MD12G1244100.v1.1

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000251
Physical Location & Seq
Reverse (-)
31488155 .. 31492119
3965 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1244100.v1.1.491

Sequence Viewer

Length: 2250 bp
ATGGCTAACCACGATTTGATGCTTGGGCAAAGTCACAATTTAGCGCTTGGGCAGAATCAGCAAGTACTGGGCCACAATCATAACATAGGACTTGGGCAAAATCATGATTTTCAATTGGGACAGTCTAGTGAGCATCATTTGGGTTTGGGACAGGCCCATGACCATGACGTGGGTTTAGGGCACGCTGATCATGAATTGGGTTTAGGACAGAGCCATGACCAAGAAGGGGATGATGGTCACAGCTATGGGCATGATAACGAGTTAGGTGTGGATCAGAAACCTAATCATGATGACCATGAAATGGCTCTTCCTACTCAGAACCATAATATGGTCTTAGAGAACAATGAACTGGCCGTCTCAGAGGGCCAAGAACTTGATGAAAATATGGAACTGTCTATGGTTCAAAATAATGAAATGGGGATAGAATCTGCCCATGGTTTGAGTATCCAGGAATCTGATTTTGCACTCAGCCCCAGTCCTGTGATTCAGGCCCGTATGGCGCATGTAAATCCCAATTATGAATTGTCAGTGGGGCAAGAGTTCCCTGATGTCAAGAGCTGCCGGAGGGCACTAAGGGATACTGCTATTGCTTTACACTTTGAAATGCAGACTATTAAATCTGACAAGACTCGCTTCACTGCCAAATGTGCCACTGAGGGATGCCCATGGCGTATTCATGCTGCAAAGCTTCCTGGAGTTCCAACTTTCACAATCAGGACCATCATTGATAATCATACATGTGGAGGAATTTCTCATCTTGGCCATCAGCAAGCCTCAGTTCAATGGGTTGCAAATTCTGTGGAGCAACGGCTTAGAGAGAACCCTAATTACAAGCCAAAGGAGATACTGGAGGAGATTCACCGAGTTCATGGTATCACCTTATCATACAAGCAAGCTTGGCGAGGCAAGGAGCGTATCATGGCTGCAATGCGTGGTTCCTTTGAAGAAGGGTATCGCTTGCTTCCACAATATTGTGAACAGCTTAAACGGACAAACCCAGGGAGTATTGCATCCGTCTATGCATGCGTGGATGATAACAGCTTCCAACGCCTCTTCATATCATATCAGGCATCAATTTATGGTTTCCTGAATGCTTGTCGGCCCCTCCTTGGACTTGATAGGACATATTTGAAAAGTAAGTATCTGGGAACTTTGCTTCTTGCGACCGGTTTTGATGGTGATGGTGCTCTCTTTCCTCTGGCATTTGGGGTTGTTGATGAGGAGAATGATGATAACTGGATGTGGTTTCTTTCTGAACTTCATAATCTGCTTGAGATTAATACAGAAAATATGCCTAGGCTTACAATTTTGTCAGACAGGCAGAAGGGCATTGTAGATGGAGTTGAAGCAAACTTTCCCACTGCTTTTCATGGATTTTGCATGCGTCACTTGAGTGATAGCTTCCGCAAAGAGTTTAACAATACAATGCTTGTTAATCTTTTATGGGAGGCTGCTCAAGTTCTCACTGTTATAGAATTTGAAGCAAAAATTTTGGAGATTGAAGAGATATCACAAGATGCTGCATATTGGATTCGGCGAATTCCACCTCGCTTGTGGGCTACTGCTTATTTTGAGGGAACAAGATTTGGGCATTTGACAGCTAACGTAGTTGAATCTCTAAATGCTTGGATATTGGAGGCGTCGGGGCTTCCAATCATTCAGATGATGGAATACGTCAGAAGGCAGCTGATGACTTGGTTCAATGAGCGTCGAGAGATCAGTATGCAGTGGACATCGATTCTTGTGCCCAGTGCAGAGAGACGTGTTTTGGACGCTGAAGAGCGTGCACGCACTTATCAGGTCCTTCGTGCTAATGAGGCTGAATTTGAAGTTATATCCCATGAAGGGACGAACATAGTGGACATTCGAAACCGTTGCTGCCTTTGTCGGGCCTGGCAGCTTTATGGTTTGCCATGTGCACATGCCGTTGCAGCACTTAAATCGTGCAGGCAGCAAGTCAACCGATTTACAGAGAGCTGCTTCACAGTCACCACCTATCGGAAGACATACTCACAAACAATACATCCTATTCCAGACAAGTCCCTCTGGAAGGAGTTATCCGAGGGAGATCCAAATGGGAGCATGATTGTTGATGTTCTAATCAATCCACCTAAGTCCCTCCGCCCACCAGGACGGCCGAGAAAGAAGCGTGTCCGAGCAGAAGACCGTGGCCGTGTGAAGCGAGTGGTGCATTGTAGTCGGTGCAATCAAACCGGCCACTTTAGGACGACTTGTGCGGCCCCCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

750

Amino Acids

84.97

Weight (kDa)

6.04

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 174 - 238 1.7e-27 MuDR family transposase
MULE PF10551 370 - 465 2.2e-19 MULE transposase domain
SWIM PF04434 620 - 649 1.8e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 169, 301, 328
AciI CCGC 3 cut(s) 1405, 2122, 2237
AclWI GGATC 2 cut(s) 279, 2063
AcoI YGGCCR 5 cut(s) 351, 760, 2135, 2170, 2215
AcsI RAATTY 6 cut(s) 747, 793, 1475, 1488, 1539, 1823
AcuI CTGAAG 1 cut(s) 1797
AcyI GRCGYC 1 cut(s) 1640
AfaI GTAC 1 cut(s) 66
AfeI AGCGCT 1 cut(s) 45
AfiI CCNNNNNNNGG 9 cut(s) 169, 226, 301, 328, 1109, 1845, 1888, 1998, 2050
AflIII ACRYGT 2 cut(s) 737, 1762
AgeI ACCGGT 1 cut(s) 1166
AjiI CACGTC 2 cut(s) 169, 1763
AjnI CCWGG 5 cut(s) 447, 691, 997, 1892, 2128
AleI CACNNNNGTG 1 cut(s) 1392
Alw21I GWGCWC 3 cut(s) 1189, 1789, 1921
Alw26I GTCTC 2 cut(s) 361, 1753
Alw44I GTGCAC 2 cut(s) 1785, 1917
AlwI GGATC 2 cut(s) 279, 2063
Aor51HI AGCGCT 1 cut(s) 45
ApaLI GTGCAC 2 cut(s) 1785, 1917
ApoI RAATTY 6 cut(s) 747, 793, 1475, 1488, 1539, 1823
AseI ATTAAT 1 cut(s) 1278
AsiGI ACCGGT 1 cut(s) 1166
AspA2I CCTAGG 1 cut(s) 1295
AspLEI GCGC 2 cut(s) 46, 502
AspS9I GGNCC 9 cut(s) 70, 154, 364, 490, 717, 1101, 1801, 1890, 2239
AsuHPI GGTGA 4 cut(s) 851, 868, 1190, 1981
AsuII TTCGAA 1 cut(s) 1867
AvaII GGWCC 2 cut(s) 717, 1801
AvrII CCTAGG 1 cut(s) 1295
BaeGI GKGCMC 5 cut(s) 183, 571, 1749, 1789, 1921
BalI TGGCCA 1 cut(s) 762
BbsI GAAGAC 2 cut(s) 2009, 2169
Bbv12I GWGCWC 3 cut(s) 1189, 1789, 1921
BccI CCATC 7 cut(s) 227, 728, 771, 1169, 1175, 1331, 1660
BceAI ACGGC 5 cut(s) 338, 824, 1910, 2150, 2157
BcgI CGANNNNNNTGC 8 cut(s) 1726, 1760, 1857, 1891, 1923, 1957, 2180, 2214
BciT130I CCWGG 5 cut(s) 449, 693, 999, 1894, 2130
BciVI GTATCC 2 cut(s) 455, 571
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 2 cut(s) 361, 1753
BfaI CTAG 3 cut(s) 126, 1296, 2248
