Rmu_sc0002501.1_g000027

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002501.1
OG0000976
Physical Location & Seq
Forward (+)
135095 .. 135889
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002501.1_g000027.1.cds

Sequence Viewer

Length: 795 bp
atgcacaaggttacttcgaatgaagttacttttcctattgaatggaaattgtctggtccgaaaaaaccagcagaaaatgccaaagcggcaatttatgaaagcagaaagactggagatatcagtctaaaattcgacgatcacagaaaaagtgacgtctgtcttgaaaatgtcaggataaacaacaatcttctcagaagaagctacagcactagagaagctagtgttagtggtaccaaatactctgaagaaccatcagagtccatcactgaagaagatttagaagctgatctgaacagaccagtaaatatgcttagagcacaaaagctctacgatctctatgataaagcagagtcctgcgaagatcctgaacgattagaaaaactaatcgaagaaatgaaaatttcaaaccaggaaaggaaagaaaactccttccctatcaagatattgaaatggaagaaggagaaagctccaaaaactttcatcaccagagaaaaaggaaaagtaaaactccctttacagaaagcccctatgggcaaaaatggagaaagaaactctcaaagatttgtcccagaagacaatatacccagagtaccaatttccactcatggtatctggctgaatctagacaaagctctagacaagagaaaaactcttgaccaatgggttgatagcctgatgatggcttctgctctaacccttgaaaaatttgaagcaccagatcttcaggtgtactatgaaactattcttactggagtagcaaaaaagtattacttctcttttaaagagactgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

264

Amino Acids

30.57

Weight (kDa)

