Rmu_sc0024220.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024220.1
OG0000976
Physical Location & Seq
Reverse (-)
1 .. 984
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024220.1_g000001.1.cds

Sequence Viewer

Length: 977 bp
atgaaagaagaaatgcaagaattggcaatagtatacagagtgtactataaactgatgagcaccacagtggaaccaaagacaaggatctccaacatccctggtctcactactggattcctcaccagccagaagaaccattcacagcagattcacaaggttgcttggaatgaagtaacttttcctcttgaatggaaattatccggtccaaaaaagctgccggaaagagcaaaagcaaagatctacgagagtagacgcactggagaaatcagcctcaacttcgacaatcacagaaaaagtgatgtttgtcctgagaacatcaggataaacagcagtcttctgagaagaagctacagcaccagagaagccggtgtcagtggtacaaaacccactattgaagagccattatcagaagaagatctggaagctgatctatgcagaccagtccatatgctcagagctgagaggctctatgatctttacaaagaagctgagaattgtgaaagtcctgaacgattagaaaaactaatcgaggaaatgaaagaattcaaatgcagaaagacaagaaaagtctttccttaccaagatgttgaaatggaagaaggaggaagctccagaactttcataaaaaaagaaacaagggaaatgaaactcccagttcagaaagcccctacgggtaaaaaaggagaaagaaattctcaaagattcgtccccgaggacaatttgcccagagttcctatcaccaactatggaatctggctaaatctagacaagagtctagacaaaagaaaaaccattgaccaatgggtagatagcctgatgatggcgtctgcactcacccttggcaaatttgaagcaccagatttgcagatgtactatgaaactactctcactggagtggcaaagaagtactacctatctttcaaagaaactgccagaggaagagactggcttgaagagataaaaaattcaaagtctcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

326

Amino Acids

37.99

Weight (kDa)