BfoI RGCGCY 1 cut(s) 47
BfuI GTATCC 2 cut(s) 455, 571
BglI GCCNNNNNGGC 1 cut(s) 497
BlnI CCTAGG 1 cut(s) 1295
BmcAI AGTACT 1 cut(s) 66
Bme1390I CCNGG 5 cut(s) 449, 693, 999, 1894, 2130
Bme18I GGWCC 2 cut(s) 717, 1801
BmgBI CACGTC 2 cut(s) 169, 1763
BmgT120I GGNCC 9 cut(s) 70, 154, 364, 490, 717, 1101, 1801, 1890, 2239
BmiI GGNNCC 3 cut(s) 937, 1103, 2241
BmrFI CCNGG 5 cut(s) 449, 693, 999, 1894, 2130
BmrI ACTGGG 3 cut(s) 77, 468, 1743
BmsI GCATC 6 cut(s) 9, 142, 650, 1019, 1079, 1507
BmuI ACTGGG 3 cut(s) 77, 468, 1743
BpiI GAAGAC 2 cut(s) 2009, 2169
BpmI CTGGAG 2 cut(s) 714, 869
Bpu14I TTCGAA 1 cut(s) 1867
BpuEI CTTGAG 3 cut(s) 1292, 1411, 1440
Bsa29I ATCGAT 1 cut(s) 1736
BsaHI GRCGYC 1 cut(s) 1640
BsaJI CCNNGG 8 cut(s) 433, 665, 997, 998, 1108, 1295, 2061, 2167
BsaWI WCCGGW 1 cut(s) 1166
Bsc4I CCNNNNNNNGG 9 cut(s) 169, 226, 301, 328, 1109, 1845, 1888, 1998, 2050
Bse118I RCCGGY 2 cut(s) 1166, 2213
Bse1I ACTGG 6 cut(s) 72, 354, 474, 852, 1241, 1749
Bse3DI GCAATG 1 cut(s) 933
BseBI CCWGG 5 cut(s) 449, 693, 999, 1894, 2130
BseCI ATCGAT 1 cut(s) 1736
BseDI CCNNGG 8 cut(s) 433, 665, 997, 998, 1108, 1295, 2061, 2167
BseGI GGATG 6 cut(s) 235, 665, 1010, 1036, 1245, 2023
BseLI CCNNNNNNNGG 9 cut(s) 169, 226, 301, 328, 1109, 1845, 1888, 1998, 2050
BseMI GCAATG 1 cut(s) 933
BseMII CTCAG 5 cut(s) 329, 372, 481, 645, 789
BseNI ACTGG 6 cut(s) 72, 354, 474, 852, 1241, 1749
BseRI GAGGAG 2 cut(s) 866, 1235
BseSI GKGCMC 5 cut(s) 183, 571, 1749, 1789, 1921
BseX3I CGGCCG 1 cut(s) 2135
BsgI GTGCAG 2 cut(s) 1773, 1966
Bsh1285I CGRYCG 2 cut(s) 1167, 2138
BshTI ACCGGT 1 cut(s) 1166
BshVI ATCGAT 1 cut(s) 1736
BsiEI CGRYCG 2 cut(s) 1167, 2138
BsiHKAI GWGCWC 3 cut(s) 1189, 1789, 1921
BsiSI CCGG 3 cut(s) 562, 1167, 2214
BslFI GGGAC 5 cut(s) 132, 162, 1861, 2026, 2101
BslI CCNNNNNNNGG 9 cut(s) 169, 226, 301, 328, 1109, 1845, 1888, 1998, 2050
BsmAI GTCTC 2 cut(s) 361, 1753
BsmBI CGTCTC 2 cut(s) 361, 1753
BsmFI GGGAC 5 cut(s) 132, 162, 1861, 2026, 2101
BsmI GAATGC 1 cut(s) 1096
Bsp119I TTCGAA 1 cut(s) 1867
Bsp1286I GDGCHC 6 cut(s) 183, 571, 1189, 1749, 1789, 1921
Bsp143I GATC 4 cut(s) 187, 271, 1716, 2068
Bsp19I CCATGG 2 cut(s) 433, 665
BspACI CCGC 3 cut(s) 1405, 2122, 2237
