Rorug02G0614400

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000251
Physical Location & Seq
Reverse (-)
73207974 .. 73215921
7948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0614400.1

Sequence Viewer

Length: 630 bp
ATGTCACTGATTTTGGGTTTGGGTGGTGCAGGCATTGCTGAGATTGATATTGATTTTGGGGCATTTGGATTTTCAATCAGGATGAGAGCAGTATCGAAATTGTATGAGACGATAGAGATGAGAGTGCATATGGACTGCCCCGGATGCGAGAGCAAGGCTAGAAAAGGTCACAGTGACCGGGTGGGCAAGGGCAAGAGGGTTGTCTTTTTGAAGCAGCTTTCTTCTGGCTTGCTTTTGGTCACTGGGCCATTTAAGATTAATGGTGTTCCTCGTAGACAGGTGAACCAATCTTATGTTATTGGAACTTCAACCAAGGTTGACAGCTCTGGTGTTAACGTGGAGAAGTTTGATGACAAGTACTTTGACAAGAAGGGTCAAAAGAAGAAAAAGAAGGGAGAAGGCGAGTTCTTTGAAGTGGAGAAGGAGAATTTGAGGCAGGCATCTCCAGCACTGAAGCAGGGGAAGGCTTTAATTGTGTCTGGATTAGCTGAATGGAAGGAGGATCAGGGTGCTGAATCGCTTGGCAAGCTGGCGGTTGGAATGGATGAGCTCCAACAGATTGTGGAGGACAAAAATAGAGATGGAATTGCTAAGAAACAGAAAGAACTGATACCCTACGTCGGAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

209

Amino Acids

22.92

Weight (kDa)

9.36

Isoelectric Point (pI)

