Rmu_sc0003371.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003371.1
OG0000976
Physical Location & Seq
Reverse (-)
60730 .. 61296
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003371.1_g000015.1.cds

Sequence Viewer

Length: 567 bp
atggaagaaggggatagctccaaagctttcatcatccgagaaaagggaaaattaaaactccttatgcagaaagtccctacaggtagaaaagaagagagaaattttcaaagatttgtcccagagaacaatatgcctagagttccgatcacgaactatgacatctggctaaatctagacaaggctctagataaaagaaaaaccattgaccaatgggtagatagcctgatgatggcctctgctcttacccttggaaaatttgaagctccagatcttcaggtatactatgaaactactcttactggagtagctaaaaagtattatctgtcgttcaaagaaactgccagaggaaaagactggctagaaaaaataaaaaattcaaaatctacgtatgattttgcagtacccatgtacgatcagttctgtggagacctctcaaacctgagtgaaaaggctaaagaaatggccaaatggaatatctatgctcttattcaaacaagaatctataaagttgagcagaatattgaaaatctcttatatactcttaaagaggaaaaaaaaacctcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

22.06

Weight (kDa)

9.06

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 279
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 3 cut(s) 100, 254, 373
AcuI CTGAAG 1 cut(s) 257
AfaI GTAC 2 cut(s) 402, 410
AfiI CCNNNNNNNGG 2 cut(s) 43, 229
AgsI TTSAA 6 cut(s) 107, 260, 331, 378, 491, 524
AluBI AGCT 4 cut(s) 18, 26, 263, 308
AluI AGCT 4 cut(s) 18, 26, 263, 308
Alw26I GTCTC 1 cut(s) 420
AoxI GGCC 2 cut(s) 231, 462
ApoI RAATTY 3 cut(s) 100, 254, 373
BalI TGGCCA 1 cut(s) 464
BccI CCATC 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 4 cut(s) 135, 173, 185, 359
BfmI CTRYAG 1 cut(s) 78
BglII AGATCT 1 cut(s) 268
BpmI CTGGAG 2 cut(s) 249, 321
BsaAI YACGTR 1 cut(s) 387
BsaI GGTCTC 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 247
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 229
Bse1I ACTGG 2 cut(s) 304, 359
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 2 cut(s) 43, 229
BseMII CTCAG 1 cut(s) 431
BseNI ACTGG 2 cut(s) 304, 359
BshFI GGCC 2 cut(s) 233, 464
BslFI GGGAC 2 cut(s) 59, 101
BslI CCNNNNNNNGG 2 cut(s) 43, 229
BsmAI GTCTC 1 cut(s) 420
BsmFI GGGAC 2 cut(s) 59, 101
BsnI GGCC 2 cut(s) 233, 464
Bso31I GGTCTC 1 cut(s) 420
Bsp143I GATC 3 cut(s) 144, 268, 412
BspANI GGCC 2 cut(s) 233, 464
BspCNI CTCAG 1 cut(s) 432
BspTNI GGTCTC 1 cut(s) 420
BsrI ACTGG 2 cut(s) 304, 359
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 3 cut(s) 144, 268, 412
BssNAI GTATAC 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 247
Bst1107I GTATAC 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 387
BstDEI CTNAG 1 cut(s) 440
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 3 cut(s) 147, 271, 415
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 3 cut(s) 144, 268, 412
BstSFI CTRYAG 1 cut(s) 78
BstSNI TACGTA 1 cut(s) 387
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BstZ17I GTATAC 1 cut(s) 280
BsuRI GGCC 2 cut(s) 233, 464
BtsCI GGATG 1 cut(s) 33
Csp6I GTAC 2 cut(s) 401, 409
CviAII CATG 1 cut(s) 406
CviQI GTAC 2 cut(s) 401, 409
DdeI CTNAG 1 cut(s) 440
DpnI GATC 3 cut(s) 146, 270, 414
DpnII GATC 3 cut(s) 144, 268, 412
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco105I TACGTA 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 420
Eco57I CTGAAG 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 1 cut(s) 409
FaqI GGGAC 2 cut(s) 59, 101
FatI CATG 1 cut(s) 405
FblI GTMKAC 1 cut(s) 279
FokI GGATG 1 cut(s) 20
FspBI CTAG 4 cut(s) 135, 173, 185, 359
GsuI CTGGAG 2 cut(s) 249, 321
HaeIII GGCC 2 cut(s) 233, 464
Hin1II CATG 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 1 cut(s) 498
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 2 cut(s) 38, 144
Hpy188III TCNNGA 4 cut(s) 148, 173, 185, 266
Hpy8I GTNNAC 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 2 cut(s) 67, 398
HpyF3I CTNAG 1 cut(s) 440
HpySE526I ACGT 1 cut(s) 386
Hsp92II CATG 1 cut(s) 409
Kzo9I GATC 3 cut(s) 144, 268, 412
LmnI GCTCC 2 cut(s) 23, 268
MaeI CTAG 4 cut(s) 135, 173, 185, 359
MaeII ACGT 1 cut(s) 386
MalI GATC 3 cut(s) 146, 270, 414
MboI GATC 3 cut(s) 144, 268, 412
MboII GAAGA 3 cut(s) 17, 104, 263
MflI RGATCY 1 cut(s) 268
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 4 cut(s) 50, 100, 254, 373
MluNI TGGCCA 1 cut(s) 464
MnlI CCTC 4 cut(s) 244, 338, 440, 541
Mox20I TGGCCA 1 cut(s) 464
MscI TGGCCA 1 cut(s) 464
MseI TTAA 3 cut(s) 53, 543, 565
Msp20I TGGCCA 1 cut(s) 464
NdeII GATC 3 cut(s) 144, 268, 412
NlaIII CATG 1 cut(s) 409
PfeI GAWTC 1 cut(s) 498
Ppu21I YACGTR 1 cut(s) 387
PsrI GAACNNNNNNTAC 2 cut(s) 401, 433
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 2 cut(s) 402, 410
RsaNI GTAC 2 cut(s) 401, 409
SaqAI TTAA 3 cut(s) 53, 543, 565
Sau3AI GATC 3 cut(s) 144, 268, 412
SfcI CTRYAG 1 cut(s) 78
SnaBI TACGTA 1 cut(s) 387
Sse9I AATT 4 cut(s) 50, 100, 254, 373
SspI AATATT 1 cut(s) 520
SspMI CTAG 4 cut(s) 135, 173, 185, 359
StyI CCWWGG 1 cut(s) 247
TaiI ACGT 1 cut(s) 389
TasI AATT 4 cut(s) 50, 100, 254, 373
TfiI GAWTC 1 cut(s) 498
Tru1I TTAA 3 cut(s) 53, 543, 565
Tru9I TTAA 3 cut(s) 53, 543, 565
TspDTI ATGAA 2 cut(s) 19, 300
XapI RAATTY 3 cut(s) 100, 254, 373
XbaI TCTAGA 2 cut(s) 172, 184
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 4 cut(s) 135, 173, 185, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.