Rmu_sc0003386.1_g000006

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003386.1
OG0000976
Physical Location & Seq
Reverse (-)
16751 .. 19333
2583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003386.1_g000006.1.cds

Sequence Viewer

Length: 1500 bp
atgttgggaactctagaagcatcactgtgcaaccaagtagcatatttcaactgcttccccaacttcaccaccagcttgaaagatgcagcccactgcctcagactgagagtcaagacagatgagatatttatgaaaaaagaaatgcaagaactagcgataatataccgagtgtactataaactgatgagcaccacactagagccgaagacacggatctccaacatccctggtctcactactggattcctcaccagccagaagaaccattcacagcagattcacaaggttgcttggaatgaagtaacttttcctcttgaatggaaactatccggtccaaaaaagctaccggaaagagcaaaagcaaagatctacgagagtagaagaactggagaaatcagcctcaacttcgacaatcacagaaaaagtgatgtctgtcctgagaacatcaggataaacagcagtcttctgagaagaagctacagcactagagaagctagtgtcagtggaacaaagcccactattgaagagccaatatcagaagaagatctggaagctgatctatgcagaccagtcaacatgctcagagctgagaagctctatgatctttatgaagaagctgagaattgtgaaagtcctgaacgattagcaaaactaatcgaagagatgaaagaatacaaattcagaaagacgagaaaagtctttccatatcaagatattgaaatggaagatgaagaaagctccagaactttcatcaaaaaaaaaacaagggaaacgacgagaaaagtctttccttatcaagatattgaaatggaagatggagaaagctccagaactttcataaaaagagaaacaagggaaacaaaactcccattccagaaagcccccacggatgatgacaggtcagtctactctgcctggtctgaagaagaagaaacttcatcagaagagtctgagattgattctgaagtagagtacttcaaatccagacaaatgaatgttctacgaatcaagaactgggaagaaagcaagacagaatccttcatgtcttcttatcaggtgaaccctggtacattcgtttgtgactactgcttctgtcacgaaaagaatggtctcccaatgttttgtgtagagtctaagaagacctatcacaaagaatgcttcatagttgaagcaagaagaaaaaccaagaatggtcttgtcagccagttggaaaccatggaaccatcttcctcgaaaaaggaagaaatcatcgatgaagaaaaaatcgatgaggatattgaactgattgaaataccagaaaatgttgaactggtgaaaccaccagaaactgttcatctcttagaacgacaagaggttgctgaaacatgggatctacttggccaaccatcaggcaagtttgattacaaagtcagatatgatcctccctcctggttcagtgatccagacagcaaagagatagttcctacagattgggatgatagtaaagaatcacccacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

499

Amino Acids

58.47

Weight (kDa)

5.1

Isoelectric Point (pI)

