Rmu_sc0001694.1_g000007

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001694.1
OG0000976
Physical Location & Seq
Forward (+)
54671 .. 58131
3461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001694.1_g000007.1.cds

Sequence Viewer

Length: 1176 bp
atgctgctgcaggtcggaggcaggctgatcggaggcttgggctgctgcagggacgcaaaggcaggtgggctggtgcgcgggggacggaggtgttggcgtcgccggccgggctgggctgctgcaggtaggtcgagctcgggtcggatgtgcaggggctgcggttgtgcgaggtttgcgggggagcgtcgccggccgggctgggctgttgcaggcaggtcgactggagtgcagcttggaggtgcaggtgggtgcgactggttcggcaggaggccgggctgcagttcggaggccgcatccttatgcgatcaagtagcatatttcaactgctttccaaacttcaccaccagcttgaaagatgcagctcactgtctacgactgagagtcaagacagatggcatatccatgaaagaagatatgcaagaacttgcaatagtatatagaatatactataaattgacgagcactacagtagctcctaagaccagaataacaaatattccgggtcttactactagtttcctcaccaatcagaagaaccattcacaacagattcataaagttacttggaatgaagtaacttttccgcttgaatggaaattatccggtccaaaaaagctactggaaagagcgaaagcaaaaatttatgaaagcagaaagactggagaaatcagtctcaattttgacaatcacagaaaaagtgatgtctgtcctgagaacctcaggataaacaagaatcttctcagaagaagctacaacactagagaagctagtgttagtggtacaaaacccactattgaagaaccaatatctgaagaagaattggaagctgatctaaacagatcagtccatatgttcagaccagagaggctctatgaactctatgaagaagcagaatcttgcgaaaatcctgaacgattagaaaaactaattgaagaaatgaaagaattcaaaatcagaaagacgagaaaagtctttccttaccaagatatagaaatggaagaaggagaaagctccagaactttcattagcagagaaaaagggaaatcaaaactcccacttcagaaagcccccactgccagaggaagagactggctagaagaaatcaaaaattcaaaatctccgtatgattttgcagtaccccttatgattagttctgtggagatctctcaaatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

391

Amino Acids

44.29

Weight (kDa)

9.45

Isoelectric Point (pI)

