FvH4_1g24112

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000976
Physical Location & Seq
Forward (+)
15983899 .. 15984538
640 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24112.t1

Sequence Viewer

Length: 474 bp
ATGGAAGATGGAGAAAGCTCCTCAAGACATCTACAGACTATCATTATCAAAATTGGTAGAGATATAAAACTTCCTGAAAGAAAAGGGCCTACGGGAAAGAAAGATGACATAAACTCTCAAAGATTTGTCCCAGAACTAAGCATACCAAAAATGCCAATATCACAACATAGTAATTATTGGTTAGATCTGGGTAAGGCTCTAGACAAGAAGAAAGCCATAGATGACTGGGTCAATGCTATGTTTATGGCAGCTTGCACAACATATGGGAAGTTTGAGGCACAAGACCTAAAAACAGTCTATCAAGCTACTCTTATAGGAATGGCAAAGAAATTTTATCTTGCTTCGAAAGAAACCCAAAGGGGTACAACATGGCTAGAAAACATAAAAGATGATAAATCTCCAACAACCTTTGCTACACCAATCTATGAGCAATTTTGTGGAGATATATCATTTAGCCGTGGAGGACGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.8

Weight (kDa)

9.0

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 329
AfaI GTAC 1 cut(s) 364
AluBI AGCT 3 cut(s) 18, 251, 305
AluI AGCT 3 cut(s) 18, 251, 305
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 86
AsuII TTCGAA 1 cut(s) 344
BbvI GCAGC 1 cut(s) 260
BccI CCATC 1 cut(s) 2
BceAI ACGGC 1 cut(s) 441
BfaI CTAG 2 cut(s) 200, 374
BfmI CTRYAG 1 cut(s) 32
BglII AGATCT 1 cut(s) 184
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 86
BmrI ACTGGG 1 cut(s) 235
BmuI ACTGGG 1 cut(s) 235
Bpu14I TTCGAA 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 457
Bse1I ACTGG 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 457
BseNI ACTGG 1 cut(s) 230
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 1 cut(s) 260
BshFI GGCC 1 cut(s) 88
BslFI GGGAC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 1 cut(s) 88
Bsp119I TTCGAA 1 cut(s) 344
Bsp143I GATC 1 cut(s) 184
BspANI GGCC 1 cut(s) 88
BspT104I TTCGAA 1 cut(s) 344
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 295
BstBI TTCGAA 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 1 cut(s) 137
BstDSI CCRYGG 1 cut(s) 457
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 260
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BsuRI GGCC 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 457
Cac8I GCNNGC 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 363
CviAII CATG 1 cut(s) 369
CviJI RGCY 9 cut(s) 18, 88, 197, 215, 251, 305, 373, 456, 469
CviKI_1 RGCY 9 cut(s) 18, 88, 197, 215, 251, 305, 373, 456, 469
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 1 cut(s) 137
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 86
FaeI CATG 1 cut(s) 372
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FaqI GGGAC 1 cut(s) 113
FatI CATG 1 cut(s) 368
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 2 cut(s) 200, 374
GluI GCNGC 1 cut(s) 249
HaeIII GGCC 1 cut(s) 88
Hin1II CATG 1 cut(s) 372
Hpy188III TCNNGA 3 cut(s) 24, 74, 200
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4V TGCA 1 cut(s) 255
HpyF3I CTNAG 1 cut(s) 137
Hsp92II CATG 1 cut(s) 372
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 4 cut(s) 87, 144, 173, 211
Lsp1109I GCAGC 1 cut(s) 260
MaeI CTAG 2 cut(s) 200, 374
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 2 cut(s) 17, 220
MflI RGATCY 1 cut(s) 184
MluCI AATT 4 cut(s) 51, 172, 329, 431
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 3 cut(s) 31, 268, 455
NdeI CATATG 1 cut(s) 262
NdeII GATC 1 cut(s) 184
NlaIII CATG 1 cut(s) 372
NspV TTCGAA 1 cut(s) 344
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 1 cut(s) 250
PspPI GGNCC 1 cut(s) 86
PsrI GAACNNNNNNTAC 2 cut(s) 126, 158
PsuI RGATCY 1 cut(s) 184
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 86
SetI ASST 5 cut(s) 20, 253, 288, 307, 410
SfcI CTRYAG 1 cut(s) 32
SfuI TTCGAA 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 4 cut(s) 51, 172, 329, 431
SspMI CTAG 2 cut(s) 200, 374
TaaI ACNGT 1 cut(s) 295
TaqI TCGA 1 cut(s) 344
TasI AATT 4 cut(s) 51, 172, 329, 431
TseI GCWGC 1 cut(s) 248
Tth111I GACNNNGTC 1 cut(s) 227
XapI RAATTY 1 cut(s) 329
XbaI TCTAGA 1 cut(s) 199
XspI CTAG 2 cut(s) 200, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.