTCAGCTACTCAATCCTTAACTTTTGTCTCGGATAGAGAGAAGGGACTAAAGAAATCAGTGCTCGAAGTATTTGAGAATGCCCACCATGGATATTCTATGCACCACCTTCTGCAAAGCTTCATGAGAAACTTGAATGGTCCATACCATGGAGATGGGAAGGGTTCCTTGCCAATCAATTTTATGGCTGCCGCCCATGCAATCCGACTTGATGGCTTTAAAACAAGTATTGATCAAATTAGACGGGTTTCTGCTCGAGCTTATGCCTGGGTCCAGCAAATCGAACCAGAATGTTGGACAAATGCATTATTTAAAGGAGAGCCCTATAACCATTTCACATCAGATGTTGCAGAGACATACATCAAGTGGATAGAGGAAGTACAGGAGTTACCCATTGTGCCAAAGATTGAAGCGCTTTGTTCTAAGTTGATGGAGTTGATAAATACTCGTCGAACAGATTCAAGTAAGTGGCCCACAAAACTTACTCCATCCAAGGAGGAAAAACTGCAACAAGAAGCCTGTTGCGCATATGGTCTTAAAGTCTTGTTTTCATCCGATACTCTCTTTGAGGTTCACAAGGATTCCATCAACGTTGTGGATATTAGTGAACGGTACTGTAGTTGTCTGGATTGGAATGCAAGTGGTCTACCATGCTGCCATGCTATTGCTGTCTTCAACTGCACTGGTAGGGATGTGTATGATTATTGTTCGAGTTACTATAAATCTGACACCTATCGTTTGACGTATTCTGAGTCCATAAACTCTGCATTGGCCCCTTTTGAGTCTTCGGATGGTGAGATTACTGATGCAGCACATGTGCTTCCTCCATCAGTCTCCAAGCAACAAGAAAAGAAAAGCCAGGCCAAAGCAAAGAGTTTGTCGGCAAGGACAGTTTTTTGCTCTAGGTGCAAGGATTCAGGGCATAATAAAAAAACCTGCAAGGAACCCATGGATGATCCTTTGTCAAGTATGGACCTCATAGATGCTCCTATATCAGGTATGGACCCCGTAGATGCTCCTTCGTCAAGCATCGTCCTCGTAGATGCCCTTTCATCAAGCGTCATCCCCGTCGATGCCCCTCCATCAAGTATCGTCCCCACAGATGCTCCTTCATCAAGTATCGTCCCCATAGATGCCGCTCCGTTGAGTATCGACCACGTAGATGCTCATTCATCAAGTATCGTTCCCGTAGATCCTCCATCAAGTATCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE PB1 SWIM

Protein Analysis

935

Amino Acids

103.78

Weight (kDa)

6.21

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 2 - 69 5.5e-07 PB1 domain
DBD_Tnp_Mut PF03108 282 - 347 4.9e-17 MuDR family transposase
MULE PF10551 477 - 569 6.6e-14 MULE transposase domain
SWIM PF04434 729 - 757 5.2e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 401
Acc16I TGCGCA 1 cut(s) 2116
Acc36I ACCTGC 3 cut(s) 230, 401, 2534
AccB1I GGYRCC 1 cut(s) 608
AccB7I CCANNNNNTGG 1 cut(s) 1739
AccBSI CCGCTC 1 cut(s) 2729
AccI GTMKAC 1 cut(s) 2236
AccII CGCG 1 cut(s) 142
AciI CCGC 5 cut(s) 318, 467, 1561, 1782, 2727
AclI AACGTT 1 cut(s) 2181
AclWI GGATC 2 cut(s) 2540, 2777
AcsI RAATTY 6 cut(s) 91, 191, 202, 866, 884, 999
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 5 cut(s) 556, 763, 1590, 1971, 2204
AfeI AGCGCT 1 cut(s) 2004
AfiI CCNNNNNNNGG 5 cut(s) 626, 649, 781, 1739, 2585
AflIII ACRYGT 1 cut(s) 2404
AgsI TTSAA 8 cut(s) 91, 262, 871, 1395, 1726, 2000, 2052, 2266
AhlI ACTAGT 1 cut(s) 476
AjiI CACGTC 1 cut(s) 721
AjnI CCWGG 9 cut(s) 130, 228, 370, 596, 780, 992, 1321, 1856, 2448
AleI CACNNNNGTG 1 cut(s) 1022
AluBI AGCT 7 cut(s) 335, 531, 1339, 1484, 1598, 1710, 1850
