Rorug01G0473900

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000251
Physical Location & Seq
Forward (+)
56474709 .. 56476195
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0473900.1

Sequence Viewer

Length: 387 bp
ATGCAGATCTTTGTGAAAACCCTAACCGGGAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCGCCGGACCAGCAGAGGCTCATTTTCGCCGGAAAGCAGCTCGAGGATGGCCGTACTCTTGCCGATTACAACATTCAGAAAGAATCAACTCTGCATTTGGTTCTGAGGCTCCGTGGTGGTATTATTGAGCCTTCTCTCATGGCATTGGCTAGGAAGTACAACCAAGAGAAGATGATCTGCCGCAAGTGCTACGCACGCCTTCACCCCCGTGCTGTCAACTGCAGGAAGAAGAAGTGTGGACACAGCAACCAGCTGAGGCCAAAGAAGAAGATCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE PB1 SWIM

Protein Analysis

128

Amino Acids

14.69

Weight (kDa)

9.94

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 71 8.9e-18 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 74 1.1e-32 Ubiquitin family
Ribosomal_L40e PF01020 78 - 127 3.7e-31 Ribosomal L40e family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 110, 289
AclWI GGATC 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 157
AfaI GTAC 2 cut(s) 163, 266
AfiI CCNNNNNNNGG 2 cut(s) 27, 97
AjnI CCWGG 1 cut(s) 90
AleI CACNNNNGTG 1 cut(s) 315
AluBI AGCT 2 cut(s) 148, 361
AluI AGCT 2 cut(s) 148, 361
AlwI GGATC 1 cut(s) 82
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 3 cut(s) 81, 157, 365
ApeKI GCWGC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 115
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 2 cut(s) 31, 302
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 38
BbvCI CCTCAGC 1 cut(s) 362
BbvI GCAGC 1 cut(s) 157
BccI CCATC 3 cut(s) 44, 74, 149
BceAI ACGGC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 92
BciVI GTATCC 1 cut(s) 116
BcnI CCSGG 1 cut(s) 28
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 328
BfuI GTATCC 1 cut(s) 116
BglII AGATCT 1 cut(s) 6
BisI GCNGC 2 cut(s) 146, 289
BlsI GCNGC 2 cut(s) 147, 290
Bme1390I CCNGG 2 cut(s) 28, 92
Bme18I GGWCC 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 2 cut(s) 28, 92
BpiI GAAGAC 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 362
BpuEI CTTGAG 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 97
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 2 cut(s) 27, 97
BseMII CTCAG 2 cut(s) 203, 353
BseXI GCAGC 1 cut(s) 157
BshFI GGCC 3 cut(s) 83, 159, 367
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 3 cut(s) 27, 113, 138
BslI CCNNNNNNNGG 2 cut(s) 27, 97
BsnI GGCC 3 cut(s) 83, 159, 367
BsoBI CYCGRG 1 cut(s) 149
Bsp143I GATC 4 cut(s) 6, 87, 282, 378
BspACI CCGC 2 cut(s) 110, 289
BspANI GGCC 3 cut(s) 83, 159, 367
BspCNI CTCAG 2 cut(s) 204, 354
BspLI GGNNCC 1 cut(s) 218
BspMAI CTGCAG 1 cut(s) 332
BspPI GGATC 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 4 cut(s) 6, 87, 282, 378
Bst2UI CCWGG 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 2 cut(s) 212, 362
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 4 cut(s) 9, 90, 285, 381
BstMBI GATC 4 cut(s) 6, 87, 282, 378
BstMWI GCNNNNNNNGC 3 cut(s) 118, 294, 303
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 2 cut(s) 26, 90
BstSFI CTRYAG 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 157
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 2 cut(s) 6, 87
BstYI RGATCY 2 cut(s) 6, 87
BsuI GTATCC 1 cut(s) 116
BsuRI GGCC 3 cut(s) 83, 159, 367
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 115
Csp6I GTAC 2 cut(s) 162, 265
