Rmu_sc0016916.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016916.1
Physical Location & Seq
Forward (+)
27 .. 554
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016916.1_g000001.1.cds

Sequence Viewer

Length: 528 bp
atgctcagagctgagaagctctatgatctttacaaagaagctgagaattgtgaaagtcctgaacgattagaaaacctaatcgaggaaatgaaagaattcaaatgcagaaagacaagaaaagtctttccttaccaagatgttgaaatggaagaaggaggaagctccagaactttcataaaaaaagaaacaagggaaatgaaactcccagttcagaaagcccccacgggtaaaaaaggagaaagaaattctcaaagattcgtccccgaggacaatctgcccagagttcctatcaccaactatggaatctggctgaatctagacaagagtctagacaaaagaaaaaccattgaccaatgggtagacagcctgatgatggcctctgcacttacccttggcaaatttgaagcaccagatttgcaggtgtactatgaaactactctcaccggagtggcaaaaaagtactacctatccttcaaagaaactgccagaggaagagactggcccaattcagaaagcccccacgggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

20.47

Weight (kDa)

8.39

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 409
Acc36I ACCTGC 1 cut(s) 409
AccI GTMKAC 1 cut(s) 360
AcsI RAATTY 3 cut(s) 95, 244, 398
AfaI GTAC 2 cut(s) 425, 461
AfiI CCNNNNNNNGG 2 cut(s) 82, 373
AgsI TTSAA 4 cut(s) 100, 143, 404, 475
AleI CACNNNNGTG 1 cut(s) 446
AluBI AGCT 4 cut(s) 11, 19, 41, 162
AluI AGCT 4 cut(s) 11, 19, 41, 162
Alw26I GTCTC 1 cut(s) 489
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 2 cut(s) 375, 500
ApoI RAATTY 3 cut(s) 95, 244, 398
Asp700I GAANNNNTTC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 501
AsuHPI GGTGA 2 cut(s) 283, 433
AvaI CYCGRG 1 cut(s) 263
BccI CCATC 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 489
BfaI CTAG 2 cut(s) 317, 329
BfuAI ACCTGC 1 cut(s) 409
BmcAI AGTACT 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 501
BmrI ACTGGG 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 200
BoxI GACNNNNGTC 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 148
BsaJI CCNNGG 4 cut(s) 222, 264, 391, 520
BsaWI WCCGGW 1 cut(s) 443
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 373
Bse1I ACTGG 2 cut(s) 206, 503
BseDI CCNNGG 4 cut(s) 222, 264, 391, 520
BseLI CCNNNNNNNGG 2 cut(s) 82, 373
BseMII CTCAG 2 cut(s) 19, 33
BseNI ACTGG 2 cut(s) 206, 503
BsgI GTGCAG 1 cut(s) 366
BshFI GGCC 2 cut(s) 377, 502
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 1 cut(s) 444
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 82, 373
BsmAI GTCTC 1 cut(s) 489
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 2 cut(s) 377, 502
BsoBI CYCGRG 1 cut(s) 263
Bsp143I GATC 1 cut(s) 25
BspANI GGCC 2 cut(s) 377, 502
BspCNI CTCAG 3 cut(s) 4, 18, 34
BspMI ACCTGC 1 cut(s) 409
BsrI ACTGG 2 cut(s) 206, 503
BssECI CCNNGG 4 cut(s) 222, 264, 391, 520
BssMI GATC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 391
Bst6I CTCTTC 1 cut(s) 487
BstDEI CTNAG 3 cut(s) 5, 12, 42
BstDSI CCRYGG 2 cut(s) 222, 520
BstENI CCTNNNNNAGG 1 cut(s) 80
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 489
BstMBI GATC 1 cut(s) 25
BstPAI GACNNNNGTC 1 cut(s) 324
BsuRI GGCC 2 cut(s) 377, 502
BtgI CCRYGG 2 cut(s) 222, 520
BveI ACCTGC 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 501
Csp6I GTAC 2 cut(s) 424, 460
CviQI GTAC 2 cut(s) 424, 460
DdeI CTNAG 3 cut(s) 5, 12, 42
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 487
EarI CTCTTC 1 cut(s) 487
Eco130I CCWWGG 1 cut(s) 391
Eco88I CYCGRG 1 cut(s) 263
EcoNI CCTNNNNNAGG 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 391
FaiI YATR 4 cut(s) 24, 176, 300, 429
FaqI GGGAC 1 cut(s) 245
FblI GTMKAC 1 cut(s) 360
FspBI CTAG 2 cut(s) 317, 329
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 2 cut(s) 377, 502
HapII CCGG 1 cut(s) 444
HinfI GANTC 4 cut(s) 255, 303, 313, 325
HpaII CCGG 1 cut(s) 444
HphI GGTGA 2 cut(s) 283, 433
Hpy166II GTNNAC 2 cut(s) 361, 424
Hpy188I TCNGA 3 cut(s) 8, 213, 511
Hpy188III TCNNGA 4 cut(s) 59, 165, 317, 329
Hpy8I GTNNAC 2 cut(s) 361, 424
HpyAV CCTTC 2 cut(s) 146, 481
HpyCH4V TGCA 3 cut(s) 105, 383, 418
HpyF3I CTNAG 3 cut(s) 5, 12, 42
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 167
MaeI CTAG 2 cut(s) 317, 329
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 2 cut(s) 161, 504
MluCI AATT 5 cut(s) 46, 95, 244, 398, 505
MlyI GAGTC 1 cut(s) 334
MnlI CCTC 5 cut(s) 76, 149, 259, 388, 482
MroXI GAANNNNTTC 1 cut(s) 95
MslI CAYNNNNRTG 1 cut(s) 446
MspI CCGG 1 cut(s) 444
NdeII GATC 1 cut(s) 25
OliI CACNNNNGTG 1 cut(s) 446
PaqCI CACCTGC 1 cut(s) 409
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 3 cut(s) 255, 303, 313
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
PshAI GACNNNNGTC 1 cut(s) 324
PspPI GGNCC 1 cut(s) 501
RsaI GTAC 2 cut(s) 425, 461
RsaNI GTAC 2 cut(s) 424, 460
RseI CAYNNNNRTG 1 cut(s) 446
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 1 cut(s) 501
ScaI AGTACT 1 cut(s) 461
SchI GAGTC 1 cut(s) 334
SetI ASST 7 cut(s) 13, 21, 43, 78, 164, 423, 468
SmiMI CAYNNNNRTG 1 cut(s) 446
Sse9I AATT 5 cut(s) 46, 95, 244, 398, 505
SspMI CTAG 2 cut(s) 317, 329
StyI CCWWGG 1 cut(s) 391
TaqI TCGA 1 cut(s) 81
TasI AATT 5 cut(s) 46, 95, 244, 398, 505
TatI WGTACW 2 cut(s) 423, 459
TfiI GAWTC 3 cut(s) 255, 303, 313
TspDTI ATGAA 4 cut(s) 104, 163, 212, 444
XagI CCTNNNNNAGG 1 cut(s) 80
XapI RAATTY 3 cut(s) 95, 244, 398
XbaI TCTAGA 2 cut(s) 316, 328
XmiI GTMKAC 1 cut(s) 360
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 2 cut(s) 317, 329
ZrmI AGTACT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.