Rmu_sc0002316.1_g000089

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002316.1
OG0000976
Physical Location & Seq
Forward (+)
403613 .. 404560
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002316.1_g000089.1.cds

Sequence Viewer

Length: 948 bp
atgaaagatgatatgcaagaactggcgatagtataccgagtatactataaactgatgagcaccacagtagagctgaagacacggatctccaacatccctggtctcactaccggattcctcactagccagaagaaccattcacaacagacttggaatgaagtaacttttcctcttgaatggaaattgtccggtccaaaaaagctaccggaaagagcaaaagcaaaaatctacgagagtagaagaactggggaaatcagccttaacttcgacaatcacagaaaaagtgatgtctgtcctgagaacttcaggataaacagcaatcttctgagaaaaagctatagcacaagagaagctagtgtcagtggtacaaaacccactattgaagagtcaataacagaagaagacttggaagctgatctgaacagaccagtccatatactcagagctgagaagctctatgatctttataaagaggctgagaattgtgaaaatcctgaacgattagaaaaactaatcgaagaaatgaaagaattcaaattcagaaagacgagaaaagtctttccttatcaagatattgaaatggaagatggagaaagctccagaactttcataaaaagagaaacaagggaaacaaaactcccatttcagaaagcccccacgggtaaaaaaggagaaagaaattctcaaagattcgtccccgaggacaatctgccaagagttccgatcactaactatggcatctggttgaatctagacaagagtctagacaaaagaaaaactattgaccaatgggtagatagcctgatgatggcttctgcacttacccttggcaaatttgaagcgccagattgcaggtgtactatgaaactactcttactggagtggaaaaaaagtactacctatccttcaaagaaactgccagaggaagagactggcttgaagagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

315

Amino Acids

36.92

Weight (kDa)