AluI AGCT 7 cut(s) 335, 531, 1339, 1484, 1598, 1710, 1850
Alw21I GWGCWC 1 cut(s) 1656
Alw26I GTCTC 4 cut(s) 1463, 1624, 1937, 2428
AlwI GGATC 2 cut(s) 2540, 2777
AlwNI CAGNNNCTG 3 cut(s) 212, 713, 1487
Ama87I CYCGRG 1 cut(s) 1845
Aor51HI AGCGCT 1 cut(s) 2004
AoxI GGCC 3 cut(s) 2060, 2361, 2451
ApeKI GCWGC 8 cut(s) 335, 593, 898, 1442, 1481, 1778, 2244, 2399
ApoI RAATTY 6 cut(s) 91, 191, 202, 866, 884, 999
ArsI GACNNNNNNTTYG 2 cut(s) 2453, 2485
Asp700I GAANNNNTTC 1 cut(s) 2047
AspLEI GCGC 6 cut(s) 588, 898, 1146, 1371, 2005, 2117
AspS9I GGNCC 9 cut(s) 172, 399, 617, 1730, 1861, 2061, 2362, 2563, 2593
AsuC2I CCSGG 1 cut(s) 1517
AsuHPI GGTGA 1 cut(s) 2396
AvaI CYCGRG 1 cut(s) 1845
AvaII GGWCC 7 cut(s) 172, 399, 617, 1730, 1861, 2563, 2593
BaeI ACNNNNGTAYC 2 cut(s) 2194, 2227
BanI GGYRCC 1 cut(s) 608
BanII GRGCYC 1 cut(s) 1914
BbsI GAAGAC 3 cut(s) 990, 2254, 2367
Bbv12I GWGCWC 1 cut(s) 1656
BbvI GCAGC 8 cut(s) 322, 580, 885, 1429, 1493, 1765, 2231, 2411
BceAI ACGGC 1 cut(s) 896
BcgI CGANNNNNNTGC 2 cut(s) 2608, 2642
BciT130I CCWGG 9 cut(s) 132, 230, 372, 598, 782, 994, 1323, 1858, 2450
BclI TGATCA 2 cut(s) 111, 1822
BcnI CCSGG 1 cut(s) 1517
BcoDI GTCTC 4 cut(s) 1463, 1624, 1937, 2428
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 8 cut(s) 351, 477, 690, 765, 786, 791, 1256, 2493
BfmI CTRYAG 3 cut(s) 408, 705, 2206
BfoI RGCGCY 3 cut(s) 1147, 1372, 2006
BfuAI ACCTGC 3 cut(s) 230, 401, 2534
BglII AGATCT 1 cut(s) 1583
BmcAI AGTACT 1 cut(s) 763
Bme18I GGWCC 7 cut(s) 172, 399, 617, 1730, 1861, 2563, 2593
BmeT110I CYCGRG 1 cut(s) 1845
BmgBI CACGTC 1 cut(s) 721
BmgT120I GGNCC 9 cut(s) 172, 399, 617, 1730, 1861, 2061, 2362, 2563, 2593
BmiI GGNNCC 8 cut(s) 401, 496, 610, 1756, 1862, 2364, 2535, 2595
BpiI GAAGAC 3 cut(s) 990, 2254, 2367
BpuEI CTTGAG 3 cut(s) 50, 1139, 1160
BpuMI CCSGG 1 cut(s) 1517
BsaAI YACGTR 1 cut(s) 2749
BsaBI GATNNNNATC 1 cut(s) 39
BsaJI CCNNGG 9 cut(s) 130, 196, 229, 1242, 1678, 1738, 1857, 2082, 2538
BsaXI ACNNNNNCTCC 2 cut(s) 2680, 2710
Bsc4I CCNNNNNNNGG 5 cut(s) 626, 649, 781, 1739, 2585
Bse1I ACTGG 5 cut(s) 496, 856, 1282, 1562, 2278
Bse3DI GCAATG 2 cut(s) 699, 775
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 9 cut(s) 132, 230, 372, 598, 782, 994, 1323, 1858, 2450
BseDI CCNNGG 9 cut(s) 130, 196, 229, 1242, 1678, 1738, 1857, 2082, 2538
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 5 cut(s) 626, 649, 781, 1739, 2585
BseMI GCAATG 2 cut(s) 699, 775
