Rmu_sc0000458.1_g000020

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000458.1
OG0000976
Physical Location & Seq
Reverse (-)
64276 .. 65367
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000458.1_g000020.1.cds

Sequence Viewer

Length: 1092 bp
atgcaagaactcacaatagtatacagaatatactacaaattgatgagcactacagtagcccccaagacaaggataaaaaatattcctagtctgactactggctttctcaccaatcagaagaaccattcacaacagattcgtaaagttacttggaatgaagtaacttttcctcttgaatggaaattatctggtccaaaaaaaccaccggaaagtgcgaaagcaagaatttatgaaagtagaaagactggagaaatcagtctcaattttgacaatcacagaaaaagtgatgtctgtcctgcgaacctcatggtaaacaggaatcttctcagaagaagctacagcactagagaagctagtgttagtggtacaaaacccactattgaagaacctatatctgaagaaaaattagaagctgatctaaacagaccagttactatgctcatagcagaaaagctctatgaactctatgaagaagtagaatcttgcgaaaatcctgaacgagtagaaaaactaatcgaaacaatgaaagaattcaaaatcagaaagacgagaaaagtctttccctatcaagatgttgaaatggaagaaggagatagctccaaaactttcattatcagagaaaaagggaaaataaaactcccagttcagaaagcccccacgggtagaaaaggggaaagaaattcccaaagatttgtcccagatgacaatatgcctaaagttccaatcacgaactatggcatctggctaaatctagacaaggctctagataaaagaaaagtcattgaccaatgggtagatagcctgatgatggcttctgcactgacccttggaaaatttgaagcgccagatttgcaagtgtactatgaaactactcttactggagtagcaaaaaagtattatctgtctttcaaagagactgccagaggaagagactggctagaagaaatcaaaaattcaaagtctccgtatgattttgcagtacccctttatgatcaattctgtagagatctctcaaatctgagtgaaaaggctaaagaaacggctaagcaccagatttgcaagtgtactatgaaactactcttactggagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

363

Amino Acids

42.17

Weight (kDa)

