pycom02g16220

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000251
Physical Location & Seq
Reverse (-)
13377945 .. 13378700
756 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g16220.1

Sequence Viewer

Length: 756 bp
ATGTGGTTTCTCTCTGAGCTGCGTGTCCTGCTTGAAAATTATGCAGAGTACATGCCTAGGCTTACCATTTTGTCTGATAGACAGAAGGGTATTGTTGATGGGGTGGAACTAAACTTCCCGACTGCTTTTCATGGGTTTTGTATGCGCTATTTAAGTGACAGTTTACGGAAGGAATTTAATAATCCTCTGCTTGTTAACCTTCTCTGGGAGGCTGCTTATGCTCTTACTGGCATTGGGTTTGAACAAAAACTTATTGAGATTGAAGCTATATCACAGGAAGCAGCCCATTGGATTAAACAAATTTCTCCTCGCCTGTGGGCAACAGCATATTTTGAGGGGACAAGGTTTGGGCAGTTGACTGCTCATATGGTTGAATCTATAAATTCTTGGATAGTAGAAGCATCTGGGCTTCCAATAATTCAGATGATGGAGTGTATCAGACGGCATCTGATGACTTGGTTCAACGAGCGTCGTGAAATGAGCATGCAATGGACGGGCATACTTGTTCCTTCTGCCGAAAAGTGTGTTTTAGATGCAGTTGCGCTTGCTCGTACTTACAATGTGATTCGTGCAAATGAAGCCGAATTTGAAGTTAGAACCTATGAAGGATCAGTCACGGTGGATATTCGTACCCGTTGTTGTTCATGCCGTGGATGGCAGCTATGCAGGCTGCCATGTTCTCATGCTGCAGCAGCCCTCGACCCAAAGGAAACAAAATTAATAATGCCGTGGATGACTTTGAAGAAGTGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

252

Amino Acids

29.08

Weight (kDa)