BseMII CTCAG 2 cut(s) 1533, 2331
BseNI ACTGG 5 cut(s) 496, 856, 1282, 1562, 2278
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 8 cut(s) 322, 580, 885, 1429, 1493, 1765, 2231, 2411
BsgI GTGCAG 2 cut(s) 1248, 2254
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 3 cut(s) 2062, 2363, 2453
BshNI GGYRCC 1 cut(s) 608
BsiHKAI GWGCWC 1 cut(s) 1656
BsiHKCI CYCGRG 1 cut(s) 1845
BsiSI CCGG 2 cut(s) 694, 1517
BslFI GGGAC 5 cut(s) 424, 1028, 1650, 2669, 2699
BslI CCNNNNNNNGG 5 cut(s) 626, 649, 781, 1739, 2585
BsmAI GTCTC 4 cut(s) 1463, 1624, 1937, 2428
BsmFI GGGAC 5 cut(s) 424, 1028, 1650, 2669, 2699
BsmI GAATGC 2 cut(s) 1675, 2230
BsnI GGCC 3 cut(s) 2062, 2363, 2453
BsoBI CYCGRG 1 cut(s) 1845
Bsp1286I GDGCHC 2 cut(s) 1656, 1914
Bsp143I GATC 6 cut(s) 61, 111, 1583, 1822, 2545, 2782
Bsp19I CCATGG 4 cut(s) 196, 1678, 1738, 2538
BspACI CCGC 5 cut(s) 318, 467, 1561, 1782, 2727
BspANI GGCC 3 cut(s) 2062, 2363, 2453
BspCNI CTCAG 2 cut(s) 1534, 2332
BspFNI CGCG 1 cut(s) 142
BspHI TCATGA 4 cut(s) 43, 114, 1080, 1713
BspLI GGNNCC 8 cut(s) 401, 496, 610, 1756, 1862, 2364, 2535, 2595
BspMAI CTGCAG 1 cut(s) 412
BspMI ACCTGC 3 cut(s) 230, 401, 2534
BspPI GGATC 2 cut(s) 2540, 2777
BspT107I GGYRCC 1 cut(s) 608
BsrBI CCGCTC 1 cut(s) 2729
BsrDI GCAATG 2 cut(s) 699, 775
BsrI ACTGG 5 cut(s) 496, 856, 1282, 1562, 2278
BssECI CCNNGG 9 cut(s) 130, 196, 229, 1242, 1678, 1738, 1857, 2082, 2538
BssMI GATC 6 cut(s) 61, 111, 1583, 1822, 2545, 2782
BssT1I CCWWGG 6 cut(s) 196, 1242, 1678, 1738, 2082, 2538
Bst2UI CCWGG 9 cut(s) 132, 230, 372, 598, 782, 994, 1323, 1858, 2450
BstAPI GCANNNNNTGC 1 cut(s) 1487
BstBAI YACGTR 1 cut(s) 2749
BstC8I GCNNGC 1 cut(s) 1227
BstDEI CTNAG 3 cut(s) 1542, 2013, 2340
BstDSI CCRYGG 4 cut(s) 196, 1678, 1738, 2538
BstENI CCTNNNNNAGG 1 cut(s) 2583
BstFNI CGCG 1 cut(s) 142
BstH2I RGCGCY 3 cut(s) 1147, 1372, 2006
BstHHI GCGC 6 cut(s) 588, 898, 1146, 1371, 2005, 2117
BstKTI GATC 6 cut(s) 64, 114, 1586, 1825, 2548, 2785
BstMAI GTCTC 4 cut(s) 1463, 1624, 1937, 2428
BstMBI GATC 6 cut(s) 61, 111, 1583, 1822, 2545, 2782
BstMWI GCNNNNNNNGC 4 cut(s) 1487, 1787, 2114, 2496
BstNI CCWGG 9 cut(s) 132, 230, 372, 598, 782, 994, 1323, 1858, 2450
BstNSI RCATGY 3 cut(s) 282, 350, 2408
BstSFI CTRYAG 3 cut(s) 408, 705, 2206
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 8 cut(s) 322, 580, 885, 1429, 1493, 1765, 2231, 2411
BstV2I GAAGAC 3 cut(s) 990, 2254, 2367
BstX2I RGATCY 2 cut(s) 1583, 2782
