Rmu_sc0003415.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003415.1
OG0000976
Physical Location & Seq
Forward (+)
65442 .. 66203
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003415.1_g000012.1.cds

Sequence Viewer

Length: 762 bp
atggaaattatccagtccaaaaaagctaccggaaagagcaaagcaaaaatctatgaaagtagaaagactggagaaatcagtctcaattttgacaatcacagaaaaagtgatgtctgtcctgataacctcaggataaacaaaaatcttctcagaagaagctacagcactagagaagccagtgttagtggtacaaaacccactatagaagagccaatattatctgaagaagaattagaagctgatctgaatagatcagtaaacatgcttagagcacaaaagctctatgatctttatgaagaagttgagaattgcgaaaatcctgaacgattagaaaaactaatcaaagaaatgaaagaattcaaaatcagaaagacgagaaaagtctttccatatcaagatattgaaatggaagatggagaaagctccagaactttcattagcagagaaaaagggaaaatgaaactcccacttcagaaagcccctacgggtaaaaaaggggaaagaaattcccaaagatttgtcccagaggacaatatgcccagagttcctatcacgaactatgacatctggttaaatctagacaagagtctagacaaaagaaaaaccattgaccaatgggtagatagcatgataatggcttctgtacttacccttggaaaatttgaagcaccagatttgcaggtgtactatgaaactactcttactggagtagcaaaaaagtattatctgtctttcaaagaaactgccagaggaagagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

29.52

Weight (kDa)

