Rmu_sc0004094.1_g000040

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004094.1
OG0000976
Physical Location & Seq
Reverse (-)
194850 .. 195536
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004094.1_g000040.1.cds

Sequence Viewer

Length: 687 bp
atgtgcaatcaagtggcatatttcaattgcttcccaaacttctcaaccagcttgaaggatgcagcccactgtctccgactgagagtcaagacagatgacatatctatgaaaaatgatatgcaagaattggcgatagtatacagaatatactataaactgatgagcaccacagtagagccaaagacacggatctccaacatccctggtcttactactggatttctcaccagtcagaagaaccattcacaacagattcacaaggttacttggaatgaagtaacttttcctattgaatggaaattatctggtccgaagctaccagcagagaatgcaaaagctaaaatttatgaaagtagaaagactggagaaatcagtctaaattttgataatcaccgaaaaagtgatgtcgatcctgagaatctcaggataaacaggaatcttctcagaagaagctacagcactagagaagctagtgtcagtggtacaaaacccactattgaagatcctattactgaagaagaactggaagctgatctaaacaaaccagcccagatgttcagagctgagaggctctataagctttatgaagaagctgagaattgcgaaagtcctgaacgattagaaaaactaattgaagaaatgaaaaatttcaatccaggaaaggaaagaaaactccttccctactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

228

Amino Acids

26.54

Weight (kDa)