BspCNI CTCAG 5 cut(s) 328, 371, 480, 646, 788
BspDI ATCGAT 1 cut(s) 1736
BspHI TCATGA 3 cut(s) 103, 190, 286
BspLI GGNNCC 3 cut(s) 937, 1103, 2241
BspPI GGATC 2 cut(s) 279, 2063
BspQI GCTCTTC 2 cut(s) 312, 1773
BspT104I TTCGAA 1 cut(s) 1867
BsrDI GCAATG 1 cut(s) 933
BsrFI RCCGGY 2 cut(s) 1166, 2213
BsrI ACTGG 6 cut(s) 72, 354, 474, 852, 1241, 1749
BssAI RCCGGY 2 cut(s) 1166, 2213
BssECI CCNNGG 8 cut(s) 433, 665, 997, 998, 1108, 1295, 2061, 2167
BssMI GATC 4 cut(s) 187, 271, 1716, 2068
BssNI GRCGYC 1 cut(s) 1640
BssT1I CCWWGG 4 cut(s) 433, 665, 1108, 1295
Bst2UI CCWGG 5 cut(s) 449, 693, 999, 1894, 2130
Bst4CI ACNGT 6 cut(s) 123, 393, 1468, 1874, 1987, 2168
Bst6I CTCTTC 4 cut(s) 312, 1058, 1497, 1773
BstACI GRCGYC 1 cut(s) 1640
BstBI TTCGAA 1 cut(s) 1867
BstC8I GCNNGC 9 cut(s) 183, 771, 894, 959, 1024, 1382, 1785, 1789, 1949
BstDEI CTNAG 9 cut(s) 315, 334, 358, 467, 572, 654, 775, 812, 2112
BstDSI CCRYGG 3 cut(s) 433, 665, 2167
BstENI CCTNNNNNAGG 1 cut(s) 2048
BstF5I GGATG 6 cut(s) 235, 665, 1010, 1036, 1245, 2023
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 2 cut(s) 46, 502
BstKTI GATC 4 cut(s) 190, 274, 1719, 2071
BstMAI GTCTC 2 cut(s) 361, 1753
BstMBI GATC 4 cut(s) 187, 271, 1716, 2068
BstMCI CGRYCG 2 cut(s) 1167, 2138
BstMWI GCNNNNNNNGC 8 cut(s) 58, 497, 647, 898, 1047, 1817, 1931, 2188
BstNI CCWGG 5 cut(s) 449, 693, 999, 1894, 2130
BstNSI RCATGY 5 cut(s) 506, 741, 1026, 1384, 1925
BstSCI CCNGG 5 cut(s) 447, 691, 997, 1892, 2128
BstSLI GKGCMC 5 cut(s) 183, 571, 1749, 1789, 1921
BstV2I GAAGAC 2 cut(s) 2009, 2169
BstX2I RGATCY 1 cut(s) 2068
BstYI RGATCY 1 cut(s) 2068
BstZI CGGCCG 1 cut(s) 2135
Bsu15I ATCGAT 1 cut(s) 1736
BsuI GTATCC 2 cut(s) 455, 571
BsuTUI ATCGAT 1 cut(s) 1736
BtgI CCRYGG 3 cut(s) 433, 665, 2167
BtrI CACGTC 2 cut(s) 169, 1763
BtsCI GGATG 6 cut(s) 235, 665, 1010, 1036, 1245, 2023
BtsI GCAGTG 3 cut(s) 636, 1359, 1733
BtsIMutI CAGTG 7 cut(s) 534, 636, 651, 1359, 1464, 1733, 1756
Cac8I GCNNGC 9 cut(s) 183, 771, 894, 959, 1024, 1382, 1785, 1789, 1949
CciI TCATGA 3 cut(s) 103, 190, 286
CfoI GCGC 2 cut(s) 46, 502
Cfr10I RCCGGY 2 cut(s) 1166, 2213
Cfr13I GGNCC 9 cut(s) 70, 154, 364, 490, 717, 1101, 1801, 1890, 2239
ClaI ATCGAT 1 cut(s) 1736
