Rmu_sc0002845.1_g000028

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002845.1
Physical Location & Seq
Reverse (-)
126406 .. 128313
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002845.1_g000028.1.cds

Sequence Viewer

Length: 1206 bp
atgcaagaactcgcaatagtatacagaatatactataaattgatgagcactacagtagcccccaagaccagaataacaaatattccaggtcttactactggtttcctcaccaatcagaagaaccattcacaacagattcataaagttacttggaatgaagtaacttttcctattgaatggcaattatccggtccaaaaaagctaccggaaagagcgaaagcaaaaatttatgaaagtagaaagactggagaaatcagtctcaattttgacaatcacagaaaaagtgatgtctgtcctgagaacctcaggataaataaaaatcttctcagaagaagctatagcactagagaaggtagtgttagtggtacaaaacctactgtcgaagaaccaatatctgaagaagaattggaagctgatctaaacagaccagtacatatgttcagagcagaaaggctccatgaactctatgaagaagcagaatcttgtgaaaaccctgaacgattagaaaaactaatcgaagaaatgaaagaattcaaaatcagaaagataagaaaagtctttccatatcaagatattgaaatggaagaaggagaaagctccagaactttcatcagcagagaaaaagggaaaacaaaactcccatttcagaaagcccccacgggtaaaaaaggggaaagaaattcccagagatttatccccgaggacaatatgcccagagttccaatcacgaactatggcatctggttaaatctagacaagagtctagataaaagaaaaaccattgaccaatgggtagatagcctgatgatggcttctgcacttacccttggaaaatttgaagcaccagatttgcaggtgtactatgaaactactcttactggagtagcaaaaaagtattatctgtcattcaaagaaactgtcagaggaagagattggctagaagaaatcaaaaattcaaaatctccttatgattttgcagtacccctatctactaaagctctctttgaagaatatgagcagatagtggaaatagcgaatatgaaaggctacgaaatagcctattctgatgatgaagatgacaacaggtcagtttattctgcctggtctgaagaaaattcatctgggtctgagacagattctgaagtagagtactttgaatccagacaaatgaatgtcttgagaataaaaaaactgggaagaaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

401

Amino Acids

46.84

Weight (kDa)