61.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 902
AccI GTMKAC 1 cut(s) 906
AclWI GGATC 4 cut(s) 221, 1377, 1412, 1433
AcoI YGGCCR 1 cut(s) 1378
AcsI RAATTY 1 cut(s) 677
AcuI CTGAAG 2 cut(s) 942, 984
AfaI GTAC 3 cut(s) 173, 974, 1069
AhdI GACNNNNNGTC 1 cut(s) 107
AjnI CCWGG 4 cut(s) 226, 914, 1063, 1427
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 2 cut(s) 236, 1115
AlwI GGATC 4 cut(s) 221, 1377, 1412, 1433
AlwNI CAGNNNCTG 1 cut(s) 1328
AoxI GGCC 1 cut(s) 1378
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 677
Asp700I GAANNNNTTC 1 cut(s) 1329
AspS9I GGNCC 1 cut(s) 332
AsuHPI GGTGA 5 cut(s) 58, 241, 1069, 1324, 1482
AvaII GGWCC 1 cut(s) 332
BaeI ACNNNNGTAYC 2 cut(s) 1059, 1092
BalI TGGCCA 1 cut(s) 1380
BbsI GAAGAC 4 cut(s) 212, 455, 1038, 1145
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 98
BccI CCATC 3 cut(s) 809, 1231, 1393
BciT130I CCWGG 4 cut(s) 228, 916, 1065, 1429
BcoDI GTCTC 2 cut(s) 236, 1115
BfaI CTAG 5 cut(s) 14, 152, 197, 486, 495
BfmI CTRYAG 2 cut(s) 478, 1464
BglII AGATCT 2 cut(s) 366, 544
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmcAI AGTACT 1 cut(s) 974
Bme1390I CCNGG 4 cut(s) 228, 916, 1065, 1429
Bme18I GGWCC 1 cut(s) 332
BmeRI GACNNNNNGTC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 332
BmiI GGNNCC 1 cut(s) 1221
BmrFI CCNGG 4 cut(s) 228, 916, 1065, 1429
BmrI ACTGGG 1 cut(s) 1024
BmsI GCATC 2 cut(s) 29, 73
BmuI ACTGGG 1 cut(s) 1024
BpiI GAAGAC 4 cut(s) 212, 455, 1038, 1145
BpmI CTGGAG 3 cut(s) 408, 724, 811
Bsa29I ATCGAT 2 cut(s) 1251, 1266
BsaI GGTCTC 2 cut(s) 236, 1115
BsaJI CCNNGG 4 cut(s) 226, 885, 1063, 1215
BsaWI WCCGGW 2 cut(s) 329, 346
Bse1I ACTGG 6 cut(s) 244, 391, 569, 1019, 1204, 1314
BseBI CCWGG 4 cut(s) 228, 916, 1065, 1429
BseCI ATCGAT 2 cut(s) 1251, 1266
BseDI CCNNGG 4 cut(s) 226, 885, 1063, 1215
BseGI GGATG 3 cut(s) 222, 895, 1480
BseMII CTCAG 8 cut(s) 95, 112, 429, 458, 579, 595, 609, 942
BseNI ACTGG 6 cut(s) 244, 391, 569, 1019, 1204, 1314
BseXI GCAGC 1 cut(s) 98
BshFI GGCC 1 cut(s) 1380
BshVI ATCGAT 2 cut(s) 1251, 1266
BsiHKAI GWGCWC 1 cut(s) 191
BsiSI CCGG 2 cut(s) 330, 347
BsmAI GTCTC 2 cut(s) 236, 1115
BsmI GAATGC 1 cut(s) 1160
BsnI GGCC 1 cut(s) 1380
Bso31I GGTCTC 2 cut(s) 236, 1115
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 8 cut(s) 213, 366, 544, 556, 601, 1369, 1417, 1438
Bsp19I CCATGG 1 cut(s) 1215
BspANI GGCC 1 cut(s) 1380
BspCNI CTCAG 8 cut(s) 96, 111, 430, 459, 580, 594, 610, 943
BspDI ATCGAT 2 cut(s) 1251, 1266
BspLI GGNNCC 1 cut(s) 1221
BspPI GGATC 4 cut(s) 221, 1377, 1412, 1433
BspQI GCTCTTC 1 cut(s) 519
BspTNI GGTCTC 2 cut(s) 236, 1115
BsrI ACTGG 6 cut(s) 244, 391, 569, 1019, 1204, 1314
BssECI CCNNGG 4 cut(s) 226, 885, 1063, 1215
BssMI GATC 8 cut(s) 213, 366, 544, 556, 601, 1369, 1417, 1438