55.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 53, 233
Acc36I ACCTGC 4 cut(s) 53, 113, 204, 233
AccI GTMKAC 2 cut(s) 218, 370
AccII CGCG 1 cut(s) 78
AciI CCGC 5 cut(s) 78, 159, 176, 291, 584
AcoI YGGCCR 2 cut(s) 104, 191
AcsI RAATTY 3 cut(s) 639, 944, 1108
AcuI CTGAAG 2 cut(s) 831, 1043
AcyI GRCGYC 1 cut(s) 97
AfaI GTAC 2 cut(s) 781, 1137
AgsI TTSAA 7 cut(s) 322, 352, 590, 797, 932, 949, 1113
AhdI GACNNNNNGTC 1 cut(s) 380
AhlI ACTAGT 1 cut(s) 512
Alw21I GWGCWC 2 cut(s) 137, 464
Alw26I GTCTC 2 cut(s) 677, 1080
AlwNI CAGNNNCTG 1 cut(s) 156
Ama87I CYCGRG 1 cut(s) 136
AoxI GGCC 4 cut(s) 104, 191, 269, 288
ApoI RAATTY 3 cut(s) 639, 944, 1108
Asp700I GAANNNNTTC 1 cut(s) 944
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 605
AsuC2I CCSGG 4 cut(s) 108, 195, 273, 501
AsuHPI GGTGA 2 cut(s) 331, 514
AvaI CYCGRG 1 cut(s) 136
AvaII GGWCC 1 cut(s) 605
AxyI CCTNAGG 1 cut(s) 719
BanII GRGCYC 1 cut(s) 137
Bbv12I GWGCWC 2 cut(s) 137, 464
BbvI GCAGC 8 cut(s) 29, 32, 103, 106, 143, 241, 263, 371
BccI CCATC 1 cut(s) 386
BcgI CGANNNNNNTGC 8 cut(s) 10, 44, 111, 145, 198, 208, 232, 242
BcnI CCSGG 4 cut(s) 108, 195, 273, 501
BcoDI GTCTC 2 cut(s) 677, 1080
BcuI ACTAGT 1 cut(s) 512
BfaI CTAG 4 cut(s) 513, 759, 768, 1094
BfmI CTRYAG 5 cut(s) 8, 46, 120, 277, 465
BfuAI ACCTGC 4 cut(s) 53, 113, 204, 233
BglI GCCNNNNNGGC 2 cut(s) 108, 195
BglII AGATCT 1 cut(s) 1161
Bme1390I CCNGG 4 cut(s) 108, 195, 273, 501
Bme18I GGWCC 1 cut(s) 605
BmeRI GACNNNNNGTC 1 cut(s) 380
BmeT110I CYCGRG 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 605
BmrFI CCNGG 4 cut(s) 108, 195, 273, 501
BmsI GCATC 2 cut(s) 302, 346
BpmI CTGGAG 3 cut(s) 243, 681, 997
BpuMI CCSGG 4 cut(s) 108, 195, 273, 501
BsaHI GRCGYC 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 602
BsaXI ACNNNNNCTCC 2 cut(s) 457, 487
Bse118I RCCGGY 2 cut(s) 102, 189
Bse1I ACTGG 5 cut(s) 226, 260, 624, 664, 1094
Bse21I CCTNAGG 1 cut(s) 719
BseGI GGATG 2 cut(s) 150, 293
BseMII CTCAG 4 cut(s) 368, 702, 733, 754
BseNI ACTGG 5 cut(s) 226, 260, 624, 664, 1094
BseX3I CGGCCG 2 cut(s) 104, 191
BseXI GCAGC 8 cut(s) 29, 32, 103, 106, 143, 241, 263, 371
BseYI CCCAGC 2 cut(s) 111, 198
BsgI GTGCAG 3 cut(s) 169, 248, 261
Bsh1236I CGCG 1 cut(s) 78
Bsh1285I CGRYCG 2 cut(s) 107, 194
BshFI GGCC 4 cut(s) 106, 193, 271, 290
BsiEI CGRYCG 2 cut(s) 107, 194
BsiHKAI GWGCWC 2 cut(s) 137, 464
BsiHKCI CYCGRG 1 cut(s) 136
BsiSI CCGG 7 cut(s) 103, 107, 190, 194, 272, 500, 603
BslFI GGGAC 2 cut(s) 65, 96
BsmAI GTCTC 2 cut(s) 677, 1080
BsmFI GGGAC 2 cut(s) 65, 96
BsnI GGCC 4 cut(s) 106, 193, 271, 290
BsoBI CYCGRG 1 cut(s) 136
Bsp1286I GDGCHC 2 cut(s) 137, 464
Bsp143I GATC 5 cut(s) 27, 304, 829, 839, 1161
BspACI CCGC 5 cut(s) 78, 159, 176, 291, 584
BspANI GGCC 4 cut(s) 106, 193, 271, 290
BspCNI CTCAG 4 cut(s) 369, 703, 732, 753
BspFNI CGCG 1 cut(s) 78
BspMAI CTGCAG 4 cut(s) 12, 50, 124, 281
BspMI ACCTGC 4 cut(s) 53, 113, 204, 233
BsrFI RCCGGY 2 cut(s) 102, 189