8.98

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 33, 250
AclWI GGATC 1 cut(s) 92
AcsI RAATTY 4 cut(s) 542, 691, 845, 964
AcyI GRCGYC 1 cut(s) 824
AfaI GTAC 4 cut(s) 44, 379, 872, 908
AfiI CCNNNNNNNGG 1 cut(s) 820
AgsI TTSAA 8 cut(s) 188, 395, 547, 590, 851, 922, 953, 969
AjnI CCWGG 1 cut(s) 97
AleI CACNNNNGTG 2 cut(s) 65, 893
AluBI AGCT 6 cut(s) 214, 348, 425, 458, 488, 609
AluI AGCT 6 cut(s) 214, 348, 425, 458, 488, 609
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 107, 936
AlwI GGATC 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 710
ApeKI GCWGC 1 cut(s) 214
ApoI RAATTY 4 cut(s) 542, 691, 845, 964
Asp700I GAANNNNTTC 1 cut(s) 542
AspS9I GGNCC 1 cut(s) 203
AsuHPI GGTGA 3 cut(s) 112, 730, 826
AvaI CYCGRG 1 cut(s) 710
AvaII GGWCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 201
BccI CCATC 1 cut(s) 814
BciT130I CCWGG 1 cut(s) 99
BcoDI GTCTC 2 cut(s) 107, 936
BfaI CTAG 2 cut(s) 764, 776
BfmI CTRYAG 1 cut(s) 349
BglII AGATCT 2 cut(s) 237, 415
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
BmcAI AGTACT 1 cut(s) 908
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 203
BmeT110I CYCGRG 1 cut(s) 710
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 99
BmrI ACTGGG 1 cut(s) 647
BmuI ACTGGG 1 cut(s) 647
BoxI GACNNNNGTC 1 cut(s) 771
BpiI GAAGAC 1 cut(s) 326
BpmI CTGGAG 3 cut(s) 279, 595, 912
BsaHI GRCGYC 1 cut(s) 824
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 97, 711, 838
BsaWI WCCGGW 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 820
Bse118I RCCGGY 1 cut(s) 365
Bse1I ACTGG 6 cut(s) 115, 262, 440, 653, 895, 950
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 3 cut(s) 97, 711, 838
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 820
BseMII CTCAG 5 cut(s) 300, 329, 450, 466, 480
BseNI ACTGG 6 cut(s) 115, 262, 440, 653, 895, 950
BseXI GCAGC 1 cut(s) 201
BsgI GTGCAG 1 cut(s) 813
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 710
BsiSI CCGG 3 cut(s) 201, 218, 366
BslFI GGGAC 1 cut(s) 692
BslI CCNNNNNNNGG 1 cut(s) 820
BsmAI GTCTC 2 cut(s) 107, 936
BsmFI GGGAC 1 cut(s) 692
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 710
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 5 cut(s) 84, 237, 415, 427, 472
BspCNI CTCAG 5 cut(s) 301, 330, 451, 465, 481
BspLI GGNNCC 1 cut(s) 72
BspPI GGATC 1 cut(s) 92
BspQI GCTCTTC 1 cut(s) 390
BspTNI GGTCTC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 365
BsrI ACTGG 6 cut(s) 115, 262, 440, 653, 895, 950
BssAI RCCGGY 1 cut(s) 365
BssECI CCNNGG 3 cut(s) 97, 711, 838
BssMI GATC 5 cut(s) 84, 237, 415, 427, 472
BssNAI GTATAC 1 cut(s) 34
BssNI GRCGYC 1 cut(s) 824
BssT1I CCWWGG 1 cut(s) 838
Bst1107I GTATAC 1 cut(s) 34
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 3 cut(s) 390, 934, 948
BstACI GRCGYC 1 cut(s) 824
BstDEI CTNAG 5 cut(s) 309, 338, 452, 459, 489
BstF5I GGATG 1 cut(s) 93
BstKTI GATC 5 cut(s) 87, 240, 418, 430, 475
BstMAI GTCTC 2 cut(s) 107, 936
BstMBI GATC 5 cut(s) 84, 237, 415, 427, 472
BstNI CCWGG 1 cut(s) 99
BstPAI GACNNNNGTC 1 cut(s) 771
BstSCI CCNGG 1 cut(s) 97
BstSFI CTRYAG 1 cut(s) 349
BstV1I GCAGC 1 cut(s) 201
BstV2I GAAGAC 1 cut(s) 326
BstX2I RGATCY 3 cut(s) 84, 237, 415
BstYI RGATCY 3 cut(s) 84, 237, 415
BstZ17I GTATAC 1 cut(s) 34
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 4 cut(s) 72, 255, 379, 888
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 203
CseI GACGC 2 cut(s) 261, 813
Csp6I GTAC 4 cut(s) 43, 378, 871, 907
CviQI GTAC 4 cut(s) 43, 378, 871, 907
DdeI CTNAG 5 cut(s) 309, 338, 452, 459, 489
DpnI GATC 5 cut(s) 86, 239, 417, 429, 474