26.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6e PF01159 86 - 144 1.1e-17 Ribosomal protein L6e
CYP38_PsbQ-like PF21329 138 - 208 1.2e-12 Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 274
AciI CCGC 1 cut(s) 533
AclWI GGATC 1 cut(s) 510
AcsI RAATTY 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 473
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 1 cut(s) 620
AgsI TTSAA 4 cut(s) 75, 211, 309, 413
AluBI AGCT 5 cut(s) 217, 324, 488, 529, 550
AluI AGCT 5 cut(s) 217, 324, 488, 529, 550
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 510
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 214
ApoI RAATTY 1 cut(s) 427
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AseI ATTAAT 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 245
AsuC2I CCSGG 2 cut(s) 141, 179
AsuHPI GGTGA 1 cut(s) 292
BanII GRGCYC 1 cut(s) 552
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 1 cut(s) 226
BccI CCATC 1 cut(s) 575
BcnI CCSGG 2 cut(s) 141, 179
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 159
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
BmcAI AGTACT 1 cut(s) 359
Bme1390I CCNGG 2 cut(s) 141, 179
BmgT120I GGNCC 1 cut(s) 245
BmrFI CCNGG 2 cut(s) 141, 179
BmrI ACTGGG 1 cut(s) 252
BmsI GCATC 2 cut(s) 134, 449
BmuI ACTGGG 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 429
BpuMI CCSGG 2 cut(s) 141, 179
BsaJI CCNNGG 2 cut(s) 139, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 620
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 1 cut(s) 33
BseDI CCNNGG 2 cut(s) 139, 312
BseGI GGATG 3 cut(s) 87, 149, 550
BseLI CCNNNNNNNGG 1 cut(s) 620
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 247
BseXI GCAGC 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 48
BshFI GGCC 1 cut(s) 247
BsiHKAI GWGCWC 1 cut(s) 552
BsiSI CCGG 2 cut(s) 141, 178
BslI CCNNNNNNNGG 1 cut(s) 620
BsmAI GTCTC 1 cut(s) 101
BsmBI CGTCTC 1 cut(s) 101
BsnI GGCC 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 552
Bsp143I GATC 1 cut(s) 502
BspACI CCGC 1 cut(s) 533
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 31
BspPI GGATC 1 cut(s) 510
BsrDI GCAATG 1 cut(s) 33
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 139, 312
BssMI GATC 1 cut(s) 502
BssT1I CCWWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 173
BstAPI GCANNNNNTGC 1 cut(s) 35
BstC8I GCNNGC 5 cut(s) 31, 230, 438, 527, 531
BstDEI CTNAG 2 cut(s) 39, 591
BstF5I GGATG 3 cut(s) 87, 149, 550
BstKTI GATC 1 cut(s) 505
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 502
BstMWI GCNNNNNNNGC 4 cut(s) 35, 144, 446, 526
BstSCI CCNGG 2 cut(s) 139, 177
BstV1I GCAGC 1 cut(s) 226
BsuRI GGCC 1 cut(s) 247
BtsCI GGATG 3 cut(s) 87, 149, 550
BtsIMutI CAGTG 4 cut(s) 5, 178, 240, 449
Cac8I GCNNGC 5 cut(s) 31, 230, 438, 527, 531
Cfr13I GGNCC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 358
CviJI RGCY 9 cut(s) 158, 217, 228, 247, 324, 467, 488, 529, 550
CviKI_1 RGCY 9 cut(s) 158, 217, 228, 247, 324, 467, 488, 529, 550
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 2 cut(s) 39, 591
DpnI GATC 1 cut(s) 504
DpnII GATC 1 cut(s) 502
Ecl136II GAGCTC 1 cut(s) 550
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 552
Eco53kI GAGCTC 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 473
EcoICRI GAGCTC 1 cut(s) 550
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 312
Esp3I CGTCTC 1 cut(s) 101
FaiI YATR 4 cut(s) 105, 129, 131, 294
FauNDI CATATG 1 cut(s) 129
FblI GTMKAC 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 215
FokI GGATG 3 cut(s) 94, 156, 557
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 1 cut(s) 159
GluI GCNGC 1 cut(s) 215
GsuI CTGGAG 1 cut(s) 429
HaeIII GGCC 1 cut(s) 247
HapII CCGG 2 cut(s) 141, 178
HincII GTYRAC 2 cut(s) 319, 334
HindII GTYRAC 2 cut(s) 319, 334
HinfI GANTC 1 cut(s) 515
HpaI GTTAAC 1 cut(s) 334
HpaII CCGG 2 cut(s) 141, 178
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 4 cut(s) 275, 283, 319, 334
Hpy188I TCNGA 1 cut(s) 623
Hpy188III TCNNGA 2 cut(s) 79, 480
Hpy8I GTNNAC 4 cut(s) 275, 283, 319, 334
Hpy99I CGWCG 1 cut(s) 623
HpyAV CCTTC 6 cut(s) 364, 385, 392, 415, 457, 490
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4IV ACGT 2 cut(s) 336, 618
HpyCH4V TGCA 2 cut(s) 29, 127
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 144, 446, 526
HpyF3I CTNAG 2 cut(s) 39, 591
HpySE526I ACGT 2 cut(s) 336, 618
KspAI GTTAAC 1 cut(s) 334
Kzo9I GATC 1 cut(s) 502
LmnI GCTCC 1 cut(s) 555
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 2 cut(s) 134, 449
MaeI CTAG 1 cut(s) 159
MaeII ACGT 2 cut(s) 336, 618
MaeIII GTNAC 4 cut(s) 3, 167, 173, 238
MalI GATC 1 cut(s) 504
MboI GATC 1 cut(s) 502
MboII GAAGA 2 cut(s) 213, 394
MhlI GDGCHC 1 cut(s) 552
MluCI AATT 4 cut(s) 98, 427, 471, 585
MmeI TCCRAC 3 cut(s) 517, 577, 601
MnlI CCTC 6 cut(s) 189, 279, 426, 493, 559, 617
MseI TTAA 4 cut(s) 252, 258, 333, 470
MspI CCGG 2 cut(s) 141, 178
MspR9I CCNGG 2 cut(s) 141, 179
MwoI GCNNNNNNNGC 4 cut(s) 35, 144, 446, 526
NciI CCSGG 2 cut(s) 141, 179
NdeI CATATG 1 cut(s) 129
NdeII GATC 1 cut(s) 502
NmuCI GTSAC 4 cut(s) 3, 167, 173, 238
PfeI GAWTC 1 cut(s) 515
PkrI GCNGC 1 cut(s) 216
PshBI ATTAAT 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 552
PspPI GGNCC 1 cut(s) 245
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SacI GAGCTC 1 cut(s) 552
SaqAI TTAA 4 cut(s) 252, 258, 333, 470
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 1 cut(s) 502
Sau96I GGNCC 1 cut(s) 245
ScaI AGTACT 1 cut(s) 359
ScrFI CCNGG 2 cut(s) 141, 179
SduI GDGCHC 1 cut(s) 552
SfaNI GCATC 2 cut(s) 134, 449
Sse9I AATT 4 cut(s) 98, 427, 471, 585
SsiI CCGC 1 cut(s) 533
SspMI CTAG 1 cut(s) 159
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 2 cut(s) 139, 177
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 173
TaiI ACGT 2 cut(s) 339, 621
TaqI TCGA 1 cut(s) 95
TasI AATT 4 cut(s) 98, 427, 471, 585
TatI WGTACW 1 cut(s) 357
TfiI GAWTC 1 cut(s) 515
Tru1I TTAA 4 cut(s) 252, 258, 333, 470
Tru9I TTAA 4 cut(s) 252, 258, 333, 470
TscAI CASTG 4 cut(s) 12, 178, 247, 456
TseFI GTSAC 4 cut(s) 3, 167, 173, 238
TseI GCWGC 1 cut(s) 214
Tsp45I GTSAC 4 cut(s) 3, 167, 173, 238
TspRI CASTG 4 cut(s) 12, 178, 247, 456
VspI ATTAAT 1 cut(s) 258
XapI RAATTY 1 cut(s) 427
XmiI GTMKAC 1 cut(s) 274
XspI CTAG 1 cut(s) 159
ZrmI AGTACT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.