6.54

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 206 - 233 1.4e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 616
AcsI RAATTY 4 cut(s) 173, 300, 382, 584
AfaI GTAC 3 cut(s) 50, 553, 631
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 7 cut(s) 35, 242, 263, 374, 463, 590, 742
AloI GAACNNNNNNTCC 2 cut(s) 99, 131
AluBI AGCT 3 cut(s) 19, 266, 661
AluI AGCT 3 cut(s) 19, 266, 661
AlwI GGATC 1 cut(s) 616
ApeKI GCWGC 8 cut(s) 19, 212, 281, 658, 670, 686, 689, 692
ApoI RAATTY 4 cut(s) 173, 300, 382, 584
AseI ATTAAT 1 cut(s) 719
AspA2I CCTAGG 1 cut(s) 56
AspLEI GCGC 2 cut(s) 147, 544
AvrII CCTAGG 1 cut(s) 56
BbvI GCAGC 8 cut(s) 6, 199, 293, 657, 670, 673, 701, 704
BccI CCATC 3 cut(s) 92, 421, 648
BceAI ACGGC 3 cut(s) 458, 633, 712
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 687
BisI GCNGC 8 cut(s) 20, 213, 282, 659, 671, 687, 690, 693
BlnI CCTAGG 1 cut(s) 56
BlsI GCNGC 8 cut(s) 21, 214, 283, 660, 672, 688, 691, 694
BmsI GCATC 3 cut(s) 410, 454, 523
BsaJI CCNNGG 3 cut(s) 56, 649, 728
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 494
BseDI CCNNGG 3 cut(s) 56, 649, 728
BseGI GGATG 2 cut(s) 659, 738
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 494
BseMII CTCAG 1 cut(s) 6
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 297
BseXI GCAGC 8 cut(s) 6, 199, 293, 657, 670, 673, 701, 704
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 352
Bsp143I GATC 1 cut(s) 608
BspCNI CTCAG 1 cut(s) 7
BspMAI CTGCAG 1 cut(s) 691
BspPI GGATC 1 cut(s) 616
BsrDI GCAATG 1 cut(s) 494
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 3 cut(s) 56, 649, 728
BssMI GATC 1 cut(s) 608
BssT1I CCWWGG 1 cut(s) 56
Bst4CI ACNGT 2 cut(s) 161, 619
BstC8I GCNNGC 3 cut(s) 485, 546, 668
BstDEI CTNAG 1 cut(s) 15
BstDSI CCRYGG 2 cut(s) 649, 728
BstF5I GGATG 2 cut(s) 659, 738
BstHHI GCGC 2 cut(s) 147, 544
BstKTI GATC 1 cut(s) 611
BstMBI GATC 1 cut(s) 608
BstMWI GCNNNNNNNGC 5 cut(s) 28, 218, 578, 667, 692
BstNSI RCATGY 2 cut(s) 55, 487
BstSFI CTRYAG 1 cut(s) 687
BstV1I GCAGC 8 cut(s) 6, 199, 293, 657, 670, 673, 701, 704
BtgI CCRYGG 2 cut(s) 649, 728
BtsCI GGATG 2 cut(s) 659, 738
Cac8I GCNNGC 3 cut(s) 485, 546, 668
CfoI GCGC 2 cut(s) 147, 544
CseI GACGC 1 cut(s) 458
Csp6I GTAC 3 cut(s) 49, 552, 630
CviAII CATG 6 cut(s) 52, 131, 484, 645, 675, 683
CviQI GTAC 3 cut(s) 49, 552, 630
DdeI CTNAG 1 cut(s) 15
DpnI GATC 1 cut(s) 610
DpnII GATC 1 cut(s) 608
Eco130I CCWWGG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 6 cut(s) 55, 134, 487, 648, 678, 686
FaqI GGGAC 1 cut(s) 352
FatI CATG 6 cut(s) 51, 130, 483, 644, 674, 682
FauNDI CATATG 1 cut(s) 366
Fnu4HI GCNGC 8 cut(s) 20, 213, 282, 659, 671, 687, 690, 693
FokI GGATG 2 cut(s) 666, 745
Fsp4HI GCNGC 8 cut(s) 20, 213, 282, 659, 671, 687, 690, 693
FspBI CTAG 1 cut(s) 57
GlaI GCGC 2 cut(s) 146, 543
GluI GCNGC 8 cut(s) 20, 213, 282, 659, 671, 687, 690, 693
HgaI GACGC 1 cut(s) 458
HhaI GCGC 2 cut(s) 147, 544
Hin1II CATG 6 cut(s) 55, 134, 487, 648, 678, 686
Hin6I GCGC 2 cut(s) 145, 542
HinP1I GCGC 2 cut(s) 145, 542
HincII GTYRAC 2 cut(s) 196, 357
HindII GTYRAC 2 cut(s) 196, 357
HinfI GANTC 2 cut(s) 374, 565
HpaI GTTAAC 1 cut(s) 196
Hpy166II GTNNAC 3 cut(s) 164, 196, 357
Hpy188I TCNGA 5 cut(s) 16, 76, 423, 440, 450
Hpy188III TCNNGA 2 cut(s) 118, 473
Hpy8I GTNNAC 3 cut(s) 164, 196, 357
Hpy99I CGWCG 1 cut(s) 474
HpyAV CCTTC 5 cut(s) 79, 163, 209, 519, 599
HpyCH4III ACNGT 2 cut(s) 161, 619
HpyCH4V TGCA 6 cut(s) 44, 487, 536, 572, 666, 689
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 218, 578, 667, 692
HpyF3I CTNAG 1 cut(s) 15
Hsp92II CATG 6 cut(s) 55, 134, 487, 648, 678, 686
HspAI GCGC 2 cut(s) 145, 542
KspAI GTTAAC 1 cut(s) 196
Kzo9I GATC 1 cut(s) 608
LpnPI CCDG 7 cut(s) 41, 190, 213, 260, 326, 390, 652
Lsp1109I GCAGC 8 cut(s) 6, 199, 293, 657, 670, 673, 701, 704
LweI GCATC 3 cut(s) 410, 454, 523
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 155, 613
MalI GATC 1 cut(s) 610
MboI GATC 1 cut(s) 608
MboII GAAGA 1 cut(s) 754
MluCI AATT 7 cut(s) 37, 173, 300, 382, 417, 584, 716
MnlI CCTC 5 cut(s) 195, 202, 318, 328, 707
MseI TTAA 5 cut(s) 152, 177, 195, 294, 719
MwoI GCNNNNNNNGC 5 cut(s) 28, 218, 578, 667, 692
NdeI CATATG 1 cut(s) 366
NdeII GATC 1 cut(s) 608
NlaIII CATG 6 cut(s) 55, 134, 487, 648, 678, 686
NmuCI GTSAC 2 cut(s) 155, 613
NspI RCATGY 2 cut(s) 55, 487
PaeI GCATGC 1 cut(s) 487
PfeI GAWTC 2 cut(s) 374, 565
PkrI GCNGC 8 cut(s) 21, 214, 283, 660, 672, 688, 691, 694
PshBI ATTAAT 1 cut(s) 719
PstI CTGCAG 1 cut(s) 691
RsaI GTAC 3 cut(s) 50, 553, 631
RsaNI GTAC 3 cut(s) 49, 552, 630
SaqAI TTAA 5 cut(s) 152, 177, 195, 294, 719
SatI GCNGC 8 cut(s) 20, 213, 282, 659, 671, 687, 690, 693
Sau3AI GATC 1 cut(s) 608
SetI ASST 6 cut(s) 21, 201, 268, 347, 602, 663
SfaNI GCATC 3 cut(s) 410, 454, 523
SfcI CTRYAG 1 cut(s) 687
SphI GCATGC 1 cut(s) 487
Sse9I AATT 7 cut(s) 37, 173, 300, 382, 417, 584, 716
SspMI CTAG 1 cut(s) 57
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 2 cut(s) 161, 619
TaqI TCGA 1 cut(s) 699
TasI AATT 7 cut(s) 37, 173, 300, 382, 417, 584, 716
TatI WGTACW 1 cut(s) 48
TfiI GAWTC 2 cut(s) 374, 565
Tru1I TTAA 5 cut(s) 152, 177, 195, 294, 719
Tru9I TTAA 5 cut(s) 152, 177, 195, 294, 719
TseFI GTSAC 2 cut(s) 155, 613
TseI GCWGC 8 cut(s) 19, 212, 281, 658, 670, 686, 689, 692
Tsp45I GTSAC 2 cut(s) 155, 613
TspDTI ATGAA 4 cut(s) 119, 591, 618, 633
TspGWI ACGGA 1 cut(s) 181
VspI ATTAAT 1 cut(s) 719
XapI RAATTY 4 cut(s) 173, 300, 382, 584
XceI RCATGY 2 cut(s) 55, 487
XmaJI CCTAGG 1 cut(s) 56
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.