9.0

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AarI CACCTGC 1 cut(s) 843
Acc36I ACCTGC 1 cut(s) 843
AccI GTMKAC 2 cut(s) 33, 42
AclWI GGATC 1 cut(s) 92
AcsI RAATTY 4 cut(s) 530, 536, 679, 833
AcuI CTGAAG 2 cut(s) 95, 289
AfaI GTAC 3 cut(s) 367, 859, 895
AfiI CCNNNNNNNGG 1 cut(s) 808
AgsI TTSAA 8 cut(s) 176, 383, 535, 578, 748, 839, 909, 940
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 8 cut(s) 73, 202, 336, 353, 413, 446, 454, 597
AluI AGCT 8 cut(s) 73, 202, 336, 353, 413, 446, 454, 597
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 107, 923
AlwI GGATC 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 698
ApoI RAATTY 4 cut(s) 530, 536, 679, 833
Asp700I GAANNNNTTC 1 cut(s) 530
AspLEI GCGC 1 cut(s) 844
AspS9I GGNCC 1 cut(s) 191
AvaI CYCGRG 1 cut(s) 698
AvaII GGWCC 1 cut(s) 191
BbsI GAAGAC 2 cut(s) 83, 408
Bbv12I GWGCWC 1 cut(s) 62
BccI CCATC 2 cut(s) 581, 802
BciT130I CCWGG 1 cut(s) 99
BcoDI GTCTC 2 cut(s) 107, 923
BfaI CTAG 4 cut(s) 123, 354, 752, 764
BfmI CTRYAG 1 cut(s) 337
BfoI RGCGCY 1 cut(s) 845
BfuAI ACCTGC 1 cut(s) 843
BmcAI AGTACT 1 cut(s) 895
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 191
BmeT110I CYCGRG 1 cut(s) 698
BmgT120I GGNCC 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 99
BmrI ACTGGG 1 cut(s) 255
BmsI GCATC 1 cut(s) 747
BmuI ACTGGG 1 cut(s) 255
BoxI GACNNNNGTC 1 cut(s) 759
BpiI GAAGAC 2 cut(s) 83, 408
BpmI CTGGAG 2 cut(s) 583, 899
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 4 cut(s) 97, 657, 699, 826
BsaWI WCCGGW 3 cut(s) 110, 188, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 808
Bse1I ACTGG 5 cut(s) 27, 250, 428, 882, 937
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 4 cut(s) 97, 657, 699, 826
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 808
BseMII CTCAG 5 cut(s) 288, 317, 438, 454, 468
BseNI ACTGG 5 cut(s) 27, 250, 428, 882, 937
BsgI GTGCAG 1 cut(s) 801
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 698
BsiSI CCGG 3 cut(s) 111, 189, 206
BslFI GGGAC 1 cut(s) 680
BslI CCNNNNNNNGG 1 cut(s) 808
BsmAI GTCTC 2 cut(s) 107, 923
BsmFI GGGAC 1 cut(s) 680
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 698
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 4 cut(s) 84, 415, 460, 723
BspCNI CTCAG 5 cut(s) 289, 318, 439, 453, 469
BspMI ACCTGC 1 cut(s) 843
BspPI GGATC 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 107
BsrI ACTGG 5 cut(s) 27, 250, 428, 882, 937
BssECI CCNNGG 4 cut(s) 97, 657, 699, 826
BssMI GATC 4 cut(s) 84, 415, 460, 723
BssNAI GTATAC 2 cut(s) 34, 43
BssT1I CCWWGG 1 cut(s) 826
Bst1107I GTATAC 2 cut(s) 34, 43
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 3 cut(s) 378, 921, 935
BstDEI CTNAG 5 cut(s) 297, 326, 440, 447, 477
BstDSI CCRYGG 1 cut(s) 657
BstF5I GGATG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 845
BstHHI GCGC 1 cut(s) 844
BstKTI GATC 4 cut(s) 87, 418, 463, 726
BstMAI GTCTC 2 cut(s) 107, 923
BstMBI GATC 4 cut(s) 84, 415, 460, 723
BstNI CCWGG 1 cut(s) 99
BstPAI GACNNNNGTC 1 cut(s) 759
BstSCI CCNGG 1 cut(s) 97
BstSFI CTRYAG 1 cut(s) 337
BstV2I GAAGAC 2 cut(s) 83, 408
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BstZ17I GTATAC 2 cut(s) 34, 43
BtgI CCRYGG 1 cut(s) 657
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 367
BveI ACCTGC 1 cut(s) 843
CfoI GCGC 1 cut(s) 844
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 3 cut(s) 366, 858, 894
CviQI GTAC 3 cut(s) 366, 858, 894
DdeI CTNAG 5 cut(s) 297, 326, 440, 447, 477
DpnI GATC 4 cut(s) 86, 417, 462, 725
DpnII GATC 4 cut(s) 84, 415, 460, 723
Eam1104I CTCTTC 3 cut(s) 378, 921, 935
EarI CTCTTC 3 cut(s) 378, 921, 935
Eco130I CCWWGG 1 cut(s) 826
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 191
Eco57I CTGAAG 2 cut(s) 95, 289
Eco88I CYCGRG 1 cut(s) 698
EcoRI GAATTC 1 cut(s) 530
EcoRII CCWGG 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 826
ErhI CCWWGG 1 cut(s) 826
FaqI GGGAC 1 cut(s) 680
FblI GTMKAC 2 cut(s) 33, 42
FokI GGATG 1 cut(s) 80
FspBI CTAG 4 cut(s) 123, 354, 752, 764
GlaI GCGC 1 cut(s) 843
GsuI CTGGAG 2 cut(s) 583, 899
HaeII RGCGCY 1 cut(s) 845
HapII CCGG 3 cut(s) 111, 189, 206
HhaI GCGC 1 cut(s) 844
Hin6I GCGC 1 cut(s) 842
HinP1I GCGC 1 cut(s) 842
HinfI GANTC 5 cut(s) 114, 386, 690, 748, 760
HpaII CCGG 3 cut(s) 111, 189, 206
Hpy166II GTNNAC 3 cut(s) 34, 43, 858
Hpy188I TCNGA 6 cut(s) 327, 420, 443, 542, 648, 723
Hpy188III TCNNGA 8 cut(s) 173, 296, 307, 494, 569, 600, 752, 764
Hpy8I GTNNAC 3 cut(s) 34, 43, 858
HpyAV CCTTC 1 cut(s) 915
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 3 cut(s) 16, 818, 852
HpyF3I CTNAG 5 cut(s) 297, 326, 440, 447, 477
HspAI GCGC 1 cut(s) 842
Kzo9I GATC 4 cut(s) 84, 415, 460, 723
LmnI GCTCC 1 cut(s) 602
LweI GCATC 1 cut(s) 747
MaeI CTAG 4 cut(s) 123, 354, 752, 764
MaeIII GTNAC 1 cut(s) 160
MalI GATC 4 cut(s) 86, 417, 462, 725
MboI GATC 4 cut(s) 84, 415, 460, 723
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 6 cut(s) 182, 481, 530, 536, 679, 833
MlyI GAGTC 2 cut(s) 395, 769
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 5 cut(s) 128, 180, 466, 694, 916
MroXI GAANNNNTTC 1 cut(s) 530
MseI TTAA 1 cut(s) 261
MspI CCGG 3 cut(s) 111, 189, 206
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
NdeII GATC 4 cut(s) 84, 415, 460, 723
PaqCI CACCTGC 1 cut(s) 843
PdmI GAANNNNTTC 1 cut(s) 530
PfeI GAWTC 3 cut(s) 114, 690, 748
PleI GAGTC 2 cut(s) 394, 768
PpsI GAGTC 2 cut(s) 394, 768
PshAI GACNNNNGTC 1 cut(s) 759
PsiI TTATAA 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspPI GGNCC 1 cut(s) 191
PsuI RGATCY 1 cut(s) 84
RsaI GTAC 3 cut(s) 367, 859, 895
RsaNI GTAC 3 cut(s) 366, 858, 894
SaqAI TTAA 1 cut(s) 261
Sau3AI GATC 4 cut(s) 84, 415, 460, 723
Sau96I GGNCC 1 cut(s) 191
ScaI AGTACT 1 cut(s) 895
SchI GAGTC 2 cut(s) 395, 769
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 62
SfaNI GCATC 1 cut(s) 747
SfcI CTRYAG 1 cut(s) 337
SinI GGWCC 1 cut(s) 191
Sse9I AATT 6 cut(s) 182, 481, 530, 536, 679, 833
SspMI CTAG 4 cut(s) 123, 354, 752, 764
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 1 cut(s) 826
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 2 cut(s) 267, 516
TasI AATT 6 cut(s) 182, 481, 530, 536, 679, 833
TatI WGTACW 2 cut(s) 857, 893
TfiI GAWTC 3 cut(s) 114, 690, 748
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 1 cut(s) 367
TspDTI ATGAA 5 cut(s) 17, 171, 539, 598, 878
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 191
XapI RAATTY 4 cut(s) 530, 536, 679, 833
XbaI TCTAGA 2 cut(s) 751, 763
XmiI GTMKAC 2 cut(s) 33, 42
XmnI GAANNNNTTC 1 cut(s) 530
XspI CTAG 4 cut(s) 123, 354, 752, 764
ZrmI AGTACT 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.