9.05

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 670
Acc36I ACCTGC 1 cut(s) 670
AcsI RAATTY 3 cut(s) 356, 505, 659
AcuI CTGAAG 2 cut(s) 243, 455
AfaI GTAC 3 cut(s) 190, 645, 686
AgsI TTSAA 4 cut(s) 361, 404, 665, 736
AluBI AGCT 5 cut(s) 26, 159, 239, 280, 423
AluI AGCT 5 cut(s) 26, 159, 239, 280, 423
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 2 cut(s) 86, 750
ApoI RAATTY 3 cut(s) 356, 505, 659
Asp700I GAANNNNTTC 1 cut(s) 356
AxyI CCTNAGG 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 274
BccI CCATC 1 cut(s) 407
BcoDI GTCTC 2 cut(s) 86, 750
BfaI CTAG 4 cut(s) 168, 578, 590, 760
BfmI CTRYAG 2 cut(s) 160, 201
BfuAI ACCTGC 1 cut(s) 670
BoxI GACNNNNGTC 1 cut(s) 585
BpmI CTGGAG 3 cut(s) 90, 409, 726
BsaJI CCNNGG 1 cut(s) 652
BsaWI WCCGGW 1 cut(s) 29
Bse1I ACTGG 4 cut(s) 13, 73, 177, 709
Bse21I CCTNAGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 652
BseMII CTCAG 2 cut(s) 142, 163
BseNI ACTGG 4 cut(s) 13, 73, 177, 709
BsiHKAI GWGCWC 1 cut(s) 274
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 506
BsmAI GTCTC 2 cut(s) 86, 750
BsmFI GGGAC 1 cut(s) 506
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 3 cut(s) 241, 251, 286
BspCNI CTCAG 2 cut(s) 141, 162
BspMI ACCTGC 1 cut(s) 670
BspQI GCTCTTC 1 cut(s) 201
BsrI ACTGG 4 cut(s) 13, 73, 177, 709
BssECI CCNNGG 1 cut(s) 652
BssMI GATC 3 cut(s) 241, 251, 286
BssT1I CCWWGG 1 cut(s) 652
Bst6I CTCTTC 2 cut(s) 201, 748
BstDEI CTNAG 3 cut(s) 128, 149, 266
BstKTI GATC 3 cut(s) 244, 254, 289
BstMAI GTCTC 2 cut(s) 86, 750
BstMBI GATC 3 cut(s) 241, 251, 286
BstNSI RCATGY 1 cut(s) 265
BstPAI GACNNNNGTC 1 cut(s) 585
BstSFI CTRYAG 2 cut(s) 160, 201
Bsu36I CCTNAGG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 184
BveI ACCTGC 1 cut(s) 670
Csp6I GTAC 3 cut(s) 189, 644, 685
CviAII CATG 2 cut(s) 262, 628
CviJI RGCY 9 cut(s) 26, 159, 176, 211, 239, 280, 423, 479, 638
CviKI_1 RGCY 9 cut(s) 26, 159, 176, 211, 239, 280, 423, 479, 638
CviQI GTAC 3 cut(s) 189, 644, 685
DdeI CTNAG 3 cut(s) 128, 149, 266
DpnI GATC 3 cut(s) 243, 253, 288
DpnII GATC 3 cut(s) 241, 251, 286
Eam1104I CTCTTC 2 cut(s) 201, 748
EarI CTCTTC 2 cut(s) 201, 748
Eco130I CCWWGG 1 cut(s) 652
Eco57I CTGAAG 2 cut(s) 243, 455
Eco81I CCTNAGG 1 cut(s) 128
EcoRI GAATTC 1 cut(s) 356
EcoT14I CCWWGG 1 cut(s) 652
ErhI CCWWGG 1 cut(s) 652
FaeI CATG 2 cut(s) 265, 631
FaqI GGGAC 1 cut(s) 506
FatI CATG 2 cut(s) 261, 627
FspBI CTAG 4 cut(s) 168, 578, 590, 760
GsuI CTGGAG 3 cut(s) 90, 409, 726
HapII CCGG 1 cut(s) 30
Hin1II CATG 2 cut(s) 265, 631
HinfI GANTC 1 cut(s) 586
HpaII CCGG 1 cut(s) 30
Hpy166II GTNNAC 2 cut(s) 259, 685
Hpy188I TCNGA 5 cut(s) 152, 223, 246, 368, 474
Hpy188III TCNNGA 8 cut(s) 119, 130, 320, 395, 426, 553, 578, 590
Hpy8I GTNNAC 2 cut(s) 259, 685
HpyCH4V TGCA 1 cut(s) 679
HpyF3I CTNAG 3 cut(s) 128, 149, 266
Hsp92II CATG 2 cut(s) 265, 631
Kzo9I GATC 3 cut(s) 241, 251, 286
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 1 cut(s) 428
MaeI CTAG 4 cut(s) 168, 578, 590, 760
MalI GATC 3 cut(s) 243, 253, 288
MboI GATC 3 cut(s) 241, 251, 286
MboII GAAGA 7 cut(s) 137, 165, 218, 236, 239, 308, 422
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 7 cut(s) 6, 85, 230, 307, 356, 505, 659
MlyI GAGTC 1 cut(s) 595
MnlI CCTC 3 cut(s) 137, 520, 743
MroXI GAANNNNTTC 1 cut(s) 356
MseI TTAA 1 cut(s) 572
MslI CAYNNNNRTG 1 cut(s) 632
MspI CCGG 1 cut(s) 30
NdeII GATC 3 cut(s) 241, 251, 286
NlaIII CATG 2 cut(s) 265, 631
NspI RCATGY 1 cut(s) 265
PaqCI CACCTGC 1 cut(s) 670
PciSI GCTCTTC 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 356
PleI GAGTC 1 cut(s) 594
PpsI GAGTC 1 cut(s) 594
PshAI GACNNNNGTC 1 cut(s) 585
RsaI GTAC 3 cut(s) 190, 645, 686
RsaNI GTAC 3 cut(s) 189, 644, 685
RseI CAYNNNNRTG 1 cut(s) 632
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 572
Sau3AI GATC 3 cut(s) 241, 251, 286
SchI GAGTC 1 cut(s) 595
SduI GDGCHC 1 cut(s) 274
SetI ASST 7 cut(s) 28, 129, 161, 241, 282, 425, 684
SfcI CTRYAG 2 cut(s) 160, 201
SmiMI CAYNNNNRTG 1 cut(s) 632
Sse9I AATT 7 cut(s) 6, 85, 230, 307, 356, 505, 659
SspI AATATT 1 cut(s) 216
SspMI CTAG 4 cut(s) 168, 578, 590, 760
StyI CCWWGG 1 cut(s) 652
TasI AATT 7 cut(s) 6, 85, 230, 307, 356, 505, 659
TatI WGTACW 2 cut(s) 643, 684
Tru1I TTAA 1 cut(s) 572
Tru9I TTAA 1 cut(s) 572
TscAI CASTG 1 cut(s) 184
TspDTI ATGAA 6 cut(s) 69, 309, 365, 424, 473, 705
TspRI CASTG 1 cut(s) 184
XapI RAATTY 3 cut(s) 356, 505, 659
XbaI TCTAGA 2 cut(s) 577, 589
XceI RCATGY 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 356
XspI CTAG 4 cut(s) 168, 578, 590, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.