BsrI ACTGG 5 cut(s) 226, 260, 624, 664, 1094
BssAI RCCGGY 2 cut(s) 102, 189
BssMI GATC 5 cut(s) 27, 304, 829, 839, 1161
BssNI GRCGYC 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 368, 469
Bst6I CTCTTC 1 cut(s) 1078
BstACI GRCGYC 1 cut(s) 97
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 4 cut(s) 23, 104, 191, 211
BstDEI CTNAG 5 cut(s) 377, 477, 711, 719, 740
BstF5I GGATG 2 cut(s) 150, 293
BstFNI CGCG 1 cut(s) 78
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 5 cut(s) 30, 307, 832, 842, 1164
BstMAI GTCTC 2 cut(s) 677, 1080
BstMBI GATC 5 cut(s) 27, 304, 829, 839, 1161
BstMCI CGRYCG 2 cut(s) 107, 194
BstMWI GCNNNNNNNGC 8 cut(s) 42, 103, 108, 156, 173, 190, 195, 1073
BstSCI CCNGG 4 cut(s) 106, 193, 271, 499
BstSFI CTRYAG 5 cut(s) 8, 46, 120, 277, 465
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 8 cut(s) 29, 32, 103, 106, 143, 241, 263, 371
BstX2I RGATCY 1 cut(s) 1161
BstYI RGATCY 1 cut(s) 1161
BstZI CGGCCG 2 cut(s) 104, 191
Bsu36I CCTNAGG 1 cut(s) 719
BsuRI GGCC 4 cut(s) 106, 193, 271, 290
BtsCI GGATG 2 cut(s) 150, 293
BtsI GCAGTG 1 cut(s) 1071
BtsIMutI CAGTG 2 cut(s) 364, 1071
BveI ACCTGC 4 cut(s) 53, 113, 204, 233
Cac8I GCNNGC 4 cut(s) 23, 104, 191, 211
CaiI CAGNNNCTG 1 cut(s) 156
CfoI GCGC 1 cut(s) 78
Cfr10I RCCGGY 2 cut(s) 102, 189
Cfr13I GGNCC 1 cut(s) 605
CseI GACGC 3 cut(s) 62, 86, 173
Csp6I GTAC 2 cut(s) 780, 1136
CviAII CATG 1 cut(s) 403
CviQI GTAC 2 cut(s) 780, 1136
DdeI CTNAG 5 cut(s) 377, 477, 711, 719, 740
DpnI GATC 5 cut(s) 29, 306, 831, 841, 1163
DpnII GATC 5 cut(s) 27, 304, 829, 839, 1161
DriI GACNNNNNGTC 1 cut(s) 380
EaeI YGGCCR 2 cut(s) 104, 191
EagI CGGCCG 2 cut(s) 104, 191
Eam1104I CTCTTC 1 cut(s) 1078
Eam1105I GACNNNNNGTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 1078
Ecl136II GAGCTC 1 cut(s) 135
EclXI CGGCCG 2 cut(s) 104, 191
Eco24I GRGCYC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 605
Eco52I CGGCCG 2 cut(s) 104, 191
Eco53kI GAGCTC 1 cut(s) 135
Eco57I CTGAAG 2 cut(s) 831, 1043
Eco81I CCTNAGG 1 cut(s) 719
Eco88I CYCGRG 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 944
EcoT38I GRGCYC 1 cut(s) 137
FaeI CATG 1 cut(s) 406
FaqI GGGAC 2 cut(s) 65, 96
FatI CATG 1 cut(s) 402
FauI CCCGC 2 cut(s) 71, 169
FauNDI CATATG 1 cut(s) 849
FblI GTMKAC 2 cut(s) 218, 370
FokI GGATG 2 cut(s) 157, 280
FriOI GRGCYC 1 cut(s) 137
FspBI CTAG 4 cut(s) 513, 759, 768, 1094
GlaI GCGC 1 cut(s) 77
GsaI CCCAGC 2 cut(s) 115, 202
GsuI CTGGAG 3 cut(s) 243, 681, 997
HaeIII GGCC 4 cut(s) 106, 193, 271, 290
HapII CCGG 7 cut(s) 103, 107, 190, 194, 272, 500, 603
HgaI GACGC 3 cut(s) 62, 86, 173
HhaI GCGC 1 cut(s) 78
Hin1I GRCGYC 1 cut(s) 97
Hin1II CATG 1 cut(s) 406
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HinfI GANTC 4 cut(s) 381, 550, 733, 893
HpaII CCGG 7 cut(s) 103, 107, 190, 194, 272, 500, 603
HphI GGTGA 2 cut(s) 331, 514
Hpy166II GTNNAC 2 cut(s) 219, 371
Hpy188III TCNNGA 5 cut(s) 385, 710, 721, 908, 1014
Hpy8I GTNNAC 2 cut(s) 219, 371
