Rh7CG003000

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000251
Physical Location & Seq
Reverse (-)
287410 .. 287726
317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG003000.1

Sequence Viewer

Length: 228 bp
ATGGCTGAAATAGAGGAGGTTTCTTTAGATGCTGCAAAATGGCTGCAACAATTTCATCCTTCCCGCTGGGCATTTGTGTATTTTGAAGGAACACATTATGGTCATTTCTCATCAAATATTGAGGAGTTCAATAAATGGATTCTGGAAGCTCGTGAATTGCCCATAATCCAGGTGATTGAAAGGATTCATGGTAAATTGATGACGGAGTTTGAAGAACGGCGTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

75

Amino Acids

9.06

Weight (kDa)

5.27

Isoelectric Point (pI)

89.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 64
AcyI GRCGYC 1 cut(s) 220
AgsI TTSAA 4 cut(s) 86, 130, 179, 212
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
ApeKI GCWGC 2 cut(s) 32, 43
Asp700I GAANNNNTTC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 184
BauI CACGAG 1 cut(s) 150
BbvI GCAGC 2 cut(s) 19, 30
BciT130I CCWGG 1 cut(s) 170
BisI GCNGC 2 cut(s) 33, 44
BlsI GCNGC 2 cut(s) 34, 45
Bme1390I CCNGG 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 220
BseBI CCWGG 1 cut(s) 170
BseGI GGATG 1 cut(s) 55
BseRI GAGGAG 2 cut(s) 29, 137
BseXI GCAGC 2 cut(s) 19, 30
BseYI CCCAGC 1 cut(s) 66
BspACI CCGC 1 cut(s) 64
BssNI GRCGYC 1 cut(s) 220
BssSI CACGAG 1 cut(s) 150
Bst2BI CACGAG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 170
BstACI GRCGYC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 55
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 19, 30
BtsCI GGATG 1 cut(s) 55
CseI GACGC 1 cut(s) 209
CviAII CATG 1 cut(s) 188
CviJI RGCY 3 cut(s) 5, 43, 149
CviKI_1 RGCY 3 cut(s) 5, 43, 149
DdeI CTNAG 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 168
FaeI CATG 1 cut(s) 191
FaiI YATR 3 cut(s) 99, 164, 189
FatI CATG 1 cut(s) 187
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 2 cut(s) 33, 44
FokI GGATG 1 cut(s) 42
Fsp4HI GCNGC 2 cut(s) 33, 44
GluI GCNGC 2 cut(s) 33, 44
GsaI CCCAGC 1 cut(s) 70
HgaI GACGC 1 cut(s) 209
Hin1I GRCGYC 1 cut(s) 220
Hin1II CATG 1 cut(s) 191
HinfI GANTC 2 cut(s) 139, 184
HphI GGTGA 1 cut(s) 184
Hpy188III TCNNGA 2 cut(s) 143, 152
HpyAV CCTTC 2 cut(s) 69, 80
HpyCH4V TGCA 2 cut(s) 35, 46
HpyF3I CTNAG 1 cut(s) 225
Hsp92I GRCGYC 1 cut(s) 220
Hsp92II CATG 1 cut(s) 191
LpnPI CCDG 4 cut(s) 52, 128, 155, 182
Lsp1109I GCAGC 2 cut(s) 19, 30
LweI GCATC 1 cut(s) 19
MboII GAAGA 1 cut(s) 224
MluCI AATT 3 cut(s) 50, 155, 194
MnlI CCTC 3 cut(s) 7, 10, 115
MroXI GAANNNNTTC 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
NlaIII CATG 1 cut(s) 191
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 2 cut(s) 139, 184
PkrI GCNGC 2 cut(s) 34, 45
Psp6I CCWGG 1 cut(s) 168
PspFI CCCAGC 1 cut(s) 66
PspGI CCWGG 1 cut(s) 168
SatI GCNGC 2 cut(s) 33, 44
ScrFI CCNGG 1 cut(s) 170
SetI ASST 3 cut(s) 21, 151, 174
SfaNI GCATC 1 cut(s) 19
SgeI CNNG 8 cut(s) 75, 79, 155, 162, 164, 181, 182, 200
Sse9I AATT 3 cut(s) 50, 155, 194
SsiI CCGC 1 cut(s) 64
SspI AATATT 1 cut(s) 118
StyD4I CCNGG 1 cut(s) 168
TasI AATT 3 cut(s) 50, 155, 194
TfiI GAWTC 2 cut(s) 139, 184
TseI GCWGC 2 cut(s) 32, 43
TspDTI ATGAA 2 cut(s) 44, 176
TspGWI ACGGA 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.