BssT1I CCWWGG 1 cut(s) 1215
Bst2UI CCWGG 4 cut(s) 228, 916, 1065, 1429
Bst4CI ACNGT 2 cut(s) 27, 1330
Bst6I CTCTTC 3 cut(s) 519, 654, 939
BstDSI CCRYGG 2 cut(s) 885, 1215
BstF5I GGATG 3 cut(s) 222, 895, 1480
BstKTI GATC 8 cut(s) 216, 369, 547, 559, 604, 1372, 1420, 1441
BstMAI GTCTC 2 cut(s) 236, 1115
BstMBI GATC 8 cut(s) 213, 366, 544, 556, 601, 1369, 1417, 1438
BstNI CCWGG 4 cut(s) 228, 916, 1065, 1429
BstNSI RCATGY 1 cut(s) 580
BstSCI CCNGG 4 cut(s) 226, 914, 1063, 1427
BstSFI CTRYAG 2 cut(s) 478, 1464
BstV1I GCAGC 1 cut(s) 98
BstV2I GAAGAC 4 cut(s) 212, 455, 1038, 1145
BstX2I RGATCY 4 cut(s) 213, 366, 544, 1369
BstYI RGATCY 4 cut(s) 213, 366, 544, 1369
Bsu15I ATCGAT 2 cut(s) 1251, 1266
BsuRI GGCC 1 cut(s) 1380
BsuTUI ATCGAT 2 cut(s) 1251, 1266
BtgI CCRYGG 2 cut(s) 885, 1215
BtsCI GGATG 3 cut(s) 222, 895, 1480
BtsI GCAGTG 1 cut(s) 91
BtsIMutI CAGTG 4 cut(s) 23, 91, 508, 1441
CaiI CAGNNNCTG 1 cut(s) 1328
Cfr13I GGNCC 1 cut(s) 332
ClaI ATCGAT 2 cut(s) 1251, 1266
Csp6I GTAC 3 cut(s) 172, 973, 1068
CviAII CATG 4 cut(s) 577, 1042, 1216, 1365
CviQI GTAC 3 cut(s) 172, 973, 1068
DpnI GATC 8 cut(s) 215, 368, 546, 558, 603, 1371, 1419, 1440
DpnII GATC 8 cut(s) 213, 366, 544, 556, 601, 1369, 1417, 1438
DrdI GACNNNNNNGTC 1 cut(s) 902
DriI GACNNNNNGTC 1 cut(s) 107
DseDI GACNNNNNNGTC 1 cut(s) 902
EaeI YGGCCR 1 cut(s) 1378
Eam1104I CTCTTC 3 cut(s) 519, 654, 939
Eam1105I GACNNNNNGTC 1 cut(s) 107
EarI CTCTTC 3 cut(s) 519, 654, 939
Eco130I CCWWGG 1 cut(s) 1215
Eco31I GGTCTC 2 cut(s) 236, 1115
Eco47I GGWCC 1 cut(s) 332
Eco57I CTGAAG 2 cut(s) 942, 984
EcoRII CCWGG 4 cut(s) 226, 914, 1063, 1427
EcoT14I CCWWGG 1 cut(s) 1215
ErhI CCWWGG 1 cut(s) 1215
FaeI CATG 4 cut(s) 580, 1045, 1219, 1368
FatI CATG 4 cut(s) 576, 1041, 1215, 1364
FblI GTMKAC 1 cut(s) 906
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 3 cut(s) 209, 902, 1487
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 5 cut(s) 14, 152, 197, 486, 495
GluI GCNGC 1 cut(s) 87
GsuI CTGGAG 3 cut(s) 408, 724, 811
HaeIII GGCC 1 cut(s) 1380
HapII CCGG 2 cut(s) 330, 347
Hin1II CATG 4 cut(s) 580, 1045, 1219, 1368
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 9 cut(s) 108, 243, 277, 947, 959, 1005, 1034, 1130, 1487
HpaII CCGG 2 cut(s) 330, 347
HphI GGTGA 5 cut(s) 58, 241, 1069, 1324, 1482
Hpy166II GTNNAC 4 cut(s) 172, 574, 907, 1060
Hpy8I GTNNAC 4 cut(s) 172, 574, 907, 1060
Hpy99I CGWCG 1 cut(s) 778
HpyAV CCTTC 1 cut(s) 1048
HpyCH4III ACNGT 2 cut(s) 27, 1330
HpyCH4V TGCA 4 cut(s) 30, 86, 145, 564
Hsp92II CATG 4 cut(s) 580, 1045, 1219, 1368
Kzo9I GATC 8 cut(s) 213, 366, 544, 556, 601, 1369, 1417, 1438
LguI GCTCTTC 1 cut(s) 519
LmnI GCTCC 2 cut(s) 743, 830
Lsp1109I GCAGC 1 cut(s) 98
LweI GCATC 2 cut(s) 29, 73
MaeI CTAG 5 cut(s) 14, 152, 197, 486, 495