BstXI CCANNNNNNTGG 2 cut(s) 1745, 1884
BstYI RGATCY 2 cut(s) 1583, 2782
BsuRI GGCC 3 cut(s) 2062, 2363, 2453
BtgI CCRYGG 4 cut(s) 196, 1678, 1738, 2538
BtrI CACGTC 1 cut(s) 721
BtsI GCAGTG 1 cut(s) 588
BveI ACCTGC 3 cut(s) 230, 401, 2534
Cac8I GCNNGC 1 cut(s) 1227
CaiI CAGNNNCTG 3 cut(s) 212, 713, 1487
CciI TCATGA 4 cut(s) 43, 114, 1080, 1713
CfoI GCGC 6 cut(s) 588, 898, 1146, 1371, 2005, 2117
Cfr13I GGNCC 9 cut(s) 172, 399, 617, 1730, 1861, 2061, 2362, 2563, 2593
CseI GACGC 1 cut(s) 2638
Csp6I GTAC 5 cut(s) 555, 762, 1589, 1970, 2203
CviQI GTAC 5 cut(s) 555, 762, 1589, 1970, 2203
DdeI CTNAG 3 cut(s) 1542, 2013, 2340
DpnI GATC 6 cut(s) 63, 113, 1585, 1824, 2547, 2784
DpnII GATC 6 cut(s) 61, 111, 1583, 1822, 2545, 2782
DraI TTTAAA 2 cut(s) 1810, 1903
Eco130I CCWWGG 6 cut(s) 196, 1242, 1678, 1738, 2082, 2538
Eco24I GRGCYC 1 cut(s) 1914
Eco32I GATATC 2 cut(s) 37, 739
Eco47I GGWCC 7 cut(s) 172, 399, 617, 1730, 1861, 2563, 2593
Eco47III AGCGCT 1 cut(s) 2004
Eco57I CTGAAG 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 1845
EcoNI CCTNNNNNAGG 1 cut(s) 2583
EcoO109I RGGNCCY 2 cut(s) 172, 399
EcoRI GAATTC 3 cut(s) 191, 202, 866
EcoRII CCWGG 9 cut(s) 130, 228, 370, 596, 780, 992, 1321, 1856, 2448
EcoRV GATATC 2 cut(s) 37, 739
EcoT14I CCWWGG 6 cut(s) 196, 1242, 1678, 1738, 2082, 2538
EcoT22I ATGCAT 1 cut(s) 1897
EcoT38I GRGCYC 1 cut(s) 1914
ErhI CCWWGG 6 cut(s) 196, 1242, 1678, 1738, 2082, 2538
FalI AAGNNNNNCTT 3 cut(s) 1742, 1774, 2785
FaqI GGGAC 5 cut(s) 424, 1028, 1650, 2669, 2699
FauI CCCGC 1 cut(s) 325
FauNDI CATATG 4 cut(s) 426, 666, 1276, 2119
FbaI TGATCA 2 cut(s) 111, 1822
FblI GTMKAC 1 cut(s) 2236
FriOI GRGCYC 1 cut(s) 1914
FspBI CTAG 8 cut(s) 351, 477, 690, 765, 786, 791, 1256, 2493
FspI TGCGCA 1 cut(s) 2116
GlaI GCGC 6 cut(s) 587, 897, 1145, 1370, 2004, 2116
HaeII RGCGCY 3 cut(s) 1147, 1372, 2006
HaeIII GGCC 3 cut(s) 2062, 2363, 2453
HapII CCGG 2 cut(s) 694, 1517
HgaI GACGC 1 cut(s) 2638
HhaI GCGC 6 cut(s) 588, 898, 1146, 1371, 2005, 2117
Hin6I GCGC 6 cut(s) 586, 896, 1144, 1369, 2003, 2115
HinP1I GCGC 6 cut(s) 586, 896, 1144, 1369, 2003, 2115
HincII GTYRAC 1 cut(s) 1537
HindII GTYRAC 1 cut(s) 1537
HindIII AAGCTT 2 cut(s) 1337, 1708
HinfI GANTC 8 cut(s) 299, 797, 1070, 2048, 2171, 2342, 2372, 2504
HpaII CCGG 2 cut(s) 694, 1517
HphI GGTGA 1 cut(s) 2396
Hpy166II GTNNAC 6 cut(s) 450, 1207, 1537, 2164, 2198, 2237
Hpy188I TCNGA 9 cut(s) 1075, 1410, 1624, 1796, 1933, 2146, 2317, 2341, 2380