Hpy99I CGWCG 2 cut(s) 102, 189
HpyAV CCTTC 1 cut(s) 995
HpyCH4III ACNGT 2 cut(s) 368, 469
HpyF10VI GCNNNNNNNGC 8 cut(s) 42, 103, 108, 156, 173, 190, 195, 1073
HpyF3I CTNAG 5 cut(s) 377, 477, 711, 719, 740
Hsp92I GRCGYC 1 cut(s) 97
Hsp92II CATG 1 cut(s) 406
HspAI GCGC 1 cut(s) 76
KroI GCCGGC 2 cut(s) 102, 189
KroNI GCCGGC 2 cut(s) 104, 191
Kzo9I GATC 5 cut(s) 27, 304, 829, 839, 1161
LmnI GCTCC 3 cut(s) 181, 478, 1016
Lsp1109I GCAGC 8 cut(s) 29, 32, 103, 106, 143, 241, 263, 371
LweI GCATC 2 cut(s) 302, 346
MaeI CTAG 4 cut(s) 513, 759, 768, 1094
MaeIII GTNAC 2 cut(s) 559, 574
MalI GATC 5 cut(s) 29, 306, 831, 841, 1163
MboI GATC 5 cut(s) 27, 304, 829, 839, 1161
MflI RGATCY 1 cut(s) 1161
MhlI GDGCHC 2 cut(s) 137, 464
MluCI AATT 8 cut(s) 452, 596, 639, 676, 818, 927, 944, 1108
MlyI GAGTC 1 cut(s) 390
MmeI TCCRAC 1 cut(s) 122
MroNI GCCGGC 2 cut(s) 102, 189
MroXI GAANNNNTTC 1 cut(s) 944
MslI CAYNNNNRTG 2 cut(s) 298, 401
MspI CCGG 7 cut(s) 103, 107, 190, 194, 272, 500, 603
MspR9I CCNGG 4 cut(s) 108, 195, 273, 501
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 8 cut(s) 42, 103, 108, 156, 173, 190, 195, 1073
NaeI GCCGGC 2 cut(s) 104, 191
NciI CCSGG 4 cut(s) 108, 195, 273, 501
NdeI CATATG 1 cut(s) 849
NdeII GATC 5 cut(s) 27, 304, 829, 839, 1161
NgoMIV GCCGGC 2 cut(s) 102, 189
NlaIII CATG 1 cut(s) 406
PaqCI CACCTGC 2 cut(s) 53, 233
PdiI GCCGGC 2 cut(s) 104, 191
PdmI GAANNNNTTC 1 cut(s) 944
PfeI GAWTC 3 cut(s) 550, 733, 893
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
Psp124BI GAGCTC 1 cut(s) 137
PspFI CCCAGC 2 cut(s) 111, 198
PspPI GGNCC 1 cut(s) 605
PstI CTGCAG 4 cut(s) 12, 50, 124, 281
PstNI CAGNNNCTG 1 cut(s) 156
PsuI RGATCY 1 cut(s) 1161
RsaI GTAC 2 cut(s) 781, 1137
RsaNI GTAC 2 cut(s) 780, 1136
RseI CAYNNNNRTG 2 cut(s) 298, 401
SacI GAGCTC 1 cut(s) 137
SalI GTCGAC 1 cut(s) 217
Sau3AI GATC 5 cut(s) 27, 304, 829, 839, 1161
Sau96I GGNCC 1 cut(s) 605
SchI GAGTC 1 cut(s) 390
ScrFI CCNGG 4 cut(s) 108, 195, 273, 501
SduI GDGCHC 2 cut(s) 137, 464
SfaNI GCATC 2 cut(s) 302, 346
SfcI CTRYAG 5 cut(s) 8, 46, 120, 277, 465
SinI GGWCC 1 cut(s) 605
SmiMI CAYNNNNRTG 2 cut(s) 298, 401
SpeI ACTAGT 1 cut(s) 512
Sse9I AATT 8 cut(s) 452, 596, 639, 676, 818, 927, 944, 1108
SsiI CCGC 5 cut(s) 78, 159, 176, 291, 584
SspI AATATT 1 cut(s) 496
SspMI CTAG 4 cut(s) 513, 759, 768, 1094
SstI GAGCTC 1 cut(s) 137
StyD4I CCNGG 4 cut(s) 106, 193, 271, 499
TaaI ACNGT 2 cut(s) 368, 469
TaqI TCGA 2 cut(s) 131, 218
TasI AATT 8 cut(s) 452, 596, 639, 676, 818, 927, 944, 1108
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 3 cut(s) 550, 733, 893
TscAI CASTG 2 cut(s) 371, 1078
TspDTI ATGAA 8 cut(s) 419, 542, 585, 660, 888, 897, 953, 1012
TspGWI ACGGA 2 cut(s) 100, 1110
TspRI CASTG 2 cut(s) 371, 1078
VpaK11BI GGWCC 1 cut(s) 605
XapI RAATTY 3 cut(s) 639, 944, 1108
XmiI GTMKAC 2 cut(s) 218, 370
XmnI GAANNNNTTC 1 cut(s) 944
XspI CTAG 4 cut(s) 513, 759, 768, 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.