Rmu_sc0007369.1_g000004

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007369.1
OG0000976
Physical Location & Seq
Reverse (-)
11925 .. 14418
2494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007369.1_g000004.1.cds

Sequence Viewer

Length: 1353 bp
atgaaaaatatactgaaggacaagaaagtgcctacagtaaaaaagaaagctaatggattcaaaccattagaaaggccagacaagaatcctgttccaaacatgatttttctggatccttcaactagttctactagtatccggtatgaaaacccggaaaaaagagaaatgaagatgttaagcatctttgggaaaaagaaaggagtacaactcctaaatgctgaagaatttgagttcaatgagattgaacaagaagtaaaaaattcctcaattccaaagttagatttcaaacagatctacaaaagaggaaaatttgatttactggatagccattatttcaaattactggagaaccccagcaacggcaggttaacagacttccaagctagtctgttgggaacacttgaagcatccttatgcgaccaagtagcatatttcaactgcttccccaacttcaccactagcttgagagatgcagctcactgtctcagactgagagtcaagacagacggcatatccatgaaagaagatatgcaagaactcgcaatagtatacaggatatactataaattgatgagtaccacagtagcccctaagacgaggattacaaatatctcaggtcttactactggattccttaccaatcagaagaaccattcacagcagatccataaagttacctggaatgaagtaacatttcctcctgaatggaaattatccggtccaaaaaagcaaccggaaagagcaagagcaaaaatctacgagagtagaagaactggagaaatcagcctcaacttcgacaatcacaggaagagtgatgtctgtcctgagaacaacctcaggataaatagcagtcttctgagaagaagctacagcactagagaagctagtgtcagtggtacaaaacccactattgaagagccaatatcagaagaagatctggaagctgatctaaacagaccagtccatatgcttagagctgagaggctctatgacctttatgaagaagctgagaattctcctgatcttccgatgtactttgaaactactctcactggggtagcaaaaaagtactacttttctttcaaggaaacagccagaggaaaagaatggctggaagaaatcaagacttcaaagtctccatctactaaagctctctttgaagaatatgagcaaatagtagaggtagcaaacatgaaaggctacaaaatagcctattctgatgatgaagatgacaataggtcagtttattctgcctggtctgaagaagaaacttcatcagaggagtctgagatagattctgaagtagagtacttcgaatccagacaaatgaatgttttgaaaatcaaaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

450

Amino Acids

52.15

Weight (kDa)

