Rmu_sc0003832.1_g000032

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003832.1
OG0000976
Physical Location & Seq
Reverse (-)
160676 .. 162117
1442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003832.1_g000032.1.cds

Sequence Viewer

Length: 915 bp
atgatgagcatcttcgggaaaaagaaaggagttcaactcctaaatgctgaagaatttgaatacaacgaaatcgagcatgaggtaaaaaacgcctcaattccaaagctagatttcaaacagatctacaaaaggggaacgtttgacatgatgggtagccatcacttcaaattacttgaattcacaaccccctcaacaacaggagagacagatctcttgatgatcactccagctgaagttgccagagcacaagcaaagaatgatgtcggtcctgagaatctcaggataaacaggaatcttctcagaagaagctacagcactagagaagctagtgccagtggtacaaaacccactattgaagatcctattactgaagaagaactggaagctgatttgaacagaccagtccagatgttcagagctgagaggctctatgagctttatgaagaagcagagaattgcgaaaatcctgaacgattagaaaaactaatcgaagaaatgaaagaattcaaaatcagaaagacgagaaaagtctttccttatcaagatgttgaaatggaagaaggagaaagctccagaacttccatcagtcgagaaaagggaaaagtcaaactccctatacagaaggcccctacgggcagaaatggagaaagaaattctcaaagatttgtcccagaggacaagatacccaaagtaccaatttccaactatggcatttggctagatctggataaagctctagacaagagaaaaactcttgaccaatgggtagacagcctgatgatggcctctgctcttacccttggaaaatttgaagctcctgatcttcagatgtactttgaaactactctcaccggagtggcaaaaaagtattacttctctttcaaagagacagccagaggaaaagagtggctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

304

Amino Acids

35.26

Weight (kDa)

5.91

Isoelectric Point (pI)