6.35

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 844
Acc36I ACCTGC 1 cut(s) 844
AccI GTMKAC 1 cut(s) 21
AcsI RAATTY 6 cut(s) 225, 530, 679, 833, 952, 1114
AcuI CTGAAG 3 cut(s) 417, 1128, 1161
AfaI GTAC 5 cut(s) 367, 432, 860, 981, 1151
AfiI CCNNNNNNNGG 1 cut(s) 808
AgsI TTSAA 8 cut(s) 176, 535, 578, 839, 910, 957, 1007, 1157
AhdI GACNNNNNGTC 1 cut(s) 1084
AjnI CCWGG 2 cut(s) 85, 1100
AluBI AGCT 5 cut(s) 202, 336, 413, 597, 998
AluI AGCT 5 cut(s) 202, 336, 413, 597, 998
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 2 cut(s) 263, 1124
AlwNI CAGNNNCTG 1 cut(s) 1139
Ama87I CYCGRG 1 cut(s) 698
ApoI RAATTY 6 cut(s) 225, 530, 679, 833, 952, 1114
ArsI GACNNNNNNTTYG 2 cut(s) 903, 935
Asp700I GAANNNNTTC 1 cut(s) 530
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 698
AvaII GGWCC 1 cut(s) 191
AxyI CCTNAGG 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 50
BccI CCATC 1 cut(s) 802
BciT130I CCWGG 2 cut(s) 87, 1102
BcoDI GTCTC 2 cut(s) 263, 1124
BfaI CTAG 4 cut(s) 345, 752, 764, 938
BfmI CTRYAG 2 cut(s) 51, 337
BfuAI ACCTGC 1 cut(s) 844
BmcAI AGTACT 1 cut(s) 1151
Bme1390I CCNGG 2 cut(s) 87, 1102
Bme18I GGWCC 1 cut(s) 191
BmeRI GACNNNNNGTC 1 cut(s) 1084
BmeT110I CYCGRG 1 cut(s) 698
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 455
BmrFI CCNGG 2 cut(s) 87, 1102
BmrI ACTGGG 1 cut(s) 1202
BmsI GCATC 1 cut(s) 747
BmuI ACTGGG 1 cut(s) 1202
BoxI GACNNNNGTC 1 cut(s) 759
BpmI CTGGAG 3 cut(s) 267, 583, 900
BpuEI CTTGAG 1 cut(s) 1198
BsaJI CCNNGG 3 cut(s) 657, 699, 826
BsaWI WCCGGW 2 cut(s) 188, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 808
Bse1I ACTGG 5 cut(s) 103, 250, 428, 883, 1197
Bse21I CCTNAGG 1 cut(s) 305
BseBI CCWGG 2 cut(s) 87, 1102
BseDI CCNNGG 3 cut(s) 657, 699, 826
BseLI CCNNNNNNNGG 1 cut(s) 808
BseMII CTCAG 4 cut(s) 288, 319, 340, 1119
BseNI ACTGG 5 cut(s) 103, 250, 428, 883, 1197
BsgI GTGCAG 1 cut(s) 801
BsiHKAI GWGCWC 1 cut(s) 50
BsiHKCI CYCGRG 1 cut(s) 698
BsiSI CCGG 2 cut(s) 189, 206
BslI CCNNNNNNNGG 1 cut(s) 808
BsmAI GTCTC 2 cut(s) 263, 1124
BsoBI CYCGRG 1 cut(s) 698
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 415
BspCNI CTCAG 4 cut(s) 289, 318, 339, 1120
BspLI GGNNCC 1 cut(s) 455
BspMI ACCTGC 1 cut(s) 844
BsrI ACTGG 5 cut(s) 103, 250, 428, 883, 1197
BssECI CCNNGG 3 cut(s) 657, 699, 826
BssMI GATC 1 cut(s) 415
BssNAI GTATAC 1 cut(s) 22
BssT1I CCWWGG 1 cut(s) 826
Bst1107I GTATAC 1 cut(s) 22
Bst2UI CCWGG 2 cut(s) 87, 1102
Bst4CI ACNGT 3 cut(s) 55, 379, 919
Bst6I CTCTTC 1 cut(s) 922
BstDEI CTNAG 4 cut(s) 297, 305, 326, 1128
BstDSI CCRYGG 1 cut(s) 657
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 2 cut(s) 263, 1124
BstMBI GATC 1 cut(s) 415
BstNI CCWGG 2 cut(s) 87, 1102
BstPAI GACNNNNGTC 1 cut(s) 759
BstSCI CCNGG 2 cut(s) 85, 1100
BstSFI CTRYAG 2 cut(s) 51, 337
BstZ17I GTATAC 1 cut(s) 22
Bsu36I CCTNAGG 1 cut(s) 305
BtgI CCRYGG 1 cut(s) 657
BveI ACCTGC 1 cut(s) 844
CaiI CAGNNNCTG 1 cut(s) 1139
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 5 cut(s) 366, 431, 859, 980, 1150
CviAII CATG 1 cut(s) 458