6.22

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1132
Acc36I ACCTGC 1 cut(s) 354
AccI GTMKAC 1 cut(s) 549
AclWI GGATC 3 cut(s) 107, 120, 658
AcsI RAATTY 4 cut(s) 224, 259, 308, 1012
AcuI CTGAAG 4 cut(s) 35, 240, 1281, 1320
AfaI GTAC 6 cut(s) 204, 577, 898, 1034, 1070, 1310
AfiI CCNNNNNNNGG 1 cut(s) 359
AhdI GACNNNNNGTC 2 cut(s) 494, 1237
AhlI ACTAGT 2 cut(s) 122, 131
AjnI CCWGG 2 cut(s) 677, 1253
Alw26I GTCTC 2 cut(s) 488, 1140
AlwI GGATC 3 cut(s) 107, 120, 658
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 473
ApoI RAATTY 4 cut(s) 224, 259, 308, 1012
AspS9I GGNCC 1 cut(s) 719
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 445
AsuII TTCGAA 1 cut(s) 1314
AvaII GGWCC 1 cut(s) 719
AxyI CCTNAGG 1 cut(s) 836
BamHI GGATCC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 845
BbvI GCAGC 1 cut(s) 485
BccI CCATC 1 cut(s) 1147
BceAI ACGGC 2 cut(s) 376, 523
BciT130I CCWGG 2 cut(s) 679, 1255
BciVI GTATCC 1 cut(s) 146
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 488, 1140
BcuI ACTAGT 2 cut(s) 122, 131
BfaI CTAG 6 cut(s) 123, 132, 384, 459, 876, 885
BfmI CTRYAG 2 cut(s) 33, 868
BfuAI ACCTGC 1 cut(s) 354
BfuI GTATCC 1 cut(s) 146
BglII AGATCT 2 cut(s) 291, 934
BisI GCNGC 1 cut(s) 474
BlsI GCNGC 1 cut(s) 475
BmcAI AGTACT 2 cut(s) 1070, 1310
Bme1390I CCNGG 3 cut(s) 152, 679, 1255
Bme18I GGWCC 1 cut(s) 719
BmeRI GACNNNNNGTC 2 cut(s) 494, 1237
BmgT120I GGNCC 1 cut(s) 719
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 3 cut(s) 152, 679, 1255
BmrI ACTGGG 1 cut(s) 1062
BmsI GCATC 3 cut(s) 189, 416, 460
BmuI ACTGGG 1 cut(s) 1062
BpiI GAAGAC 1 cut(s) 845
BplI GAGNNNNNCTC 2 cut(s) 192, 224
BpmI CTGGAG 2 cut(s) 365, 795
Bpu14I TTCGAA 1 cut(s) 1314
BpuEI CTTGAG 1 cut(s) 484
BpuMI CCSGG 1 cut(s) 152
BsaWI WCCGGW 3 cut(s) 138, 716, 733
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse1I ACTGG 6 cut(s) 324, 348, 631, 778, 959, 1057
Bse21I CCTNAGG 1 cut(s) 836
BseBI CCWGG 2 cut(s) 679, 1255
BseGI GGATG 1 cut(s) 407
BseLI CCNNNNNNNGG 1 cut(s) 359
BseMII CTCAG 9 cut(s) 482, 499, 627, 816, 848, 850, 969, 999, 1278
BseNI ACTGG 6 cut(s) 324, 348, 631, 778, 959, 1057
BseRI GAGGAG 1 cut(s) 1295
BseXI GCAGC 1 cut(s) 485
BseYI CCCAGC 1 cut(s) 353
BshFI GGCC 1 cut(s) 76
BsiSI CCGG 4 cut(s) 139, 152, 717, 734
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 2 cut(s) 488, 1140
BsnI GGCC 1 cut(s) 76
Bsp119I TTCGAA 1 cut(s) 1314
Bsp143I GATC 6 cut(s) 112, 291, 663, 934, 946, 1021
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 9 cut(s) 483, 498, 626, 817, 849, 849, 970, 1000, 1279
BspLI GGNNCC 1 cut(s) 114