Hpy8I GTNNAC 6 cut(s) 450, 1207, 1537, 2164, 2198, 2237
Hpy99I CGWCG 2 cut(s) 2043, 2663
HpyAV CCTTC 8 cut(s) 268, 331, 576, 1627, 1709, 1744, 2619, 2709
HpyCH4IV ACGT 5 cut(s) 537, 720, 2181, 2333, 2748
HpyF10VI GCNNNNNNNGC 4 cut(s) 1487, 1787, 2114, 2496
HpyF3I CTNAG 3 cut(s) 1542, 2013, 2340
HpySE526I ACGT 5 cut(s) 537, 720, 2181, 2333, 2748
HspAI GCGC 6 cut(s) 586, 896, 1144, 1369, 2003, 2115
Ksp22I TGATCA 2 cut(s) 111, 1822
Kzo9I GATC 6 cut(s) 61, 111, 1583, 1822, 2545, 2782
LmnI GCTCC 7 cut(s) 814, 1246, 1573, 2581, 2611, 2701, 2734
Lsp1109I GCAGC 8 cut(s) 322, 580, 885, 1429, 1493, 1765, 2231, 2411
MaeI CTAG 8 cut(s) 351, 477, 690, 765, 786, 791, 1256, 2493
MaeII ACGT 5 cut(s) 537, 720, 2181, 2333, 2748
MaeIII GTNAC 6 cut(s) 208, 304, 634, 1284, 1977, 2303
MalI GATC 6 cut(s) 63, 113, 1585, 1824, 2547, 2784
MbiI CCGCTC 1 cut(s) 2729
MboI GATC 6 cut(s) 61, 111, 1583, 1822, 2545, 2782
MboII GAAGA 7 cut(s) 404, 688, 691, 995, 1315, 2254, 2367
MflI RGATCY 2 cut(s) 1583, 2782
MhlI GDGCHC 2 cut(s) 1656, 1914
MlyI GAGTC 2 cut(s) 2351, 2381
MmeI TCCRAC 3 cut(s) 512, 1819, 1865
Mph1103I ATGCAT 1 cut(s) 1897
MroXI GAANNNNTTC 1 cut(s) 2047
MseI TTAA 9 cut(s) 71, 573, 938, 1335, 1580, 1610, 1809, 1902, 2127
MslI CAYNNNNRTG 4 cut(s) 1022, 1065, 1743, 2751
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 2 cut(s) 694, 1517
Mva1269I GAATGC 2 cut(s) 1675, 2230
MvaI CCWGG 9 cut(s) 132, 230, 372, 598, 782, 994, 1323, 1858, 2450
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 4 cut(s) 1487, 1787, 2114, 2496
NciI CCSGG 1 cut(s) 1517
NcoI CCATGG 4 cut(s) 196, 1678, 1738, 2538
NdeI CATATG 4 cut(s) 426, 666, 1276, 2119
NdeII GATC 6 cut(s) 61, 111, 1583, 1822, 2545, 2782
NlaIV GGNNCC 8 cut(s) 401, 496, 610, 1756, 1862, 2364, 2535, 2595
NmuCI GTSAC 2 cut(s) 304, 634
NsbI TGCGCA 1 cut(s) 2116
NsiI ATGCAT 1 cut(s) 1897
NspI RCATGY 3 cut(s) 282, 350, 2408
OliI CACNNNNGTG 1 cut(s) 1022
PaeR7I CTCGAG 1 cut(s) 1845
PagI TCATGA 4 cut(s) 43, 114, 1080, 1713
PaqCI CACCTGC 1 cut(s) 401
PciI ACATGT 1 cut(s) 2404
PctI GAATGC 2 cut(s) 1675, 2230
PdmI GAANNNNTTC 1 cut(s) 2047
PfeI GAWTC 6 cut(s) 299, 797, 1070, 2048, 2171, 2504
PflMI CCANNNNNTGG 1 cut(s) 1739
PfoI TCCNGGA 1 cut(s) 992
PleI GAGTC 2 cut(s) 2350, 2380
PpsI GAGTC 2 cut(s) 2350, 2380
Ppu21I YACGTR 1 cut(s) 2749
PpuMI RGGWCCY 2 cut(s) 172, 399
PscI ACATGT 1 cut(s) 2404
Psp1406I AACGTT 1 cut(s) 2181
Psp5II RGGWCCY 2 cut(s) 172, 399