CseI GACGC 4 cut(s) 1373, 1629, 1697, 1781
Csp6I GTAC 1 cut(s) 65
CspAI ACCGGT 1 cut(s) 1166
CspCI CAANNNNNGTGG 4 cut(s) 780, 815, 1533, 1568
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 9 cut(s) 315, 334, 358, 467, 572, 654, 775, 812, 2112
DpnI GATC 4 cut(s) 189, 273, 1718, 2070
DpnII GATC 4 cut(s) 187, 271, 1716, 2068
EaeI YGGCCR 5 cut(s) 351, 760, 2135, 2170, 2215
EagI CGGCCG 1 cut(s) 2135
Eam1104I CTCTTC 4 cut(s) 312, 1058, 1497, 1773
EarI CTCTTC 4 cut(s) 312, 1058, 1497, 1773
EciI GGCGGA 1 cut(s) 2111
EclXI CGGCCG 1 cut(s) 2135
Eco130I CCWWGG 4 cut(s) 433, 665, 1108, 1295
Eco32I GATATC 1 cut(s) 1509
Eco47I GGWCC 2 cut(s) 717, 1801
Eco47III AGCGCT 1 cut(s) 45
Eco52I CGGCCG 1 cut(s) 2135
Eco57I CTGAAG 1 cut(s) 1797
EcoNI CCTNNNNNAGG 1 cut(s) 2048
EcoO109I RGGNCCY 1 cut(s) 1801
EcoRI GAATTC 1 cut(s) 1539
EcoRII CCWGG 5 cut(s) 447, 691, 997, 1892, 2128
EcoRV GATATC 1 cut(s) 1509
EcoT14I CCWWGG 4 cut(s) 433, 665, 1108, 1295
EcoT22I ATGCAT 1 cut(s) 1024
ErhI CCWWGG 4 cut(s) 433, 665, 1108, 1295
Esp3I CGTCTC 2 cut(s) 361, 1753
FalI AAGNNNNNCTT 2 cut(s) 617, 649
FaqI GGGAC 5 cut(s) 132, 162, 1861, 2026, 2101
FbaI TGATCA 1 cut(s) 187
FokI GGATG 6 cut(s) 242, 672, 997, 1043, 1252, 2010
FspBI CTAG 3 cut(s) 126, 1296, 2248
GlaI GCGC 2 cut(s) 45, 501
GsuI CTGGAG 2 cut(s) 714, 869
HaeII RGCGCY 1 cut(s) 47
HapII CCGG 3 cut(s) 562, 1167, 2214
HgaI GACGC 4 cut(s) 1373, 1629, 1697, 1781
HhaI GCGC 2 cut(s) 46, 502
Hin1I GRCGYC 1 cut(s) 1640
Hin6I GCGC 2 cut(s) 44, 500
HinP1I GCGC 2 cut(s) 44, 500
HincII GTYRAC 1 cut(s) 1960
HindII GTYRAC 1 cut(s) 1960
HindIII AAGCTT 2 cut(s) 686, 894
HinfI GANTC 9 cut(s) 55, 425, 452, 484, 628, 856, 1531, 1613, 1738
HpaII CCGG 3 cut(s) 562, 1167, 2214
HphI GGTGA 4 cut(s) 851, 868, 1190, 1981
Hpy166II GTNNAC 6 cut(s) 977, 1731, 1787, 1861, 1919, 1960
Hpy188III TCNNGA 9 cut(s) 104, 191, 287, 553, 715, 1087, 1712, 2033, 2047
Hpy8I GTNNAC 6 cut(s) 977, 1731, 1787, 1861, 1919, 1960
Hpy99I CGWCG 2 cut(s) 1645, 1713
HpyAV CCTTC 7 cut(s) 218, 941, 1318, 1674, 1814, 1838, 2044
HpyCH4III ACNGT 6 cut(s) 123, 393, 1468, 1874, 1987, 2168
HpyCH4IV ACGT 4 cut(s) 168, 1605, 1674, 1762
HpyF10VI GCNNNNNNNGC 8 cut(s) 58, 497, 647, 898, 1047, 1817, 1931, 2188