34.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 768
AclI AACGTT 1 cut(s) 137
AclWI GGATC 1 cut(s) 353
AcsI RAATTY 5 cut(s) 53, 176, 503, 652, 806
AcuI CTGAAG 4 cut(s) 69, 252, 390, 809
AfaI GTAC 3 cut(s) 340, 693, 833
AfiI CCNNNNNNNGG 1 cut(s) 781
AleI CACNNNNGTG 1 cut(s) 854
Alw21I GWGCWC 1 cut(s) 247
Alw26I GTCTC 2 cut(s) 197, 881
AlwI GGATC 1 cut(s) 353
AoxI GGCC 2 cut(s) 624, 783
ApoI RAATTY 5 cut(s) 53, 176, 503, 652, 806
Asp700I GAANNNNTTC 1 cut(s) 503
AspS9I GGNCC 2 cut(s) 266, 625
AsuHPI GGTGA 1 cut(s) 841
AvaII GGWCC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 247
BccI CCATC 4 cut(s) 142, 165, 590, 775
BclI TGATCA 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 197, 881
BfaI CTAG 5 cut(s) 107, 318, 327, 719, 737
BfmI CTRYAG 1 cut(s) 310
BglII AGATCT 3 cut(s) 120, 208, 721
Bme18I GGWCC 1 cut(s) 266
BmgT120I GGNCC 2 cut(s) 266, 625
BmiI GGNNCC 1 cut(s) 627
BmsI GCATC 1 cut(s) 18
BplI GAGNNNNNCTC 4 cut(s) 21, 53, 736, 768
BpmI CTGGAG 2 cut(s) 210, 556
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 799
BsaWI WCCGGW 1 cut(s) 851
Bsc4I CCNNNNNNNGG 1 cut(s) 781
Bse1I ACTGG 3 cut(s) 333, 384, 401
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 799
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 781
BseMII CTCAG 4 cut(s) 261, 292, 313, 411
BseNI ACTGG 3 cut(s) 333, 384, 401
BshFI GGCC 2 cut(s) 626, 785
BsiHKAI GWGCWC 1 cut(s) 247
BsiSI CCGG 1 cut(s) 852
BslFI GGGAC 1 cut(s) 653
BslI CCNNNNNNNGG 1 cut(s) 781
BsmAI GTCTC 2 cut(s) 197, 881
BsmFI GGGAC 1 cut(s) 653
BsnI GGCC 2 cut(s) 626, 785
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 6 cut(s) 120, 208, 219, 358, 721, 820
BspANI GGCC 2 cut(s) 626, 785
BspCNI CTCAG 4 cut(s) 262, 291, 312, 412
BspLI GGNNCC 1 cut(s) 627
BspPI GGATC 1 cut(s) 353
BsrI ACTGG 3 cut(s) 333, 384, 401
BssECI CCNNGG 1 cut(s) 799
BssMI GATC 6 cut(s) 120, 208, 219, 358, 721, 820
BssT1I CCWWGG 1 cut(s) 799
BstDEI CTNAG 4 cut(s) 270, 278, 299, 420
BstKTI GATC 6 cut(s) 123, 211, 222, 361, 724, 823
BstMAI GTCTC 2 cut(s) 197, 881
BstMBI GATC 6 cut(s) 120, 208, 219, 358, 721, 820
BstMWI GCNNNNNNNGC 2 cut(s) 236, 433
BstSFI CTRYAG 1 cut(s) 310
BstX2I RGATCY 4 cut(s) 120, 208, 358, 721
BstYI RGATCY 4 cut(s) 120, 208, 358, 721
BsuRI GGCC 2 cut(s) 626, 785
BtsIMutI CAGTG 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 266, 625
Csp6I GTAC 3 cut(s) 339, 692, 832
CviAII CATG 2 cut(s) 77, 145
CviQI GTAC 3 cut(s) 339, 692, 832
DdeI CTNAG 4 cut(s) 270, 278, 299, 420
DpnI GATC 6 cut(s) 122, 210, 221, 360, 723, 822
DpnII GATC 6 cut(s) 120, 208, 219, 358, 721, 820
Eco130I CCWWGG 1 cut(s) 799
Eco47I GGWCC 1 cut(s) 266
Eco57I CTGAAG 4 cut(s) 69, 252, 390, 809
EcoO109I RGGNCCY 1 cut(s) 625
EcoRI GAATTC 2 cut(s) 176, 503
EcoT14I CCWWGG 1 cut(s) 799
ErhI CCWWGG 1 cut(s) 799
FaeI CATG 2 cut(s) 80, 148
FaiI YATR 6 cut(s) 78, 146, 432, 441, 617, 708
FalI AAGNNNNNCTT 2 cut(s) 857, 889
FaqI GGGAC 1 cut(s) 653
FatI CATG 2 cut(s) 76, 144
FbaI TGATCA 1 cut(s) 219
FblI GTMKAC 1 cut(s) 768
FspBI CTAG 5 cut(s) 107, 318, 327, 719, 737
GsuI CTGGAG 2 cut(s) 210, 556
HaeIII GGCC 2 cut(s) 626, 785
HapII CCGG 1 cut(s) 852
Hin1II CATG 2 cut(s) 80, 148
HinfI GANTC 2 cut(s) 274, 292
HpaII CCGG 1 cut(s) 852
HphI GGTGA 1 cut(s) 841
Hpy166II GTNNAC 1 cut(s) 769
Hpy188I TCNGA 4 cut(s) 302, 416, 515, 828
Hpy8I GTNNAC 1 cut(s) 769
HpyAV CCTTC 2 cut(s) 554, 616
HpyCH4IV ACGT 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 433
HpyF3I CTNAG 4 cut(s) 270, 278, 299, 420
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 2 cut(s) 80, 148
Ksp22I TGATCA 1 cut(s) 219
Kzo9I GATC 6 cut(s) 120, 208, 219, 358, 721, 820
LmnI GCTCC 2 cut(s) 575, 820
LweI GCATC 1 cut(s) 18
MaeI CTAG 5 cut(s) 107, 318, 327, 719, 737
MaeII ACGT 1 cut(s) 137
MalI GATC 6 cut(s) 122, 210, 221, 360, 723, 822
MboI GATC 6 cut(s) 120, 208, 219, 358, 721, 820
MflI RGATCY 4 cut(s) 120, 208, 358, 721
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 9 cut(s) 53, 96, 167, 176, 454, 503, 652, 696, 806
MmeI TCCRAC 1 cut(s) 726
MnlI CCTC 7 cut(s) 73, 103, 199, 417, 667, 796, 890
MroXI GAANNNNTTC 1 cut(s) 503
MslI CAYNNNNRTG 1 cut(s) 854
MspA1I CMGCKG 1 cut(s) 230
MspI CCGG 1 cut(s) 852
MwoI GCNNNNNNNGC 2 cut(s) 236, 433
NdeII GATC 6 cut(s) 120, 208, 219, 358, 721, 820
NlaIII CATG 2 cut(s) 80, 148
NlaIV GGNNCC 1 cut(s) 627
OliI CACNNNNGTG 1 cut(s) 854
PdmI GAANNNNTTC 1 cut(s) 503
PfeI GAWTC 2 cut(s) 274, 292
Psp1406I AACGTT 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 627
PspPI GGNCC 2 cut(s) 266, 625
PsuI RGATCY 4 cut(s) 120, 208, 358, 721
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 3 cut(s) 340, 693, 833
RsaNI GTAC 3 cut(s) 339, 692, 832
RseI CAYNNNNRTG 1 cut(s) 854
Sau3AI GATC 6 cut(s) 120, 208, 219, 358, 721, 820
Sau96I GGNCC 2 cut(s) 266, 625
SduI GDGCHC 1 cut(s) 247
SfaNI GCATC 1 cut(s) 18
SfcI CTRYAG 1 cut(s) 310
SinI GGWCC 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 854
Sse9I AATT 9 cut(s) 53, 96, 167, 176, 454, 503, 652, 696, 806
SspMI CTAG 5 cut(s) 107, 318, 327, 719, 737
StyI CCWWGG 1 cut(s) 799
TaiI ACGT 1 cut(s) 140
TaqI TCGA 3 cut(s) 72, 489, 589
TaqII GACCGA 1 cut(s) 254
TasI AATT 9 cut(s) 53, 96, 167, 176, 454, 503, 652, 696, 806
TatI WGTACW 1 cut(s) 831
TfiI GAWTC 2 cut(s) 274, 292
TscAI CASTG 1 cut(s) 340
TspDTI ATGAA 2 cut(s) 456, 512
TspRI CASTG 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 266
XapI RAATTY 5 cut(s) 53, 176, 503, 652, 806
XbaI TCTAGA 1 cut(s) 736
XmiI GTMKAC 1 cut(s) 768
XmnI GAANNNNTTC 1 cut(s) 503
XspI CTAG 5 cut(s) 107, 318, 327, 719, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.