Rmu_sc0000483.1_g000003

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000483.1
OG0000976
Physical Location & Seq
Forward (+)
11459 .. 12322
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000483.1_g000003.1.cds

Sequence Viewer

Length: 864 bp
atgagtaccacagtagaacctaaaaccaggatatcaaatatcccaagtattactactagttttgtcaccagccagaaaaaccattcacagcagatccataaggttacttggaatgaagtaacttctcctattgaatggaaattgtctggtgcgaaaaaaccagcagaaaatgccaaagcggcagtctatgaaaatagaaagactggagatatcagtctaaaattcgacgatcacagaaaaagtgatgtctgtcctaaaaatatcaggataaacaacaatcttctcagaagaagctacagcactagagaagctagtcttagtggtaccacatcctctgttgtcgattcatcagagcctatcactgaagaagaattagaggctgatctaaacaaaccagtaaatatgcttagagtacaaaagctctactacctctatgataaagcagaatcctgcaaaaatcctgaacgattagaaaaactattcgaagaaatgaaaattttcaaaataggaaatgaaagaaaactccttccctatccggatattgaaatggaagaaggagaaaactccaaaaccgtcatcttaagagaaaagggaaaaataaaactccctacacagaaagcccctacaggcaaaaatggagaaagaaattctcaaaaatttgtcccagaggacaatatacccaaaataccaatttatattcatggtatctggctgaatctggacaaagctctagacaagagaaaaactcttgaccaatgggttgatagcctgatgatgacttctgctctaacccttgaaaaatttgaagcaccagatcttcaggtgtactatgaaactactctcactggagtagcaaaaaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

287

Amino Acids

32.83

Weight (kDa)

