RchiOBHm_Chr6g0277631

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000976
Physical Location & Seq
Forward (+)
40147637 .. 40148144
508 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24906

Sequence Viewer

Length: 363 bp
ATGAGATATTTCGAAGAATACCTGAATGAGTTTCAGGAATATTACTGTACAATTGGTGAACTAGAGAATACTGATCTAGTTAATCTGTTGCACAGGAAACTCCCTGAACCATGGAGAACAGCTGTGAGAGAAAGCATAGCTGAAAAACCAATTGAAAGATTTTCAGTTGGAGGAATTGCCGACAGAATCCGGCAATTACTGAAGGAGCAATGCAAAGCCAATCTTAGAGCTAAGATGGCCAAGAAACAACTCAAAGGAGTTGAAAATTTCTGTTATGGAATACTAGATATGCCCACAAACTGGGGATGTCATGAATCCAAATTCCACAGAAAGAAAAAATTAAAAAGAAAAATATTACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

14.33

Weight (kDa)

9.43

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Caulimovir_coat_dom PF22909 1 - 93 2.5e-07 Caulimovirus coat protein, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 300
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 2 cut(s) 265, 320
AcuI CTGAAG 1 cut(s) 221
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 300
AgsI TTSAA 2 cut(s) 155, 263
AluBI AGCT 3 cut(s) 122, 140, 230
AluI AGCT 3 cut(s) 122, 140, 230
AoxI GGCC 1 cut(s) 237
ApoI RAATTY 2 cut(s) 265, 320
AsuHPI GGTGA 1 cut(s) 68
AsuII TTCGAA 1 cut(s) 12
BalI TGGCCA 1 cut(s) 239
BccI CCATC 1 cut(s) 229
BfaI CTAG 3 cut(s) 62, 77, 284
BmrI ACTGGG 1 cut(s) 310
BmuI ACTGGG 1 cut(s) 310
Bpu14I TTCGAA 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 110
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse1I ACTGG 1 cut(s) 305
Bse3DI GCAATG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 110
BseGI GGATG 1 cut(s) 311
BseLI CCNNNNNNNGG 1 cut(s) 300
BseMI GCAATG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 305
BshFI GGCC 1 cut(s) 239
BsiSI CCGG 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 300
BsnI GGCC 1 cut(s) 239
Bsp119I TTCGAA 1 cut(s) 12
Bsp1407I TGTACA 1 cut(s) 47
Bsp143I GATC 1 cut(s) 73
Bsp19I CCATGG 1 cut(s) 110
BspANI GGCC 1 cut(s) 239
BspHI TCATGA 1 cut(s) 310
BspT104I TTCGAA 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 215
BsrGI TGTACA 1 cut(s) 47
BsrI ACTGG 1 cut(s) 305
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 47
BstAUI TGTACA 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 224, 231
BstDSI CCRYGG 1 cut(s) 110
BstF5I GGATG 1 cut(s) 311
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 236
BsuRI GGCC 1 cut(s) 239
BtgI CCRYGG 1 cut(s) 110
BtsCI GGATG 1 cut(s) 311
CciI TCATGA 1 cut(s) 310
Csp6I GTAC 1 cut(s) 48
CviAII CATG 2 cut(s) 111, 311
CviJI RGCY 5 cut(s) 122, 140, 218, 230, 239
CviKI_1 RGCY 5 cut(s) 122, 140, 218, 230, 239
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 2 cut(s) 224, 231
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 2 cut(s) 114, 314
FaiI YATR 5 cut(s) 112, 137, 276, 290, 312
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 2 cut(s) 110, 310
FokI GGATG 1 cut(s) 318
FspBI CTAG 3 cut(s) 62, 77, 284
HaeIII GGCC 1 cut(s) 239
HapII CCGG 1 cut(s) 190
Hin1II CATG 2 cut(s) 114, 314
HinfI GANTC 2 cut(s) 186, 314
HpaII CCGG 1 cut(s) 190
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 59
Hpy188III TCNNGA 2 cut(s) 35, 311
Hpy8I GTNNAC 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4V TGCA 2 cut(s) 91, 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 224, 231
Hsp92II CATG 2 cut(s) 114, 314
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 6 cut(s) 20, 35, 79, 117, 203, 286
MaeI CTAG 3 cut(s) 62, 77, 284
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 1 cut(s) 26
MfeI CAATTG 2 cut(s) 51, 150
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 7 cut(s) 51, 150, 174, 194, 265, 320, 338
MluNI TGGCCA 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 1 cut(s) 164
Mox20I TGGCCA 1 cut(s) 239
MscI TGGCCA 1 cut(s) 239
MseI TTAA 2 cut(s) 81, 341
Msp20I TGGCCA 1 cut(s) 239
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 1 cut(s) 190
MunI CAATTG 2 cut(s) 51, 150
MwoI GCNNNNNNNGC 1 cut(s) 236
NcoI CCATGG 1 cut(s) 110
NdeII GATC 1 cut(s) 73
NlaIII CATG 2 cut(s) 114, 314
NspV TTCGAA 1 cut(s) 12
PagI TCATGA 1 cut(s) 310
PfeI GAWTC 2 cut(s) 186, 314
PflMI CCANNNNNTGG 1 cut(s) 300
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
SaqAI TTAA 2 cut(s) 81, 341
Sau3AI GATC 1 cut(s) 73
SetI ASST 4 cut(s) 24, 124, 142, 232
SfuI TTCGAA 1 cut(s) 12
Sse9I AATT 7 cut(s) 51, 150, 174, 194, 265, 320, 338
SspI AATATT 2 cut(s) 41, 354
SspMI CTAG 3 cut(s) 62, 77, 284
StyI CCWWGG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 47
TaqI TCGA 1 cut(s) 12
TasI AATT 7 cut(s) 51, 150, 174, 194, 265, 320, 338
TatI WGTACW 1 cut(s) 47
TfiI GAWTC 2 cut(s) 186, 314
Tru1I TTAA 2 cut(s) 81, 341
Tru9I TTAA 2 cut(s) 81, 341
TspDTI ATGAA 1 cut(s) 327
Van91I CCANNNNNTGG 1 cut(s) 300
XapI RAATTY 2 cut(s) 265, 320
XspI CTAG 3 cut(s) 62, 77, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.