Rmu_sc0000383.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000383.1
OG0000976
Physical Location & Seq
Reverse (-)
38129 .. 39925
1797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000383.1_g000008.1.cds

Sequence Viewer

Length: 1050 bp
atgaaaaatatactgaaggacaagaaagtgcctatagtaaaaccaaagaaagctaatggatttaaaccattagagaaacctgagaagaatcctgttccaaacatgatttttcttggaccctctactagtcaaactagtattcgtccgaaaaaatcaacagaaaatgccaaagcggcagtttttgaaagcagaaagactggaaatatcagtctaaaatttgacgatcacagaaaaagtgacttctgtcctgaaaatgtcaagataaacaacaatcttctcagaagaagctacagctctagagaagctagtgttagtggtactaaatactctaaaaaaccatcagagtccatcactgaagaagaattagaagctgatctgaacagaccagtaaatatgcttagagcacaaaagctctatgatttttatgatgaagcagaatcttgcgaaaatcctgaacgattagaaaaactaatcgaagaaatgaaaaatttcaaacctggaaaggaaagaaaactccttccctatcaggatattgaaatggaagaaggagaaagctccaaaactttcatcacaagagaaaaaggaaaagtaaaaccccctttacagaaagcccctacgggcaaaaatggaaaaagaaattctcaaagatttgtcccagaggacaatatacccagagtaccaatttccactcatggtatatggataaatctagacaaagctccagacaagagaaaaactcttgaccaatgggttgatagcctgatgatggcttctgctctaacccttggaaaatttgaagcactagatcttcaggtgtactatgaaactactcttaccggagtagcaaaaaagtattacttctctttcaaagagactgccagaggaagagactggcttgaagagataaaaaagtcaaatttaagtgagattacttatgattttgcagtacccctgtatgatcagttctgtggagatctctcaaatttaagtgagaaggccaaagaaacggcaaaatcaaatatctatatgctctcaaaatttgtgacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

40.03

Weight (kDa)