8.9

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 323
AccIII TCCGGA 1 cut(s) 535
AciI CCGC 1 cut(s) 179
AclWI GGATC 1 cut(s) 88
AcsI RAATTY 5 cut(s) 221, 495, 646, 656, 800
AcuI CTGAAG 2 cut(s) 384, 803
AfaI GTAC 4 cut(s) 7, 325, 414, 827
AflII CTTAAG 1 cut(s) 580
AgsI TTSAA 5 cut(s) 134, 502, 545, 797, 806
AhlI ACTAGT 1 cut(s) 56
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 4 cut(s) 294, 311, 421, 728
AluI AGCT 4 cut(s) 294, 311, 421, 728
AlwI GGATC 1 cut(s) 88
Aor13HI TCCGGA 1 cut(s) 535
ApoI RAATTY 5 cut(s) 221, 495, 646, 656, 800
ArsI GACNNNNNNTTYG 2 cut(s) 168, 200
Asp700I GAANNNNTTC 1 cut(s) 497
Asp718I GGTACC 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 58
AsuII TTCGAA 1 cut(s) 483
BanI GGYRCC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 28
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 4 cut(s) 57, 303, 312, 731
BfmI CTRYAG 2 cut(s) 295, 624
BfrI CTTAAG 1 cut(s) 580
BglI GCCNNNNNGGC 1 cut(s) 179
BglII AGATCT 1 cut(s) 814
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 1 cut(s) 28
BplI GAGNNNNNCTC 2 cut(s) 730, 762
BpmI CTGGAG 1 cut(s) 225
Bpu14I TTCGAA 1 cut(s) 483
BsaWI WCCGGW 1 cut(s) 535
Bse1I ACTGG 3 cut(s) 208, 395, 850
BseAI TCCGGA 1 cut(s) 535
BseBI CCWGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 329
BseMII CTCAG 1 cut(s) 298
BseNI ACTGG 3 cut(s) 208, 395, 850
BshNI GGYRCC 1 cut(s) 323
BsiSI CCGG 1 cut(s) 536
BslFI GGGAC 1 cut(s) 647
BsmFI GGGAC 1 cut(s) 647
Bsp119I TTCGAA 1 cut(s) 483
Bsp13I TCCGGA 1 cut(s) 535
Bsp143I GATC 4 cut(s) 93, 229, 382, 814
BspACI CCGC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 297
BspEI TCCGGA 1 cut(s) 535
BspLI GGNNCC 1 cut(s) 325
BspPI GGATC 1 cut(s) 88
BspT104I TTCGAA 1 cut(s) 483
BspT107I GGYRCC 1 cut(s) 323
BspTI CTTAAG 1 cut(s) 580
BsrI ACTGG 3 cut(s) 208, 395, 850
BssMI GATC 4 cut(s) 93, 229, 382, 814
Bst2UI CCWGG 1 cut(s) 28
Bst4CI ACNGT 2 cut(s) 13, 574
BstAFI CTTAAG 1 cut(s) 580
BstAPI GCANNNNNTGC 1 cut(s) 170
BstBI TTCGAA 1 cut(s) 483
BstDEI CTNAG 3 cut(s) 284, 317, 407
BstF5I GGATG 1 cut(s) 329
BstKTI GATC 4 cut(s) 96, 232, 385, 817
BstMBI GATC 4 cut(s) 93, 229, 382, 814
BstMWI GCNNNNNNNGC 2 cut(s) 170, 179
BstNI CCWGG 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 26
BstSFI CTRYAG 2 cut(s) 295, 624
BstX2I RGATCY 2 cut(s) 93, 814
BstYI RGATCY 2 cut(s) 93, 814
BtsCI GGATG 1 cut(s) 329
BtsIMutI CAGTG 2 cut(s) 360, 843
Csp6I GTAC 4 cut(s) 6, 324, 413, 826
CviAII CATG 1 cut(s) 701
CviQI GTAC 4 cut(s) 6, 324, 413, 826
DdeI CTNAG 3 cut(s) 284, 317, 407
DpnI GATC 4 cut(s) 95, 231, 384, 816
DpnII GATC 4 cut(s) 93, 229, 382, 814
Eco32I GATATC 2 cut(s) 33, 211
Eco57I CTGAAG 2 cut(s) 384, 803
EcoRII CCWGG 1 cut(s) 26
EcoRV GATATC 2 cut(s) 33, 211
FaeI CATG 1 cut(s) 704
FaiI YATR 8 cut(s) 99, 189, 404, 435, 677, 696, 702, 831
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FaqI GGGAC 1 cut(s) 647
FatI CATG 1 cut(s) 700
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 4 cut(s) 57, 303, 312, 731
GluI GCNGC 1 cut(s) 180
GsuI CTGGAG 1 cut(s) 225
HapII CCGG 1 cut(s) 536
Hin1II CATG 1 cut(s) 704
HinfI GANTC 3 cut(s) 344, 446, 715
HpaII CCGG 1 cut(s) 536
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 826
Hpy188I TCNGA 2 cut(s) 287, 352
Hpy188III TCNNGA 6 cut(s) 265, 461, 536, 719, 731, 749
Hpy8I GTNNAC 1 cut(s) 826
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 2 cut(s) 536, 548
HpyCH4III ACNGT 2 cut(s) 13, 574
HpyCH4V TGCA 1 cut(s) 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 179
HpyF3I CTNAG 3 cut(s) 284, 317, 407
Hsp92II CATG 1 cut(s) 704
Kpn2I TCCGGA 1 cut(s) 535
KpnI GGTACC 1 cut(s) 327
Kzo9I GATC 4 cut(s) 93, 229, 382, 814
MaeI CTAG 4 cut(s) 57, 303, 312, 731
MaeIII GTNAC 3 cut(s) 64, 103, 118
MalI GATC 4 cut(s) 95, 231, 384, 816
MboI GATC 4 cut(s) 93, 229, 382, 814
MboII GAAGA 7 cut(s) 272, 300, 377, 380, 497, 563, 809
MflI RGATCY 2 cut(s) 93, 814
MluCI AATT 8 cut(s) 140, 221, 371, 495, 646, 656, 690, 800
MnlI CCTC 4 cut(s) 343, 370, 440, 661
MroI TCCGGA 1 cut(s) 535
MroXI GAANNNNTTC 1 cut(s) 497
MseI TTAA 1 cut(s) 581
MspCI CTTAAG 1 cut(s) 580
MspI CCGG 1 cut(s) 536
MspR9I CCNGG 1 cut(s) 28
MvaI CCWGG 1 cut(s) 28
MwoI GCNNNNNNNGC 2 cut(s) 170, 179
NdeII GATC 4 cut(s) 93, 229, 382, 814
NlaIII CATG 1 cut(s) 704
NlaIV GGNNCC 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 64
NspV TTCGAA 1 cut(s) 483
PdmI GAANNNNTTC 1 cut(s) 497
PfeI GAWTC 3 cut(s) 344, 446, 715
PkrI GCNGC 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 325
PsuI RGATCY 2 cut(s) 93, 814
RsaI GTAC 4 cut(s) 7, 325, 414, 827
RsaNI GTAC 4 cut(s) 6, 324, 413, 826
SaqAI TTAA 1 cut(s) 581
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 4 cut(s) 93, 229, 382, 814
ScrFI CCNGG 1 cut(s) 28
SetI ASST 8 cut(s) 22, 105, 296, 313, 423, 432, 730, 825
SfcI CTRYAG 2 cut(s) 295, 624
SfuI TTCGAA 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 580
SmoI CTYRAG 1 cut(s) 580
SpeI ACTAGT 1 cut(s) 56
Sse9I AATT 8 cut(s) 140, 221, 371, 495, 646, 656, 690, 800
SsiI CCGC 1 cut(s) 179
SspMI CTAG 4 cut(s) 57, 303, 312, 731
StyD4I CCNGG 1 cut(s) 26
TaaI ACNGT 2 cut(s) 13, 574
TaqI TCGA 3 cut(s) 225, 342, 483
TasI AATT 8 cut(s) 140, 221, 371, 495, 646, 656, 690, 800
TatI WGTACW 2 cut(s) 412, 825
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 3 cut(s) 344, 446, 715
Tru1I TTAA 1 cut(s) 581
Tru9I TTAA 1 cut(s) 581
TscAI CASTG 2 cut(s) 367, 850
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 7 cut(s) 129, 204, 336, 506, 528, 689, 846
TspRI CASTG 2 cut(s) 367, 850
Vha464I CTTAAG 1 cut(s) 580
XapI RAATTY 5 cut(s) 221, 495, 646, 656, 800
XbaI TCTAGA 1 cut(s) 730
XmnI GAANNNNTTC 1 cut(s) 497
XspI CTAG 4 cut(s) 57, 303, 312, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.