DpnII GATC 5 cut(s) 84, 237, 415, 427, 472
Eam1104I CTCTTC 3 cut(s) 390, 934, 948
EarI CTCTTC 3 cut(s) 390, 934, 948
Eco130I CCWWGG 1 cut(s) 838
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 710
EcoRI GAATTC 1 cut(s) 542
EcoRII CCWGG 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 838
ErhI CCWWGG 1 cut(s) 838
FaiI YATR 9 cut(s) 34, 48, 433, 447, 449, 471, 623, 747, 876
FaqI GGGAC 1 cut(s) 692
FauNDI CATATG 1 cut(s) 447
FblI GTMKAC 2 cut(s) 33, 250
Fnu4HI GCNGC 1 cut(s) 215
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 2 cut(s) 764, 776
GluI GCNGC 1 cut(s) 215
GsuI CTGGAG 3 cut(s) 279, 595, 912
HapII CCGG 3 cut(s) 201, 218, 366
HgaI GACGC 2 cut(s) 261, 813
Hin1I GRCGYC 1 cut(s) 824
HinfI GANTC 5 cut(s) 114, 148, 702, 750, 772
HpaII CCGG 3 cut(s) 201, 218, 366
HphI GGTGA 3 cut(s) 112, 730, 826
Hpy166II GTNNAC 3 cut(s) 34, 43, 251
Hpy188I TCNGA 4 cut(s) 339, 409, 455, 660
Hpy188III TCNNGA 8 cut(s) 185, 308, 319, 419, 506, 612, 764, 776
Hpy8I GTNNAC 3 cut(s) 34, 43, 251
HpyAV CCTTC 1 cut(s) 593
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 5 cut(s) 16, 435, 552, 830, 865
HpyF3I CTNAG 5 cut(s) 309, 338, 452, 459, 489
Hsp92I GRCGYC 1 cut(s) 824
Kzo9I GATC 5 cut(s) 84, 237, 415, 427, 472
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 1 cut(s) 614
Lsp1109I GCAGC 1 cut(s) 201
MaeI CTAG 2 cut(s) 764, 776
MaeIII GTNAC 1 cut(s) 172
MalI GATC 5 cut(s) 86, 239, 417, 429, 474
MboI GATC 5 cut(s) 84, 237, 415, 427, 472
MflI RGATCY 3 cut(s) 84, 237, 415
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 8 cut(s) 20, 194, 493, 542, 691, 718, 845, 964
MlyI GAGTC 1 cut(s) 781
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 8 cut(s) 128, 192, 281, 456, 523, 596, 706, 929
MroXI GAANNNNTTC 1 cut(s) 542
MslI CAYNNNNRTG 2 cut(s) 65, 893
MspI CCGG 3 cut(s) 201, 218, 366
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
NdeI CATATG 1 cut(s) 447
NdeII GATC 5 cut(s) 84, 237, 415, 427, 472
NlaIV GGNNCC 1 cut(s) 72
OliI CACNNNNGTG 2 cut(s) 65, 893
PciSI GCTCTTC 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 542
PfeI GAWTC 4 cut(s) 114, 148, 702, 750
PkrI GCNGC 1 cut(s) 216
PleI GAGTC 1 cut(s) 780
PpsI GAGTC 1 cut(s) 780
PshAI GACNNNNGTC 1 cut(s) 771
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 203
PsuI RGATCY 3 cut(s) 84, 237, 415
RsaI GTAC 4 cut(s) 44, 379, 872, 908
RsaNI GTAC 4 cut(s) 43, 378, 871, 907
RseI CAYNNNNRTG 2 cut(s) 65, 893
SapI GCTCTTC 1 cut(s) 390
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 5 cut(s) 84, 237, 415, 427, 472
Sau96I GGNCC 1 cut(s) 203
ScaI AGTACT 1 cut(s) 908
SchI GAGTC 1 cut(s) 781
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 62
SetI ASST 8 cut(s) 159, 216, 350, 427, 460, 490, 611, 915
SfcI CTRYAG 1 cut(s) 349
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 65, 893
Sse9I AATT 8 cut(s) 20, 194, 493, 542, 691, 718, 845, 964
SspMI CTAG 2 cut(s) 764, 776
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 1 cut(s) 838
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 2 cut(s) 279, 528
TasI AATT 8 cut(s) 20, 194, 493, 542, 691, 718, 845, 964
TatI WGTACW 3 cut(s) 42, 870, 906
TfiI GAWTC 4 cut(s) 114, 148, 702, 750
TscAI CASTG 4 cut(s) 72, 262, 379, 895
TseI GCWGC 1 cut(s) 214
TspDTI ATGAA 6 cut(s) 17, 183, 551, 610, 659, 891
TspRI CASTG 4 cut(s) 72, 262, 379, 895
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 4 cut(s) 542, 691, 845, 964
XbaI TCTAGA 2 cut(s) 763, 775
XmiI GTMKAC 2 cut(s) 33, 250
XmnI GAANNNNTTC 1 cut(s) 542
XspI CTAG 2 cut(s) 764, 776
ZrmI AGTACT 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.