Psp6I CCWGG 9 cut(s) 130, 228, 370, 596, 780, 992, 1321, 1856, 2448
PspGI CCWGG 9 cut(s) 130, 228, 370, 596, 780, 992, 1321, 1856, 2448
PspN4I GGNNCC 8 cut(s) 401, 496, 610, 1756, 1862, 2364, 2535, 2595
PspPI GGNCC 9 cut(s) 172, 399, 617, 1730, 1861, 2061, 2362, 2563, 2593
PspPPI RGGWCCY 2 cut(s) 172, 399
PspXI VCTCGAGB 1 cut(s) 1845
PstI CTGCAG 1 cut(s) 412
PstNI CAGNNNCTG 3 cut(s) 212, 713, 1487
PsuI RGATCY 2 cut(s) 1583, 2782
PvuII CAGCTG 1 cut(s) 335
RsaI GTAC 5 cut(s) 556, 763, 1590, 1971, 2204
RsaNI GTAC 5 cut(s) 555, 762, 1589, 1970, 2203
RseI CAYNNNNRTG 4 cut(s) 1022, 1065, 1743, 2751
SaqAI TTAA 9 cut(s) 71, 573, 938, 1335, 1580, 1610, 1809, 1902, 2127
Sau3AI GATC 6 cut(s) 61, 111, 1583, 1822, 2545, 2782
Sau96I GGNCC 9 cut(s) 172, 399, 617, 1730, 1861, 2061, 2362, 2563, 2593
ScaI AGTACT 1 cut(s) 763
SchI GAGTC 2 cut(s) 2351, 2381
SduI GDGCHC 2 cut(s) 1656, 1914
SfcI CTRYAG 3 cut(s) 408, 705, 2206
Sfr274I CTCGAG 1 cut(s) 1845
SinI GGWCC 7 cut(s) 172, 399, 617, 1730, 1861, 2563, 2593
SlaI CTCGAG 1 cut(s) 1845
SmiMI CAYNNNNRTG 4 cut(s) 1022, 1065, 1743, 2751
SmlI CTYRAG 4 cut(s) 65, 1139, 1154, 1845
SmoI CTYRAG 4 cut(s) 65, 1139, 1154, 1845
SpeI ACTAGT 1 cut(s) 476
SsiI CCGC 5 cut(s) 318, 467, 1561, 1782, 2727
SspI AATATT 2 cut(s) 685, 1333
SspMI CTAG 8 cut(s) 351, 477, 690, 765, 786, 791, 1256, 2493
StyI CCWWGG 6 cut(s) 196, 1242, 1678, 1738, 2082, 2538
TaiI ACGT 5 cut(s) 540, 723, 2184, 2336, 2751
TaqI TCGA 9 cut(s) 981, 1437, 1656, 1846, 1872, 2041, 2300, 2661, 2742
TatI WGTACW 3 cut(s) 761, 1588, 1969
TauI GCSGC 2 cut(s) 1784, 2729
TfiI GAWTC 6 cut(s) 299, 797, 1070, 2048, 2171, 2504
Tru1I TTAA 9 cut(s) 71, 573, 938, 1335, 1580, 1610, 1809, 1902, 2127
Tru9I TTAA 9 cut(s) 71, 573, 938, 1335, 1580, 1610, 1809, 1902, 2127
TseFI GTSAC 2 cut(s) 304, 634
TseI GCWGC 8 cut(s) 335, 593, 898, 1442, 1481, 1778, 2244, 2399
Tsp45I GTSAC 2 cut(s) 304, 634
TspGWI ACGGA 1 cut(s) 2721
Van91I CCANNNNNTGG 1 cut(s) 1739
VpaK11BI GGWCC 7 cut(s) 172, 399, 617, 1730, 1861, 2563, 2593
XagI CCTNNNNNAGG 1 cut(s) 2583
XapI RAATTY 6 cut(s) 91, 191, 202, 866, 884, 999
XceI RCATGY 3 cut(s) 282, 350, 2408
XcmI CCANNNNNNNNNTGG 3 cut(s) 410, 1104, 2182
XhoI CTCGAG 1 cut(s) 1845
XmiI GTMKAC 1 cut(s) 2236
XmnI GAANNNNTTC 1 cut(s) 2047
XspI CTAG 8 cut(s) 351, 477, 690, 765, 786, 791, 1256, 2493
ZrmI AGTACT 1 cut(s) 763
Zsp2I ATGCAT 1 cut(s) 1897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.