HpyF3I CTNAG 9 cut(s) 315, 334, 358, 467, 572, 654, 775, 812, 2112
HpySE526I ACGT 4 cut(s) 168, 1605, 1674, 1762
Hsp92I GRCGYC 1 cut(s) 1640
HspAI GCGC 2 cut(s) 44, 500
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 4 cut(s) 187, 271, 1716, 2068
LguI GCTCTTC 2 cut(s) 312, 1773
LmnI GCTCC 3 cut(s) 802, 910, 2079
LweI GCATC 6 cut(s) 9, 142, 650, 1019, 1079, 1507
MaeI CTAG 3 cut(s) 126, 1296, 2248
MaeII ACGT 4 cut(s) 168, 1605, 1674, 1762
MaeIII GTNAC 4 cut(s) 32, 236, 1385, 1987
MalI GATC 4 cut(s) 189, 273, 1718, 2070
MboI GATC 4 cut(s) 187, 271, 1716, 2068
MboII GAAGA 7 cut(s) 299, 956, 1045, 1514, 1790, 2014, 2174
MfeI CAATTG 1 cut(s) 113
MflI RGATCY 1 cut(s) 2068
MhlI GDGCHC 6 cut(s) 183, 571, 1189, 1749, 1789, 1921
MlsI TGGCCA 1 cut(s) 762
MluNI TGGCCA 1 cut(s) 762
MlyI GAGTC 1 cut(s) 622
MmeI TCCRAC 2 cut(s) 725, 1069
Mox20I TGGCCA 1 cut(s) 762
Mph1103I ATGCAT 1 cut(s) 1024
MscI TGGCCA 1 cut(s) 762
MseI TTAA 6 cut(s) 615, 984, 1278, 1416, 1434, 1938
MslI CAYNNNNRTG 5 cut(s) 162, 243, 738, 1392, 1661
Msp20I TGGCCA 1 cut(s) 762
MspA1I CMGCKG 1 cut(s) 1687
MspI CCGG 3 cut(s) 562, 1167, 2214
MspR9I CCNGG 5 cut(s) 449, 693, 999, 1894, 2130
MunI CAATTG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 1096
MvaI CCWGG 5 cut(s) 449, 693, 999, 1894, 2130
MwoI GCNNNNNNNGC 8 cut(s) 58, 497, 647, 898, 1047, 1817, 1931, 2188
NcoI CCATGG 2 cut(s) 433, 665
NdeII GATC 4 cut(s) 187, 271, 1716, 2068
NlaIV GGNNCC 3 cut(s) 937, 1103, 2241
NmeAIII GCCGAG 1 cut(s) 2163
NmuCI GTSAC 4 cut(s) 32, 236, 1385, 1987
NsiI ATGCAT 1 cut(s) 1024
NspI RCATGY 5 cut(s) 506, 741, 1026, 1384, 1925
NspV TTCGAA 1 cut(s) 1867
OliI CACNNNNGTG 1 cut(s) 1392
PaeI GCATGC 2 cut(s) 1026, 1384
PagI TCATGA 3 cut(s) 103, 190, 286
PasI CCCWGGG 1 cut(s) 998
PciI ACATGT 1 cut(s) 737
PciSI GCTCTTC 2 cut(s) 312, 1773
PctI GAATGC 1 cut(s) 1096
PfeI GAWTC 8 cut(s) 55, 425, 452, 484, 856, 1531, 1613, 1738
PflMI CCANNNNNTGG 3 cut(s) 169, 301, 328
PfoI TCCNGGA 2 cut(s) 447, 691
PinAI ACCGGT 1 cut(s) 1166
PleI GAGTC 1 cut(s) 622
PpsI GAGTC 1 cut(s) 622
PpuMI RGGWCCY 1 cut(s) 1801
PscI ACATGT 1 cut(s) 737
PshBI ATTAAT 1 cut(s) 1278
Psp5II RGGWCCY 1 cut(s) 1801
Psp6I CCWGG 5 cut(s) 447, 691, 997, 1892, 2128