BspMI ACCTGC 1 cut(s) 354
BspPI GGATC 3 cut(s) 107, 120, 658
BspQI GCTCTTC 1 cut(s) 909
BspT104I TTCGAA 1 cut(s) 1314
BsrI ACTGG 6 cut(s) 324, 348, 631, 778, 959, 1057
BssMI GATC 6 cut(s) 112, 291, 663, 934, 946, 1021
BssNAI GTATAC 1 cut(s) 550
Bst1107I GTATAC 1 cut(s) 550
Bst2UI CCWGG 2 cut(s) 679, 1255
Bst4CI ACNGT 3 cut(s) 37, 482, 583
Bst6I CTCTTC 2 cut(s) 803, 909
BstBI TTCGAA 1 cut(s) 1314
BstF5I GGATG 1 cut(s) 407
BstKTI GATC 6 cut(s) 115, 294, 666, 937, 949, 1024
BstMAI GTCTC 2 cut(s) 488, 1140
BstMBI GATC 6 cut(s) 112, 291, 663, 934, 946, 1021
BstNI CCWGG 2 cut(s) 679, 1255
BstSCI CCNGG 3 cut(s) 150, 677, 1253
BstSFI CTRYAG 2 cut(s) 33, 868
BstV1I GCAGC 1 cut(s) 485
BstV2I GAAGAC 1 cut(s) 845
BstX2I RGATCY 4 cut(s) 112, 291, 663, 934
BstYI RGATCY 4 cut(s) 112, 291, 663, 934
BstZ17I GTATAC 1 cut(s) 550
Bsu36I CCTNAGG 1 cut(s) 836
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 407
BtsIMutI CAGTG 3 cut(s) 478, 898, 1050
BveI ACCTGC 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 719
Csp6I GTAC 6 cut(s) 203, 576, 897, 1033, 1069, 1309
CviAII CATG 3 cut(s) 100, 517, 1192
CviQI GTAC 6 cut(s) 203, 576, 897, 1033, 1069, 1309
DpnI GATC 6 cut(s) 114, 293, 665, 936, 948, 1023
DpnII GATC 6 cut(s) 112, 291, 663, 934, 946, 1021
DrdI GACNNNNNNGTC 1 cut(s) 1132
DriI GACNNNNNGTC 2 cut(s) 494, 1237
DseDI GACNNNNNNGTC 1 cut(s) 1132
Eam1104I CTCTTC 2 cut(s) 803, 909
Eam1105I GACNNNNNGTC 2 cut(s) 494, 1237
EarI CTCTTC 2 cut(s) 803, 909
Eco47I GGWCC 1 cut(s) 719
Eco57I CTGAAG 4 cut(s) 35, 240, 1281, 1320
Eco81I CCTNAGG 1 cut(s) 836
EcoRI GAATTC 1 cut(s) 1012
EcoRII CCWGG 2 cut(s) 677, 1253
FaeI CATG 3 cut(s) 103, 520, 1195
FalI AAGNNNNNCTT 2 cut(s) 1058, 1090
FatI CATG 3 cut(s) 99, 516, 1191
FauNDI CATATG 1 cut(s) 966
FblI GTMKAC 1 cut(s) 549
Fnu4HI GCNGC 1 cut(s) 474
FokI GGATG 1 cut(s) 394
Fsp4HI GCNGC 1 cut(s) 474
FspBI CTAG 6 cut(s) 123, 132, 384, 459, 876, 885
GluI GCNGC 1 cut(s) 474
GsaI CCCAGC 1 cut(s) 357
GsuI CTGGAG 2 cut(s) 365, 795
HaeIII GGCC 1 cut(s) 76
HapII CCGG 4 cut(s) 139, 152, 717, 734
Hin1II CATG 3 cut(s) 103, 520, 1195
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HinfI GANTC 7 cut(s) 57, 85, 495, 630, 1283, 1295, 1316
HpaI GTTAAC 1 cut(s) 369
HpaII CCGG 4 cut(s) 139, 152, 717, 734
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 2 cut(s) 369, 550
Hpy188III TCNNGA 9 cut(s) 110, 499, 701, 824, 838, 938, 1019, 1123, 1320
Hpy8I GTNNAC 2 cut(s) 369, 550
HpyAV CCTTC 2 cut(s) 10, 126
HpyCH4III ACNGT 3 cut(s) 37, 482, 583
HpyCH4V TGCA 2 cut(s) 473, 532
Hsp92II CATG 3 cut(s) 103, 520, 1195