CviAII CATG 1 cut(s) 247
CviJI RGCY 9 cut(s) 83, 127, 148, 159, 217, 238, 257, 361, 367
CviKI_1 RGCY 9 cut(s) 83, 127, 148, 159, 217, 238, 257, 361, 367
CviQI GTAC 2 cut(s) 162, 265
DdeI CTNAG 2 cut(s) 212, 362
DpnI GATC 4 cut(s) 8, 89, 284, 380
DpnII GATC 4 cut(s) 6, 87, 282, 378
EaeI YGGCCR 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 115
Eco88I CYCGRG 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 90
FaeI CATG 1 cut(s) 250
FaiI YATR 1 cut(s) 248
FatI CATG 1 cut(s) 246
FauI CCCGC 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 146, 289
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 2 cut(s) 146, 289
FspBI CTAG 1 cut(s) 258
GluI GCNGC 2 cut(s) 146, 289
HaeIII GGCC 3 cut(s) 83, 159, 367
HapII CCGG 3 cut(s) 27, 113, 138
Hin1II CATG 1 cut(s) 250
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 2 cut(s) 53, 191
HpaII CCGG 3 cut(s) 27, 113, 138
HphI GGTGA 2 cut(s) 31, 302
Hpy166II GTNNAC 2 cut(s) 325, 347
Hpy188I TCNGA 2 cut(s) 186, 213
Hpy8I GTNNAC 2 cut(s) 325, 347
HpyAV CCTTC 3 cut(s) 95, 249, 317
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 3 cut(s) 4, 202, 330
HpyF10VI GCNNNNNNNGC 3 cut(s) 118, 294, 303
HpyF3I CTNAG 2 cut(s) 212, 362
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 1 cut(s) 250
Kzo9I GATC 4 cut(s) 6, 87, 282, 378
LmnI GCTCC 1 cut(s) 222
LpnPI CCDG 9 cut(s) 40, 70, 77, 104, 126, 131, 151, 316, 371
Lsp1109I GCAGC 1 cut(s) 157
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 75
MalI GATC 4 cut(s) 8, 89, 284, 380
MboI GATC 4 cut(s) 6, 87, 282, 378
MboII GAAGA 5 cut(s) 43, 289, 346, 349, 385
MflI RGATCY 2 cut(s) 6, 87
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 5 cut(s) 40, 117, 145, 207, 357
MslI CAYNNNNRTG 1 cut(s) 315
MspA1I CMGCKG 1 cut(s) 361
MspI CCGG 3 cut(s) 27, 113, 138
MspR9I CCNGG 2 cut(s) 28, 92
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 3 cut(s) 118, 294, 303
NciI CCSGG 1 cut(s) 28
NdeII GATC 4 cut(s) 6, 87, 282, 378
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 1 cut(s) 218
OliI CACNNNNGTG 1 cut(s) 315
PaeR7I CTCGAG 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 1 cut(s) 191
PflFI GACNNNGTC 1 cut(s) 74
PfoI TCCNGGA 1 cut(s) 90
PkrI GCNGC 2 cut(s) 147, 290
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 1 cut(s) 115
PspXI VCTCGAGB 1 cut(s) 149
PstI CTGCAG 1 cut(s) 332
PsuI RGATCY 2 cut(s) 6, 87
PsyI GACNNNGTC 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 361
RsaI GTAC 2 cut(s) 163, 266
RsaNI GTAC 2 cut(s) 162, 265
RseI CAYNNNNRTG 1 cut(s) 315
SatI GCNGC 2 cut(s) 146, 289
Sau3AI GATC 4 cut(s) 6, 87, 282, 378
Sau96I GGNCC 1 cut(s) 115
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 2 cut(s) 28, 92
SetI ASST 5 cut(s) 51, 78, 106, 150, 363
SfcI CTRYAG 1 cut(s) 328
Sfr274I CTCGAG 1 cut(s) 149
SinI GGWCC 1 cut(s) 115
SlaI CTCGAG 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 2 cut(s) 44, 149
SmoI CTYRAG 2 cut(s) 44, 149
SsiI CCGC 2 cut(s) 110, 289
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 2 cut(s) 26, 90
TaiI ACGT 1 cut(s) 78
TaqI TCGA 3 cut(s) 51, 69, 150
TatI WGTACW 1 cut(s) 264
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 1 cut(s) 191
TseI GCWGC 1 cut(s) 145
TspGWI ACGGA 1 cut(s) 209
Tth111I GACNNNGTC 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 115
XhoI CTCGAG 1 cut(s) 149
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.