8.77

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 156
Acc65I GGTACC 1 cut(s) 230
AccB1I GGYRCC 1 cut(s) 230
AciI CCGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 356
AcsI RAATTY 3 cut(s) 128, 399, 704
AcuI CTGAAG 3 cut(s) 264, 288, 707
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 3 cut(s) 232, 591, 731
AfiI CCNNNNNNNGG 1 cut(s) 679
AgsI TTSAA 6 cut(s) 41, 164, 405, 448, 701, 710
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 6 cut(s) 201, 218, 284, 325, 467, 632
AluI AGCT 6 cut(s) 201, 218, 284, 325, 467, 632
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 779
AlwI GGATC 1 cut(s) 356
ApoI RAATTY 3 cut(s) 128, 399, 704
Asp700I GAANNNNTTC 1 cut(s) 741
Asp718I GGTACC 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 475
AsuII TTCGAA 1 cut(s) 17
AvaII GGWCC 1 cut(s) 56
BanI GGYRCC 1 cut(s) 230
BarI GAAGNNNNNNTAC 2 cut(s) 564, 596
BbsI GAAGAC 1 cut(s) 579
Bbv12I GWGCWC 1 cut(s) 319
BccI CCATC 3 cut(s) 259, 269, 673
BciT130I CCWGG 1 cut(s) 410
BcoDI GTCTC 1 cut(s) 779
BfaI CTAG 4 cut(s) 210, 219, 623, 635
BfmI CTRYAG 1 cut(s) 202
BglI GCCNNNNNGGC 1 cut(s) 86
BglII AGATCT 1 cut(s) 718
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 410
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 410
BoxI GACNNNNGTC 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 579
BplI GAGNNNNNCTC 2 cut(s) 634, 666
BpmI CTGGAG 2 cut(s) 132, 771
Bpu14I TTCGAA 1 cut(s) 17
BsaHI GRCGYC 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 679
Bse1I ACTGG 3 cut(s) 115, 299, 754
BseBI CCWGG 1 cut(s) 410
BseLI CCNNNNNNNGG 1 cut(s) 679
BseMII CTCAG 1 cut(s) 205
BseNI ACTGG 3 cut(s) 115, 299, 754
BshNI GGYRCC 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 319
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 1 cut(s) 679
BsmAI GTCTC 1 cut(s) 779
BsmFI GGGAC 1 cut(s) 551
Bsp119I TTCGAA 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 319
Bsp143I GATC 5 cut(s) 136, 286, 331, 361, 718
BspACI CCGC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 1 cut(s) 356
BspT104I TTCGAA 1 cut(s) 17
BspT107I GGYRCC 1 cut(s) 230
BsrI ACTGG 3 cut(s) 115, 299, 754
BssMI GATC 5 cut(s) 136, 286, 331, 361, 718
BssNI GRCGYC 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 410
BstACI GRCGYC 1 cut(s) 153
BstAPI GCANNNNNTGC 1 cut(s) 77
BstBI TTCGAA 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 191, 311
BstKTI GATC 5 cut(s) 139, 289, 334, 364, 721
BstMAI GTCTC 1 cut(s) 779
BstMBI GATC 5 cut(s) 136, 286, 331, 361, 718
BstMWI GCNNNNNNNGC 2 cut(s) 77, 86
BstNI CCWGG 1 cut(s) 410
BstPAI GACNNNNGTC 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 408
BstSFI CTRYAG 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 579
BstX2I RGATCY 2 cut(s) 361, 718
BstYI RGATCY 2 cut(s) 361, 718
BtsIMutI CAGTG 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 56
Csp6I GTAC 3 cut(s) 231, 590, 730
CviAII CATG 1 cut(s) 605
CviQI GTAC 3 cut(s) 231, 590, 730
DdeI CTNAG 2 cut(s) 191, 311
DpnI GATC 5 cut(s) 138, 288, 333, 363, 720
DpnII GATC 5 cut(s) 136, 286, 331, 361, 718
DraI TTTAAA 1 cut(s) 781
Eco32I GATATC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 56
Eco57I CTGAAG 3 cut(s) 264, 288, 707
EcoRII CCWGG 1 cut(s) 408
EcoRV GATATC 1 cut(s) 118
FaeI CATG 1 cut(s) 608
FaiI YATR 7 cut(s) 96, 308, 339, 530, 581, 606, 735
FalI AAGNNNNNCTT 2 cut(s) 755, 787
FaqI GGGAC 1 cut(s) 551
FatI CATG 1 cut(s) 604
Fnu4HI GCNGC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 4 cut(s) 210, 219, 623, 635
GluI GCNGC 1 cut(s) 87
GsuI CTGGAG 2 cut(s) 132, 771
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 1 cut(s) 608
HinfI GANTC 3 cut(s) 257, 350, 619
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 1 cut(s) 730
Hpy188I TCNGA 5 cut(s) 60, 194, 244, 256, 291
Hpy188III TCNNGA 7 cut(s) 161, 172, 365, 439, 623, 635, 653
Hpy8I GTNNAC 1 cut(s) 730
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 439, 451
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 86
HpyF3I CTNAG 2 cut(s) 191, 311
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 1 cut(s) 608
KpnI GGTACC 1 cut(s) 234
Kzo9I GATC 5 cut(s) 136, 286, 331, 361, 718
LmnI GCTCC 1 cut(s) 472
MaeI CTAG 4 cut(s) 210, 219, 623, 635
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 3 cut(s) 10, 25, 149
MalI GATC 5 cut(s) 138, 288, 333, 363, 720
MboI GATC 5 cut(s) 136, 286, 331, 361, 718
MflI RGATCY 2 cut(s) 361, 718
MhlI GDGCHC 1 cut(s) 319
MluCI AATT 6 cut(s) 47, 90, 128, 399, 594, 704
MlyI GAGTC 2 cut(s) 266, 359
MroXI GAANNNNTTC 1 cut(s) 741
MseI TTAA 1 cut(s) 780
MspR9I CCNGG 1 cut(s) 410
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 2 cut(s) 77, 86
NdeII GATC 5 cut(s) 136, 286, 331, 361, 718
NlaIII CATG 1 cut(s) 608
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 149
NspV TTCGAA 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 741
PfeI GAWTC 1 cut(s) 619
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 2 cut(s) 265, 358
PpsI GAGTC 2 cut(s) 265, 358
PshAI GACNNNNGTC 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 408
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 56
PsuI RGATCY 2 cut(s) 361, 718
RsaI GTAC 3 cut(s) 232, 591, 731
RsaNI GTAC 3 cut(s) 231, 590, 730
SaqAI TTAA 1 cut(s) 780
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 5 cut(s) 136, 286, 331, 361, 718
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 2 cut(s) 266, 359
ScrFI CCNGG 1 cut(s) 410
SduI GDGCHC 1 cut(s) 319
SetI ASST 9 cut(s) 12, 156, 203, 220, 286, 327, 469, 634, 729
SfcI CTRYAG 1 cut(s) 202
SfuI TTCGAA 1 cut(s) 17
SinI GGWCC 1 cut(s) 56
Sse9I AATT 6 cut(s) 47, 90, 128, 399, 594, 704
SsiI CCGC 1 cut(s) 86
SspMI CTAG 4 cut(s) 210, 219, 623, 635
StyD4I CCNGG 1 cut(s) 408
TaiI ACGT 1 cut(s) 156
TaqI TCGA 3 cut(s) 17, 132, 387
TasI AATT 6 cut(s) 47, 90, 128, 399, 594, 704
TatI WGTACW 1 cut(s) 729
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 619
Tru1I TTAA 1 cut(s) 780
Tru9I TTAA 1 cut(s) 780
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 5 cut(s) 36, 111, 410, 469, 750
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 3 cut(s) 128, 399, 704
XbaI TCTAGA 2 cut(s) 622, 634
XmnI GAANNNNTTC 1 cut(s) 741
XspI CTAG 4 cut(s) 210, 219, 623, 635
ZraI GACGTC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.