KspAI GTTAAC 1 cut(s) 369
Kzo9I GATC 6 cut(s) 112, 291, 663, 934, 946, 1021
LguI GCTCTTC 1 cut(s) 909
Lsp1109I GCAGC 1 cut(s) 485
LweI GCATC 3 cut(s) 189, 416, 460
MaeI CTAG 6 cut(s) 123, 132, 384, 459, 876, 885
MaeIII GTNAC 2 cut(s) 673, 688
MalI GATC 6 cut(s) 114, 293, 665, 936, 948, 1023
MboI GATC 6 cut(s) 112, 291, 663, 934, 946, 1021
MflI RGATCY 4 cut(s) 112, 291, 663, 934
MluCI AATT 9 cut(s) 224, 259, 267, 308, 338, 566, 710, 1012, 1348
MlyI GAGTC 2 cut(s) 504, 1292
MseI TTAA 2 cut(s) 176, 368
MslI CAYNNNNRTG 2 cut(s) 412, 515
MspI CCGG 4 cut(s) 139, 152, 717, 734
MspR9I CCNGG 3 cut(s) 152, 679, 1255
MvaI CCWGG 2 cut(s) 679, 1255
NciI CCSGG 1 cut(s) 152
NdeI CATATG 1 cut(s) 966
NdeII GATC 6 cut(s) 112, 291, 663, 934, 946, 1021
NlaIII CATG 3 cut(s) 103, 520, 1195
NlaIV GGNNCC 1 cut(s) 114
NspV TTCGAA 1 cut(s) 1314
PciSI GCTCTTC 1 cut(s) 909
PfeI GAWTC 5 cut(s) 57, 85, 630, 1295, 1316
PkrI GCNGC 1 cut(s) 475
PleI GAGTC 2 cut(s) 503, 1291
PpsI GAGTC 2 cut(s) 503, 1291
Psp6I CCWGG 2 cut(s) 677, 1253
PspFI CCCAGC 1 cut(s) 353
PspGI CCWGG 2 cut(s) 677, 1253
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 719
PsuI RGATCY 4 cut(s) 112, 291, 663, 934
RsaI GTAC 6 cut(s) 204, 577, 898, 1034, 1070, 1310
RsaNI GTAC 6 cut(s) 203, 576, 897, 1033, 1069, 1309
RseI CAYNNNNRTG 2 cut(s) 412, 515
SapI GCTCTTC 1 cut(s) 909
SaqAI TTAA 2 cut(s) 176, 368
SatI GCNGC 1 cut(s) 474
Sau3AI GATC 6 cut(s) 112, 291, 663, 934, 946, 1021
Sau96I GGNCC 1 cut(s) 719
ScaI AGTACT 2 cut(s) 1070, 1310
SchI GAGTC 2 cut(s) 504, 1292
ScrFI CCNGG 3 cut(s) 152, 679, 1255
SfaNI GCATC 3 cut(s) 189, 416, 460
SfcI CTRYAG 2 cut(s) 33, 868
SfuI TTCGAA 1 cut(s) 1314
SinI GGWCC 1 cut(s) 719
SmiMI CAYNNNNRTG 2 cut(s) 412, 515
SmlI CTYRAG 1 cut(s) 463
SmoI CTYRAG 1 cut(s) 463
SpeI ACTAGT 2 cut(s) 122, 131
Sse9I AATT 9 cut(s) 224, 259, 267, 308, 338, 566, 710, 1012, 1348
SspMI CTAG 6 cut(s) 123, 132, 384, 459, 876, 885
StyD4I CCNGG 3 cut(s) 150, 677, 1253
TaaI ACNGT 3 cut(s) 37, 482, 583
TaqI TCGA 2 cut(s) 795, 1314
TasI AATT 9 cut(s) 224, 259, 267, 308, 338, 566, 710, 1012, 1348
TatI WGTACW 4 cut(s) 202, 1032, 1068, 1308
TfiI GAWTC 5 cut(s) 57, 85, 630, 1295, 1316
Tru1I TTAA 2 cut(s) 176, 368
Tru9I TTAA 2 cut(s) 176, 368
TscAI CASTG 3 cut(s) 485, 898, 1057
TseI GCWGC 1 cut(s) 473
TspRI CASTG 3 cut(s) 485, 898, 1057
VpaK11BI GGWCC 1 cut(s) 719
XapI RAATTY 4 cut(s) 224, 259, 308, 1012
XmiI GTMKAC 1 cut(s) 549
XspI CTAG 6 cut(s) 123, 132, 384, 459, 876, 885
ZrmI AGTACT 2 cut(s) 1070, 1310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.