PspGI CCWGG 5 cut(s) 447, 691, 997, 1892, 2128
PspN4I GGNNCC 3 cut(s) 937, 1103, 2241
PspPI GGNCC 9 cut(s) 70, 154, 364, 490, 717, 1101, 1801, 1890, 2239
PspPPI RGGWCCY 1 cut(s) 1801
PsrI GAACNNNNNNTAC 2 cut(s) 812, 844
PsuI RGATCY 1 cut(s) 2068
PvuII CAGCTG 1 cut(s) 1687
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
RseI CAYNNNNRTG 5 cut(s) 162, 243, 738, 1392, 1661
SapI GCTCTTC 2 cut(s) 312, 1773
SaqAI TTAA 6 cut(s) 615, 984, 1278, 1416, 1434, 1938
Sau3AI GATC 4 cut(s) 187, 271, 1716, 2068
Sau96I GGNCC 9 cut(s) 70, 154, 364, 490, 717, 1101, 1801, 1890, 2239
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 1 cut(s) 622
ScrFI CCNGG 5 cut(s) 449, 693, 999, 1894, 2130
SduI GDGCHC 6 cut(s) 183, 571, 1189, 1749, 1789, 1921
SfaNI GCATC 6 cut(s) 9, 142, 650, 1019, 1079, 1507
SfuI TTCGAA 1 cut(s) 1867
SinI GGWCC 2 cut(s) 717, 1801
SmiMI CAYNNNNRTG 5 cut(s) 162, 243, 738, 1392, 1661
SmlI CTYRAG 3 cut(s) 1271, 1390, 1455
SmoI CTYRAG 3 cut(s) 1271, 1390, 1455
SphI GCATGC 2 cut(s) 1026, 1384
SsiI CCGC 3 cut(s) 1405, 2122, 2237
SspI AATATT 1 cut(s) 971
SspMI CTAG 3 cut(s) 126, 1296, 2248
StyD4I CCNGG 5 cut(s) 447, 691, 997, 1892, 2128
StyI CCWWGG 4 cut(s) 433, 665, 1108, 1295
TaaI ACNGT 6 cut(s) 123, 393, 1468, 1874, 1987, 2168
TaiI ACGT 4 cut(s) 171, 1608, 1677, 1765
TaqI TCGA 3 cut(s) 1711, 1736, 1867
TatI WGTACW 1 cut(s) 64
TauI GCSGC 1 cut(s) 2240
TfiI GAWTC 8 cut(s) 55, 425, 452, 484, 856, 1531, 1613, 1738
Tru1I TTAA 6 cut(s) 615, 984, 1278, 1416, 1434, 1938
Tru9I TTAA 6 cut(s) 615, 984, 1278, 1416, 1434, 1938
TscAI CASTG 7 cut(s) 534, 643, 658, 1366, 1471, 1733, 1756
TseFI GTSAC 4 cut(s) 32, 236, 1385, 1987
Tsp45I GTSAC 4 cut(s) 32, 236, 1385, 1987
TspGWI ACGGA 2 cut(s) 1003, 1003
TspRI CASTG 7 cut(s) 534, 643, 658, 1366, 1471, 1733, 1756
Van91I CCANNNNNTGG 3 cut(s) 169, 301, 328
VneI GTGCAC 2 cut(s) 1785, 1917
VpaK11BI GGWCC 2 cut(s) 717, 1801
VspI ATTAAT 1 cut(s) 1278
XagI CCTNNNNNAGG 1 cut(s) 2048
XapI RAATTY 6 cut(s) 747, 793, 1475, 1488, 1539, 1823
XceI RCATGY 5 cut(s) 506, 741, 1026, 1384, 1925
XcmI CCANNNNNNNNNTGG 1 cut(s) 1551
XmaJI CCTAGG 1 cut(s) 1295
XspI CTAG 3 cut(s) 126, 1296, 2248
ZrmI AGTACT 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.