CviQI GTAC 5 cut(s) 366, 431, 859, 980, 1150
DdeI CTNAG 4 cut(s) 297, 305, 326, 1128
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
DriI GACNNNNNGTC 1 cut(s) 1084
Eam1104I CTCTTC 1 cut(s) 922
Eam1105I GACNNNNNGTC 1 cut(s) 1084
EarI CTCTTC 1 cut(s) 922
Eco130I CCWWGG 1 cut(s) 826
Eco47I GGWCC 1 cut(s) 191
Eco57I CTGAAG 3 cut(s) 417, 1128, 1161
Eco81I CCTNAGG 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 698
EcoRI GAATTC 1 cut(s) 530
EcoRII CCWGG 2 cut(s) 85, 1100
EcoT14I CCWWGG 1 cut(s) 826
ErhI CCWWGG 1 cut(s) 826
FaeI CATG 1 cut(s) 461
FatI CATG 1 cut(s) 457
FauNDI CATATG 1 cut(s) 435
FblI GTMKAC 1 cut(s) 21
FspBI CTAG 4 cut(s) 345, 752, 764, 938
GsuI CTGGAG 3 cut(s) 267, 583, 900
HapII CCGG 2 cut(s) 189, 206
Hin1II CATG 1 cut(s) 461
HinfI GANTC 5 cut(s) 136, 479, 760, 1136, 1157
HpaII CCGG 2 cut(s) 189, 206
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 22, 859
Hpy188III TCNNGA 9 cut(s) 296, 307, 569, 600, 727, 752, 764, 1161, 1177
Hpy8I GTNNAC 2 cut(s) 22, 859
HpyAV CCTTC 2 cut(s) 344, 581
HpyCH4III ACNGT 3 cut(s) 55, 379, 919
HpyCH4V TGCA 4 cut(s) 4, 818, 853, 977
HpyF3I CTNAG 4 cut(s) 297, 305, 326, 1128
Hsp92II CATG 1 cut(s) 461
Kzo9I GATC 1 cut(s) 415
LmnI GCTCC 2 cut(s) 459, 602
LweI GCATC 1 cut(s) 747
MaeI CTAG 4 cut(s) 345, 752, 764, 938
MaeIII GTNAC 2 cut(s) 145, 160
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MhlI GDGCHC 1 cut(s) 50
MlyI GAGTC 1 cut(s) 769
MnlI CCTC 4 cut(s) 116, 314, 694, 917
MroXI GAANNNNTTC 1 cut(s) 530
MseI TTAA 1 cut(s) 746
MspI CCGG 2 cut(s) 189, 206
MspR9I CCNGG 2 cut(s) 87, 1102
MvaI CCWGG 2 cut(s) 87, 1102
NdeI CATATG 1 cut(s) 435
NdeII GATC 1 cut(s) 415
NlaIII CATG 1 cut(s) 461
NlaIV GGNNCC 1 cut(s) 455
PaqCI CACCTGC 1 cut(s) 844
PdmI GAANNNNTTC 1 cut(s) 530
PfeI GAWTC 4 cut(s) 136, 479, 1136, 1157
PleI GAGTC 1 cut(s) 768
PpsI GAGTC 1 cut(s) 768
PshAI GACNNNNGTC 1 cut(s) 759
Psp6I CCWGG 2 cut(s) 85, 1100
PspGI CCWGG 2 cut(s) 85, 1100
PspN4I GGNNCC 1 cut(s) 455
PspPI GGNCC 1 cut(s) 191
PstNI CAGNNNCTG 1 cut(s) 1139
RsaI GTAC 5 cut(s) 367, 432, 860, 981, 1151
RsaNI GTAC 5 cut(s) 366, 431, 859, 980, 1150
SaqAI TTAA 1 cut(s) 746
Sau3AI GATC 1 cut(s) 415
Sau96I GGNCC 1 cut(s) 191
ScaI AGTACT 1 cut(s) 1151
SchI GAGTC 1 cut(s) 769
ScrFI CCNGG 2 cut(s) 87, 1102
SduI GDGCHC 1 cut(s) 50
SfaNI GCATC 1 cut(s) 747
SfcI CTRYAG 2 cut(s) 51, 337
SinI GGWCC 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 1177
SmoI CTYRAG 1 cut(s) 1177
SspI AATATT 1 cut(s) 82
SspMI CTAG 4 cut(s) 345, 752, 764, 938
StyD4I CCNGG 2 cut(s) 85, 1100
StyI CCWWGG 1 cut(s) 826
TaaI ACNGT 3 cut(s) 55, 379, 919
TaqI TCGA 2 cut(s) 381, 516
TatI WGTACW 3 cut(s) 430, 858, 1149
TfiI GAWTC 4 cut(s) 136, 479, 1136, 1157
Tru1I TTAA 1 cut(s) 746
Tru9I TTAA 1 cut(s) 746
VpaK11BI GGWCC 1 cut(s) 191
XapI RAATTY 6 cut(s) 225, 530, 679, 833, 952, 1114
XbaI TCTAGA 2 cut(s) 751, 763
XmiI GTMKAC 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 530
XspI CTAG 4 cut(s) 345, 752, 764, 938
ZrmI AGTACT 1 cut(s) 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.