9.27

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 173
AcsI RAATTY 7 cut(s) 215, 487, 637, 791, 916, 982, 1037
AcuI CTGAAG 3 cut(s) 35, 375, 794
AfaI GTAC 4 cut(s) 319, 678, 818, 948
AfiI CCNNNNNNNGG 1 cut(s) 766
AgsI TTSAA 6 cut(s) 185, 493, 536, 797, 868, 899
AhlI ACTAGT 2 cut(s) 125, 134
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 8 cut(s) 53, 288, 294, 305, 371, 412, 555, 719
AluI AGCT 8 cut(s) 53, 288, 294, 305, 371, 412, 555, 719
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 2 cut(s) 866, 882
AoxI GGCC 1 cut(s) 996
ApoI RAATTY 7 cut(s) 215, 487, 637, 791, 916, 982, 1037
Asp700I GAANNNNTTC 1 cut(s) 488
AspS9I GGNCC 1 cut(s) 116
AvaII GGWCC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 406
BccI CCATC 3 cut(s) 346, 356, 760
BceAI ACGGC 1 cut(s) 1023
BciT130I CCWGG 1 cut(s) 498
BclI TGATCA 1 cut(s) 958
BcoDI GTCTC 2 cut(s) 866, 882
BcuI ACTAGT 2 cut(s) 125, 134
BfaI CTAG 6 cut(s) 126, 135, 297, 306, 710, 803
BfmI CTRYAG 2 cut(s) 33, 289
BglI GCCNNNNNGGC 1 cut(s) 173
BglII AGATCT 2 cut(s) 805, 973
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 498
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 498
BoxI GACNNNNGTC 1 cut(s) 243
BplI GAGNNNNNCTC 2 cut(s) 721, 753
BpmI CTGGAG 1 cut(s) 705
BsaJI CCNNGG 1 cut(s) 784
BsaWI WCCGGW 1 cut(s) 836
Bsc4I CCNNNNNNNGG 1 cut(s) 766
Bse1I ACTGG 3 cut(s) 202, 386, 896
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 1 cut(s) 784
BseLI CCNNNNNNNGG 1 cut(s) 766
BseMII CTCAG 2 cut(s) 72, 292
BseNI ACTGG 3 cut(s) 202, 386, 896
BshFI GGCC 1 cut(s) 998
BsiHKAI GWGCWC 1 cut(s) 406
BsiSI CCGG 1 cut(s) 837
BslFI GGGAC 1 cut(s) 638
BslI CCNNNNNNNGG 1 cut(s) 766
BsmAI GTCTC 2 cut(s) 866, 882
BsmFI GGGAC 1 cut(s) 638
BsnI GGCC 1 cut(s) 998
Bsp1286I GDGCHC 1 cut(s) 406
Bsp143I GATC 5 cut(s) 223, 373, 805, 958, 973
BspACI CCGC 1 cut(s) 173
BspANI GGCC 1 cut(s) 998
BspCNI CTCAG 2 cut(s) 73, 291
BspLI GGNNCC 1 cut(s) 118
BsrI ACTGG 3 cut(s) 202, 386, 896
BssECI CCNNGG 1 cut(s) 784
BssMI GATC 5 cut(s) 223, 373, 805, 958, 973
BssT1I CCWWGG 1 cut(s) 784
Bst2UI CCWGG 1 cut(s) 498
Bst6I CTCTTC 2 cut(s) 880, 894
BstDEI CTNAG 3 cut(s) 81, 278, 398
BstKTI GATC 5 cut(s) 226, 376, 808, 961, 976
BstMAI GTCTC 2 cut(s) 866, 882
BstMBI GATC 5 cut(s) 223, 373, 805, 958, 973
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 1 cut(s) 498
BstPAI GACNNNNGTC 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 496
BstSFI CTRYAG 2 cut(s) 33, 289
BstX2I RGATCY 2 cut(s) 805, 973
BstYI RGATCY 2 cut(s) 805, 973
BsuRI GGCC 1 cut(s) 998
BtsIMutI CAGTG 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 4 cut(s) 318, 677, 817, 947
CviAII CATG 3 cut(s) 103, 692, 1047
CviQI GTAC 4 cut(s) 318, 677, 817, 947
DdeI CTNAG 3 cut(s) 81, 278, 398
DpnI GATC 5 cut(s) 225, 375, 807, 960, 975
DpnII GATC 5 cut(s) 223, 373, 805, 958, 973
DraI TTTAAA 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 880, 894
EarI CTCTTC 2 cut(s) 880, 894
Eco130I CCWWGG 1 cut(s) 784
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 3 cut(s) 35, 375, 794
EcoRII CCWGG 1 cut(s) 496
EcoT14I CCWWGG 1 cut(s) 784
ErhI CCWWGG 1 cut(s) 784
FaeI CATG 3 cut(s) 106, 695, 1050
FalI AAGNNNNNCTT 2 cut(s) 842, 874
FaqI GGGAC 1 cut(s) 638
FatI CATG 3 cut(s) 102, 691, 1046
FbaI TGATCA 1 cut(s) 958
Fnu4HI GCNGC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 6 cut(s) 126, 135, 297, 306, 710, 803
GluI GCNGC 1 cut(s) 174
GsuI CTGGAG 1 cut(s) 705
HaeIII GGCC 1 cut(s) 998
HapII CCGG 1 cut(s) 837
Hin1II CATG 3 cut(s) 106, 695, 1050
HinfI GANTC 3 cut(s) 88, 344, 437
HpaII CCGG 1 cut(s) 837
Hpy166II GTNNAC 1 cut(s) 817
Hpy188I TCNGA 4 cut(s) 147, 281, 343, 378
Hpy188III TCNNGA 8 cut(s) 248, 259, 297, 452, 527, 710, 722, 740
Hpy8I GTNNAC 1 cut(s) 817
HpyAV CCTTC 4 cut(s) 10, 527, 539, 988
HpyCH4V TGCA 1 cut(s) 944
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 3 cut(s) 81, 278, 398
Hsp92II CATG 3 cut(s) 106, 695, 1050
Ksp22I TGATCA 1 cut(s) 958
Kzo9I GATC 5 cut(s) 223, 373, 805, 958, 973
LmnI GCTCC 2 cut(s) 560, 724
MaeI CTAG 6 cut(s) 126, 135, 297, 306, 710, 803
MaeIII GTNAC 2 cut(s) 236, 1042
MalI GATC 5 cut(s) 225, 375, 807, 960, 975
MboI GATC 5 cut(s) 223, 373, 805, 958, 973
MflI RGATCY 2 cut(s) 805, 973
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 9 cut(s) 215, 362, 487, 637, 681, 791, 916, 982, 1037
MlyI GAGTC 1 cut(s) 353
MnlI CCTC 3 cut(s) 130, 652, 875
MroXI GAANNNNTTC 1 cut(s) 488
MseI TTAA 3 cut(s) 63, 920, 986
MspI CCGG 1 cut(s) 837
MspR9I CCNGG 1 cut(s) 498
MvaI CCWGG 1 cut(s) 498
MwoI GCNNNNNNNGC 1 cut(s) 173
NdeII GATC 5 cut(s) 223, 373, 805, 958, 973
NlaIII CATG 3 cut(s) 106, 695, 1050
NlaIV GGNNCC 1 cut(s) 118
NmuCI GTSAC 2 cut(s) 236, 1042
PdmI GAANNNNTTC 1 cut(s) 488
PfeI GAWTC 2 cut(s) 88, 437
PkrI GCNGC 1 cut(s) 175
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PshAI GACNNNNGTC 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 116
PsrI GAACNNNNNNTAC 2 cut(s) 947, 979
PsuI RGATCY 2 cut(s) 805, 973
RsaI GTAC 4 cut(s) 319, 678, 818, 948
RsaNI GTAC 4 cut(s) 318, 677, 817, 947
SaqAI TTAA 3 cut(s) 63, 920, 986
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 5 cut(s) 223, 373, 805, 958, 973
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 1 cut(s) 498
SduI GDGCHC 1 cut(s) 406
SfcI CTRYAG 2 cut(s) 33, 289
SinI GGWCC 1 cut(s) 116
SpeI ACTAGT 2 cut(s) 125, 134
Sse9I AATT 9 cut(s) 215, 362, 487, 637, 681, 791, 916, 982, 1037
SsiI CCGC 1 cut(s) 173
SspMI CTAG 6 cut(s) 126, 135, 297, 306, 710, 803
StyD4I CCNGG 1 cut(s) 496
StyI CCWWGG 1 cut(s) 784
TaqI TCGA 1 cut(s) 474
TasI AATT 9 cut(s) 215, 362, 487, 637, 681, 791, 916, 982, 1037
TatI WGTACW 1 cut(s) 816
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 2 cut(s) 88, 437
Tru1I TTAA 3 cut(s) 63, 920, 986
Tru9I TTAA 3 cut(s) 63, 920, 986
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 2 cut(s) 236, 1042
Tsp45I GTSAC 2 cut(s) 236, 1042
TspDTI ATGAA 5 cut(s) 17, 444, 497, 556, 837
TspRI CASTG 1 cut(s) 358
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 7 cut(s) 215, 487, 637, 791, 916, 982, 1037
XbaI TCTAGA 2 cut(s) 296, 709
XmnI GAANNNNTTC 1 cut(s) 488
XspI CTAG 6 cut(s) 126, 135, 297, 306, 710, 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.