MaeIII GTNAC 3 cut(s) 301, 1079, 1094
MalI GATC 8 cut(s) 215, 368, 546, 558, 603, 1371, 1419, 1440
MboI GATC 8 cut(s) 213, 366, 544, 556, 601, 1369, 1417, 1438
MflI RGATCY 4 cut(s) 213, 366, 544, 1369
MhlI GDGCHC 1 cut(s) 191
MlsI TGGCCA 1 cut(s) 1380
MluCI AATT 2 cut(s) 622, 677
MluNI TGGCCA 1 cut(s) 1380
MlyI GAGTC 3 cut(s) 117, 956, 1139
MmeI TCCRAC 2 cut(s) 243, 1188
MnlI CCTC 9 cut(s) 107, 257, 321, 410, 1240, 1264, 1345, 1431, 1435
Mox20I TGGCCA 1 cut(s) 1380
MroXI GAANNNNTTC 1 cut(s) 1329
MscI TGGCCA 1 cut(s) 1380
MslI CAYNNNNRTG 1 cut(s) 25
Msp20I TGGCCA 1 cut(s) 1380
MspI CCGG 2 cut(s) 330, 347
MspR9I CCNGG 4 cut(s) 228, 916, 1065, 1429
Mva1269I GAATGC 1 cut(s) 1160
MvaI CCWGG 4 cut(s) 228, 916, 1065, 1429
NcoI CCATGG 1 cut(s) 1215
NdeII GATC 8 cut(s) 213, 366, 544, 556, 601, 1369, 1417, 1438
NlaIII CATG 4 cut(s) 580, 1045, 1219, 1368
NlaIV GGNNCC 1 cut(s) 1221
NmuCI GTSAC 2 cut(s) 1079, 1094
NspI RCATGY 1 cut(s) 580
PciSI GCTCTTC 1 cut(s) 519
PctI GAATGC 1 cut(s) 1160
PdmI GAANNNNTTC 1 cut(s) 1329
PfeI GAWTC 6 cut(s) 243, 277, 959, 1005, 1034, 1487
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 3 cut(s) 116, 955, 1138
PpsI GAGTC 3 cut(s) 116, 955, 1138
Psp6I CCWGG 4 cut(s) 226, 914, 1063, 1427
PspGI CCWGG 4 cut(s) 226, 914, 1063, 1427
PspN4I GGNNCC 1 cut(s) 1221
PspPI GGNCC 1 cut(s) 332
PstNI CAGNNNCTG 1 cut(s) 1328
PsuI RGATCY 4 cut(s) 213, 366, 544, 1369
RsaI GTAC 3 cut(s) 173, 974, 1069
RsaNI GTAC 3 cut(s) 172, 973, 1068
RseI CAYNNNNRTG 1 cut(s) 25
SapI GCTCTTC 1 cut(s) 519
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 8 cut(s) 213, 366, 544, 556, 601, 1369, 1417, 1438
Sau96I GGNCC 1 cut(s) 332
ScaI AGTACT 1 cut(s) 974
SchI GAGTC 3 cut(s) 117, 956, 1139
ScrFI CCNGG 4 cut(s) 228, 916, 1065, 1429
SduI GDGCHC 1 cut(s) 191
SfaNI GCATC 2 cut(s) 29, 73
SfcI CTRYAG 2 cut(s) 478, 1464
SinI GGWCC 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 25
Sse9I AATT 2 cut(s) 622, 677
SspMI CTAG 5 cut(s) 14, 152, 197, 486, 495
StyD4I CCNGG 4 cut(s) 226, 914, 1063, 1427
StyI CCWWGG 1 cut(s) 1215
TaaI ACNGT 2 cut(s) 27, 1330
TaqI TCGA 5 cut(s) 408, 657, 1232, 1251, 1266
TasI AATT 2 cut(s) 622, 677
TatI WGTACW 2 cut(s) 171, 972
TfiI GAWTC 6 cut(s) 243, 277, 959, 1005, 1034, 1487
TscAI CASTG 4 cut(s) 30, 98, 508, 1441
TseFI GTSAC 2 cut(s) 1079, 1094
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 2 cut(s) 1079, 1094
TspGWI ACGGA 2 cut(s) 226, 902
TspRI CASTG 4 cut(s) 30, 98, 508, 1441
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 1 cut(s) 677
XbaI TCTAGA 1 cut(s) 13
XceI RCATGY 1 cut(s) 580
XmiI GTMKAC 1 cut(s) 906
XmnI GAANNNNTTC 1 cut(s) 1329
XspI CTAG 5 cut(s) 14, 152, 197, 486, 495
ZrmI AGTACT 1 cut(s) 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.