FvH4_4g10003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000976
Physical Location & Seq
Forward (+)
12465066 .. 12465645
580 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10003.t1

Sequence Viewer

Length: 381 bp
ATGAAAGATGGAGAAAGCTCCTCAAGACATCCACAGACTGCCATTATCAAAATTGGTAGAGATACAAAACCTCTTGAAAGAAAAGAGCCTACAGGAAAGAGAGATGACAGAAACTCTCAAAGATTTGTCCCAGAACTAAGCATACCAAAAATACCAATATCACAGCATGGTAACTGGTTAGATCTGGAAAAGGCTCTAGATAAGAAGAAAGCCATAGATGACTGGGTCAATGCAATGTTTATGGCAGCTTGTACAACTTATGGAAAGTTTGAGGCACAAGACCTACAAACAGTCTATCAAGCTACTCTTACAGGAATGACAAAGAAATTTTATCTTGCTTGGAAAGAAACCCAAAGGGGTAGAGAGATATGGAGAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.63

Weight (kDa)

9.52

Isoelectric Point (pI)

31.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 326
AfaI GTAC 1 cut(s) 253
AgsI TTSAA 1 cut(s) 77
AluBI AGCT 3 cut(s) 18, 248, 302
AluI AGCT 3 cut(s) 18, 248, 302
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 326
BbvI GCAGC 1 cut(s) 257
BccI CCATC 1 cut(s) 2
BfaI CTAG 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 90
BglII AGATCT 1 cut(s) 181
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
BmrI ACTGGG 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 7
Bse1I ACTGG 2 cut(s) 179, 227
Bse3DI GCAATG 1 cut(s) 240
BseGI GGATG 1 cut(s) 28
BseMI GCAATG 1 cut(s) 240
BseNI ACTGG 2 cut(s) 179, 227
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 1 cut(s) 257
BslFI GGGAC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 113
Bsp1407I TGTACA 1 cut(s) 251
Bsp143I GATC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 240
BsrGI TGTACA 1 cut(s) 251
BsrI ACTGG 2 cut(s) 179, 227
BssMI GATC 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 292
BstAUI TGTACA 1 cut(s) 251
BstDEI CTNAG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 28
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 257
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BtsCI GGATG 1 cut(s) 28
Csp6I GTAC 1 cut(s) 252
CviAII CATG 1 cut(s) 167
CviJI RGCY 6 cut(s) 18, 88, 194, 212, 248, 302
CviKI_1 RGCY 6 cut(s) 18, 88, 194, 212, 248, 302
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 1 cut(s) 137
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
FaeI CATG 1 cut(s) 170
FaiI YATR 7 cut(s) 143, 168, 215, 242, 261, 370, 379
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 1 cut(s) 113
FatI CATG 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 1 cut(s) 197
GluI GCNGC 1 cut(s) 246
Hin1II CATG 1 cut(s) 170
Hpy188III TCNNGA 4 cut(s) 24, 74, 185, 197
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 137
Hsp92II CATG 1 cut(s) 170
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 6 cut(s) 78, 144, 160, 170, 208, 297
Lsp1109I GCAGC 1 cut(s) 257
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 170
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 1 cut(s) 217
MflI RGATCY 1 cut(s) 181
MluCI AATT 2 cut(s) 51, 326
MnlI CCTC 3 cut(s) 31, 81, 265
NdeII GATC 1 cut(s) 181
NlaIII CATG 1 cut(s) 170
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 1 cut(s) 247
PsrI GAACNNNNNNTAC 2 cut(s) 126, 158
PsuI RGATCY 1 cut(s) 181
PsyI GACNNNGTC 1 cut(s) 224
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 1 cut(s) 181
SetI ASST 5 cut(s) 20, 73, 250, 285, 304
SfcI CTRYAG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 2 cut(s) 51, 326
SspMI CTAG 1 cut(s) 197
TaaI ACNGT 1 cut(s) 292
TasI AATT 2 cut(s) 51, 326
TatI WGTACW 1 cut(s) 251
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 224
XapI RAATTY 1 cut(s) 326
XbaI TCTAGA 1 cut(s) 196
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.