8.24

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 138
AclWI GGATC 3 cut(s) 197, 404, 497
AcsI RAATTY 3 cut(s) 342, 379, 646
AcuI CTGAAG 1 cut(s) 534
AfaI GTAC 1 cut(s) 484
AgsI TTSAA 6 cut(s) 25, 55, 293, 500, 635, 652
AhdI GACNNNNNGTC 1 cut(s) 83
AjnI CCWGG 2 cut(s) 202, 655
AluBI AGCT 9 cut(s) 51, 316, 338, 453, 470, 530, 563, 580, 593
AluI AGCT 9 cut(s) 51, 316, 338, 453, 470, 530, 563, 580, 593
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 3 cut(s) 197, 404, 497
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 3 cut(s) 342, 379, 646
Asp700I GAANNNNTTC 1 cut(s) 647
AspS9I GGNCC 1 cut(s) 308
AsuHPI GGTGA 2 cut(s) 217, 383
AvaII GGWCC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 74
BciT130I CCWGG 2 cut(s) 204, 657
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 2 cut(s) 462, 471
BfmI CTRYAG 1 cut(s) 454
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 2 cut(s) 204, 657
Bme18I GGWCC 1 cut(s) 308
BmeRI GACNNNNNGTC 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 308
BmrFI CCNGG 2 cut(s) 204, 657
BmsI GCATC 1 cut(s) 49
BpmI CTGGAG 1 cut(s) 384
BsaBI GATNNNNATC 1 cut(s) 408
BsaJI CCNNGG 1 cut(s) 202
Bse1I ACTGG 4 cut(s) 220, 228, 367, 528
Bse8I GATNNNNATC 1 cut(s) 408
BseBI CCWGG 2 cut(s) 204, 657
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 2 cut(s) 64, 198
BseJI GATNNNNATC 1 cut(s) 408
BseMII CTCAG 6 cut(s) 71, 405, 436, 457, 555, 585
BseNI ACTGG 4 cut(s) 220, 228, 367, 528
BseXI GCAGC 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 334
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 4 cut(s) 189, 409, 502, 532
BspCNI CTCAG 6 cut(s) 72, 406, 435, 456, 556, 586
BspPI GGATC 3 cut(s) 197, 404, 497
BsrI ACTGG 4 cut(s) 220, 228, 367, 528
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 4 cut(s) 189, 409, 502, 532
BssNAI GTATAC 1 cut(s) 139
Bst1107I GTATAC 1 cut(s) 139
Bst2UI CCWGG 2 cut(s) 204, 657
Bst4CI ACNGT 2 cut(s) 71, 172
BstAPI GCANNNNNTGC 1 cut(s) 329
BstDEI CTNAG 6 cut(s) 80, 414, 422, 443, 564, 594
BstF5I GGATG 2 cut(s) 64, 198
BstKTI GATC 4 cut(s) 192, 412, 505, 535
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 4 cut(s) 189, 409, 502, 532
BstMWI GCNNNNNNNGC 2 cut(s) 329, 577
BstNI CCWGG 2 cut(s) 204, 657
BstSCI CCNGG 2 cut(s) 202, 655
BstSFI CTRYAG 1 cut(s) 454
BstV1I GCAGC 1 cut(s) 74
BstX2I RGATCY 2 cut(s) 189, 502
BstYI RGATCY 2 cut(s) 189, 502
BstZ17I GTATAC 1 cut(s) 139
BtsCI GGATG 2 cut(s) 64, 198
BtsIMutI CAGTG 2 cut(s) 67, 484
Cfr13I GGNCC 1 cut(s) 308
Csp6I GTAC 1 cut(s) 483
CviQI GTAC 1 cut(s) 483
DdeI CTNAG 6 cut(s) 80, 414, 422, 443, 564, 594
DpnI GATC 4 cut(s) 191, 411, 504, 534
DpnII GATC 4 cut(s) 189, 409, 502, 532
DriI GACNNNNNGTC 1 cut(s) 83
Eam1105I GACNNNNNGTC 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 534
EcoRII CCWGG 2 cut(s) 202, 655
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 2 cut(s) 71, 185
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 2 cut(s) 462, 471
GluI GCNGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 384
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 4 cut(s) 84, 253, 418, 436
HphI GGTGA 2 cut(s) 217, 383
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 5 cut(s) 77, 234, 312, 446, 560
Hpy188III TCNNGA 4 cut(s) 88, 413, 424, 611
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 49, 686
HpyCH4III ACNGT 2 cut(s) 71, 172
HpyCH4V TGCA 4 cut(s) 6, 62, 121, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 577
HpyF3I CTNAG 6 cut(s) 80, 414, 422, 443, 564, 594
Kzo9I GATC 4 cut(s) 189, 409, 502, 532
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 1 cut(s) 49
MaeI CTAG 2 cut(s) 462, 471
MaeIII GTNAC 2 cut(s) 262, 277
MalI GATC 4 cut(s) 191, 411, 504, 534
MboI GATC 4 cut(s) 189, 409, 502, 532
MboII GAAGA 8 cut(s) 247, 431, 459, 512, 527, 530, 599, 647
MfeI CAATTG 1 cut(s) 25
MflI RGATCY 2 cut(s) 189, 502
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 8 cut(s) 25, 125, 299, 342, 379, 598, 630, 646
MlyI GAGTC 1 cut(s) 93
MmeI TCCRAC 2 cut(s) 100, 219
MnlI CCTC 1 cut(s) 561
MroXI GAANNNNTTC 1 cut(s) 647
MslI CAYNNNNRTG 1 cut(s) 104
MspR9I CCNGG 2 cut(s) 204, 657
MunI CAATTG 1 cut(s) 25
Mva1269I GAATGC 1 cut(s) 334
MvaI CCWGG 2 cut(s) 204, 657
MwoI GCNNNNNNNGC 2 cut(s) 329, 577
NdeII GATC 4 cut(s) 189, 409, 502, 532
PctI GAATGC 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 647
PfeI GAWTC 3 cut(s) 253, 418, 436
PfoI TCCNGGA 1 cut(s) 655
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 202, 655
PspGI CCWGG 2 cut(s) 202, 655
PspPI GGNCC 1 cut(s) 308
PsuI RGATCY 2 cut(s) 189, 502
RsaI GTAC 1 cut(s) 484
RsaNI GTAC 1 cut(s) 483
RseI CAYNNNNRTG 1 cut(s) 104
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 4 cut(s) 189, 409, 502, 532
Sau96I GGNCC 1 cut(s) 308
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 2 cut(s) 204, 657
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 1 cut(s) 454
SinI GGWCC 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 8 cut(s) 25, 125, 299, 342, 379, 598, 630, 646
SspMI CTAG 2 cut(s) 462, 471
StyD4I CCNGG 2 cut(s) 202, 655
TaaI ACNGT 2 cut(s) 71, 172
TaqI TCGA 1 cut(s) 408
TasI AATT 8 cut(s) 25, 125, 299, 342, 379, 598, 630, 646
TfiI GAWTC 3 cut(s) 253, 418, 436
TscAI CASTG 2 cut(s) 74, 484
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 5 cut(s) 122, 288, 363, 600, 656
TspGWI ACGGA 1 cut(s) 202
TspRI CASTG 2 cut(s) 74, 484
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 3 cut(s) 342, 379, 646
XmiI GTMKAC 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 647
XspI CTAG 2 cut(s) 462, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.