Rmu_sc0003315.1_g000022

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003315.1
OG0000976
Physical Location & Seq
Reverse (-)
82892 .. 83209
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003315.1_g000022.1.cds

Sequence Viewer

Length: 318 bp
atgtctagatacaacaatcttcttagaagaagctacagcactagagaagctagtgttagtggtaccaaattcactgttgaagaaccaacagagtccatcactgaagaagaattagaagctgatctgaacagaccagtaaatatggttagagtacaaaagctctatgacctttatgatgaagcagaatcttgtgaacgattagaaaaactaatagaagagatgaagaatctcaaactaagaaaggaaagaaaactccttccctatcaggatattgaaatggaagaaggagaaaactccaaaacattcatcataagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.54

Weight (kDa)

4.95

Isoelectric Point (pI)

71.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 62
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 2 cut(s) 64, 153
AgsI TTSAA 2 cut(s) 80, 275
AluBI AGCT 4 cut(s) 33, 50, 119, 160
AluI AGCT 4 cut(s) 33, 50, 119, 160
ApoI RAATTY 1 cut(s) 68
Asp718I GGTACC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 62
BccI CCATC 1 cut(s) 104
BfaI CTAG 3 cut(s) 6, 42, 51
BfmI CTRYAG 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 64
BspT107I GGYRCC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 134
BssMI GATC 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 210
BstDEI CTNAG 2 cut(s) 23, 236
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 34
BtsIMutI CAGTG 2 cut(s) 72, 99
Csp6I GTAC 2 cut(s) 63, 152
CviJI RGCY 4 cut(s) 33, 50, 119, 160
CviKI_1 RGCY 4 cut(s) 33, 50, 119, 160
CviQI GTAC 2 cut(s) 63, 152
DdeI CTNAG 2 cut(s) 23, 236
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 123
FaiI YATR 4 cut(s) 143, 165, 174, 311
FspBI CTAG 3 cut(s) 6, 42, 51
HinfI GANTC 3 cut(s) 92, 185, 226
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 2 cut(s) 6, 266
Hpy8I GTNNAC 1 cut(s) 194
HpyAV CCTTC 2 cut(s) 266, 278
HpyCH4III ACNGT 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 23, 236
KpnI GGTACC 1 cut(s) 66
Kzo9I GATC 1 cut(s) 121
LpnPI CCDG 2 cut(s) 147, 251
MaeI CTAG 3 cut(s) 6, 42, 51
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 8 cut(s) 11, 39, 92, 116, 119, 227, 235, 293
MluCI AATT 2 cut(s) 68, 110
MlyI GAGTC 1 cut(s) 101
NdeII GATC 1 cut(s) 121
NlaIV GGNNCC 1 cut(s) 64
PfeI GAWTC 2 cut(s) 185, 226
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 64
RsaI GTAC 2 cut(s) 64, 153
RsaNI GTAC 2 cut(s) 63, 152
Sau3AI GATC 1 cut(s) 121
SchI GAGTC 1 cut(s) 101
SetI ASST 5 cut(s) 35, 52, 121, 162, 171
SfcI CTRYAG 1 cut(s) 34
SgeI CNNG 6 cut(s) 18, 54, 63, 146, 201, 278
Sse9I AATT 2 cut(s) 68, 110
SspMI CTAG 3 cut(s) 6, 42, 51
TaaI ACNGT 1 cut(s) 76
TasI AATT 2 cut(s) 68, 110
TatI WGTACW 1 cut(s) 151
TfiI GAWTC 2 cut(s) 185, 226
TscAI CASTG 2 cut(s) 79, 106
TspDTI ATGAA 3 cut(s) 192, 236, 295
TspRI CASTG 2 cut(s) 79, 106
XapI RAATTY 1 cut(s) 68
XbaI TCTAGA 1 cut(s) 5
XspI CTAG 3 cut(s) 6, 42, 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.