9.16

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 21
AcsI RAATTY 5 cut(s) 225, 530, 679, 833, 952
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 4 cut(s) 367, 860, 981, 1066
AfiI CCNNNNNNNGG 2 cut(s) 69, 808
AgsI TTSAA 7 cut(s) 176, 383, 535, 578, 839, 910, 957
AluBI AGCT 5 cut(s) 336, 353, 413, 454, 597
AluI AGCT 5 cut(s) 336, 353, 413, 454, 597
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 4 cut(s) 263, 908, 924, 966
ApoI RAATTY 5 cut(s) 225, 530, 679, 833, 952
Asp700I GAANNNNTTC 1 cut(s) 530
AspLEI GCGC 1 cut(s) 844
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 100
AvaII GGWCC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 50
BccI CCATC 1 cut(s) 802
BceAI ACGGC 1 cut(s) 1056
BclI TGATCA 1 cut(s) 991
BcoDI GTCTC 4 cut(s) 263, 908, 924, 966
BfaI CTAG 6 cut(s) 87, 345, 354, 752, 764, 938
BfmI CTRYAG 3 cut(s) 51, 337, 1000
BfoI RGCGCY 1 cut(s) 845
BglII AGATCT 1 cut(s) 1006
BlpI GCTNAGC 1 cut(s) 1044
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmrI ACTGGG 1 cut(s) 635
BmsI GCATC 1 cut(s) 747
BmuI ACTGGG 1 cut(s) 635
BpmI CTGGAG 2 cut(s) 267, 900
Bpu1102I GCTNAGC 1 cut(s) 1044
BsaJI CCNNGG 2 cut(s) 657, 826
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 808
Bse1I ACTGG 7 cut(s) 103, 250, 428, 641, 883, 938, 1089
BseDI CCNNGG 2 cut(s) 657, 826
BseLI CCNNNNNNNGG 2 cut(s) 69, 808
BseMII CTCAG 2 cut(s) 340, 1010
BseNI ACTGG 7 cut(s) 103, 250, 428, 641, 883, 938, 1089
BsgI GTGCAG 1 cut(s) 801
BsiHKAI GWGCWC 1 cut(s) 50
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 680
BslI CCNNNNNNNGG 2 cut(s) 69, 808
BsmAI GTCTC 4 cut(s) 263, 908, 924, 966
BsmFI GGGAC 1 cut(s) 680
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 3 cut(s) 415, 991, 1006
Bsp1720I GCTNAGC 1 cut(s) 1044
BspCNI CTCAG 2 cut(s) 339, 1011
BsrI ACTGG 7 cut(s) 103, 250, 428, 641, 883, 938, 1089
BssECI CCNNGG 2 cut(s) 657, 826
BssMI GATC 3 cut(s) 415, 991, 1006
BssNAI GTATAC 1 cut(s) 22
BssT1I CCWWGG 1 cut(s) 826
Bst1107I GTATAC 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 922
BstDEI CTNAG 3 cut(s) 326, 1019, 1044
BstDSI CCRYGG 1 cut(s) 657
BstH2I RGCGCY 1 cut(s) 845
BstHHI GCGC 1 cut(s) 844
BstKTI GATC 3 cut(s) 418, 994, 1009
BstMAI GTCTC 4 cut(s) 263, 908, 924, 966
BstMBI GATC 3 cut(s) 415, 991, 1006
BstMWI GCNNNNNNNGC 1 cut(s) 850
BstSFI CTRYAG 3 cut(s) 51, 337, 1000
BstX2I RGATCY 1 cut(s) 1006
BstYI RGATCY 1 cut(s) 1006
BstZ17I GTATAC 1 cut(s) 22
BtgI CCRYGG 1 cut(s) 657
BtsIMutI CAGTG 1 cut(s) 818
CfoI GCGC 1 cut(s) 844
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 4 cut(s) 366, 859, 980, 1065
CviAII CATG 1 cut(s) 307
CviQI GTAC 4 cut(s) 366, 859, 980, 1065
DdeI CTNAG 3 cut(s) 326, 1019, 1044
DpnI GATC 3 cut(s) 417, 993, 1008
DpnII GATC 3 cut(s) 415, 991, 1006
Eam1104I CTCTTC 1 cut(s) 922
EarI CTCTTC 1 cut(s) 922
Eco130I CCWWGG 1 cut(s) 826
Eco47I GGWCC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 417
EcoRI GAATTC 1 cut(s) 530
EcoT14I CCWWGG 1 cut(s) 826
ErhI CCWWGG 1 cut(s) 826
FaeI CATG 1 cut(s) 310
FaqI GGGAC 1 cut(s) 680
FatI CATG 1 cut(s) 306
FbaI TGATCA 1 cut(s) 991
FblI GTMKAC 1 cut(s) 21
FspBI CTAG 6 cut(s) 87, 345, 354, 752, 764, 938
GlaI GCGC 1 cut(s) 843
GsuI CTGGAG 2 cut(s) 267, 900
HaeII RGCGCY 1 cut(s) 845
HapII CCGG 1 cut(s) 206
HhaI GCGC 1 cut(s) 844
Hin1II CATG 1 cut(s) 310
Hin6I GCGC 1 cut(s) 842
HinP1I GCGC 1 cut(s) 842
HinfI GANTC 3 cut(s) 136, 319, 479
HpaII CCGG 1 cut(s) 206
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 4 cut(s) 22, 313, 859, 1065
Hpy188I TCNGA 8 cut(s) 93, 117, 329, 397, 542, 617, 648, 1020
Hpy188III TCNNGA 6 cut(s) 173, 494, 569, 727, 752, 764
Hpy8I GTNNAC 4 cut(s) 22, 313, 859, 1065
HpyAV CCTTC 1 cut(s) 581
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 5 cut(s) 4, 818, 853, 977, 1059
HpyF10VI GCNNNNNNNGC 1 cut(s) 850
HpyF3I CTNAG 3 cut(s) 326, 1019, 1044
Hsp92II CATG 1 cut(s) 310
HspAI GCGC 1 cut(s) 842
Ksp22I TGATCA 1 cut(s) 991
Kzo9I GATC 3 cut(s) 415, 991, 1006
LmnI GCTCC 1 cut(s) 602
LweI GCATC 1 cut(s) 747
MaeI CTAG 6 cut(s) 87, 345, 354, 752, 764, 938
MaeIII GTNAC 3 cut(s) 145, 160, 430
MalI GATC 3 cut(s) 417, 993, 1008
MboI GATC 3 cut(s) 415, 991, 1006
MboII GAAGA 9 cut(s) 130, 314, 342, 395, 410, 482, 596, 939, 953
MflI RGATCY 1 cut(s) 1006
MhlI GDGCHC 1 cut(s) 50
MnlI CCTC 3 cut(s) 180, 314, 917
MroXI GAANNNNTTC 1 cut(s) 530
MspI CCGG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 850
NdeII GATC 3 cut(s) 415, 991, 1006
NlaIII CATG 1 cut(s) 310
PdmI GAANNNNTTC 1 cut(s) 530
PfeI GAWTC 3 cut(s) 136, 319, 479
PspPI GGNCC 1 cut(s) 191
PsuI RGATCY 1 cut(s) 1006
RsaI GTAC 4 cut(s) 367, 860, 981, 1066
RsaNI GTAC 4 cut(s) 366, 859, 980, 1065
Sau3AI GATC 3 cut(s) 415, 991, 1006
Sau96I GGNCC 1 cut(s) 191
SduI GDGCHC 1 cut(s) 50
SetI ASST 7 cut(s) 306, 338, 355, 391, 415, 456, 599
SfaNI GCATC 1 cut(s) 747
SfcI CTRYAG 3 cut(s) 51, 337, 1000
SinI GGWCC 1 cut(s) 191
SspI AATATT 1 cut(s) 82
SspMI CTAG 6 cut(s) 87, 345, 354, 752, 764, 938
StyI CCWWGG 1 cut(s) 826
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 516
TatI WGTACW 2 cut(s) 858, 1064
TfiI GAWTC 3 cut(s) 136, 319, 479
TscAI CASTG 1 cut(s) 825
TspDTI ATGAA 8 cut(s) 171, 246, 474, 483, 539, 598, 879, 1085
TspGWI ACGGA 1 cut(s) 954
TspRI CASTG 1 cut(s) 825
VpaK11BI GGWCC 1 cut(s) 191
XapI RAATTY 5 cut(s) 225, 530, 679, 833, 952
XbaI TCTAGA 2 cut(s) 751, 763
XmiI GTMKAC 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 530
XspI CTAG 6 cut(s) 87, 345, 354, 752, 764, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.