Rmu_sc0002148.1_g000003

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002148.1
OG0000976
Physical Location & Seq
Reverse (-)
16559 .. 17353
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002148.1_g000003.1.cds

Sequence Viewer

Length: 795 bp
atgcaatcaagcattcaagtggcatatttcaacagcttcccaaatttctcaaccagcttgaaagatgcagctcactgtctaagactgagagtcaagacagatgacatatcaatgaaaaaagatatgcaagaactggctatagtatacagaatatactataagttgatgagcaccacagtggaacctaaaactaggatatcaaatattccaggtctcactattggtttcctcaccagccagaaaaatcattcacaacagatccacaaggttacttggaatgaagtaacttttcctattgaatggaaattgtctggtccgaaaaaaccagcaaaaaatgccaaagcggcaatttatgaaagcagaaagactggagatatcagcctaaaatttaacgatcacagaaaaagtgacgtctgtctcaggataaacaacaatcttctcaaaagaagctacagaactagagaagctagtgttagtggtaccaaatactctaaagaaccatcagagtccatcactgaagaagaattagaagctgatctaaacagacaagtcaatatgcttagagcacaaaagctctatgatctctatgaagaagcagaaaactgcgaatatcctgaacgattagaaaaactaatcgaagaaaagaaatttttcaaaccaagaaagaaaagaaaactccttccctatcaggatattgaaatggaagaaggagagagctccaaaacttccatcattagagaaaagggaaaagtaaaacttcctttacagaaggccactacgggcaaaaatggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

264

Amino Acids

30.64

Weight (kDa)

9.51

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 414
Acc65I GGTACC 1 cut(s) 479
AccB1I GGYRCC 1 cut(s) 479
AccI GTMKAC 1 cut(s) 144
AciI CCGC 1 cut(s) 344
AclWI GGATC 1 cut(s) 253
AcsI RAATTY 3 cut(s) 43, 386, 647
AcuI CTGAAG 1 cut(s) 537
AcyI GRCGYC 1 cut(s) 411
AfaI GTAC 1 cut(s) 481
AgsI TTSAA 6 cut(s) 17, 31, 61, 299, 655, 698
AhdI GACNNNNNGTC 1 cut(s) 89
AjnI CCWGG 1 cut(s) 208
AleI CACNNNNGTG 1 cut(s) 176
AluBI AGCT 8 cut(s) 36, 57, 71, 450, 467, 533, 574, 717
AluI AGCT 8 cut(s) 36, 57, 71, 450, 467, 533, 574, 717
Alw21I GWGCWC 3 cut(s) 173, 568, 719
Alw26I GTCTC 2 cut(s) 218, 422
AlwI GGATC 1 cut(s) 253
AoxI GGCC 1 cut(s) 771
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 3 cut(s) 43, 386, 647
Asp700I GAANNNNTTC 1 cut(s) 650
Asp718I GGTACC 1 cut(s) 479
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 223
AvaII GGWCC 1 cut(s) 314
BanI GGYRCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 719
Bbv12I GWGCWC 3 cut(s) 173, 568, 719
BbvI GCAGC 1 cut(s) 80
BccI CCATC 3 cut(s) 508, 518, 737
BciT130I CCWGG 1 cut(s) 210
BcoDI GTCTC 2 cut(s) 218, 422
BfaI CTAG 3 cut(s) 192, 459, 468
BfmI CTRYAG 2 cut(s) 138, 451
BglI GCCNNNNNGGC 1 cut(s) 344
BisI GCNGC 2 cut(s) 69, 345
BlsI GCNGC 2 cut(s) 70, 346
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 314
BmeRI GACNNNNNGTC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 2 cut(s) 183, 481
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 55
BoxI GACNNNNGTC 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 390
BsaHI GRCGYC 1 cut(s) 411
BsaI GGTCTC 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 138, 373
BseBI CCWGG 1 cut(s) 210
BseMII CTCAG 2 cut(s) 77, 433
BseNI ACTGG 2 cut(s) 138, 373
BseXI GCAGC 1 cut(s) 80
BshFI GGCC 1 cut(s) 773
BshNI GGYRCC 1 cut(s) 479
BsiHKAI GWGCWC 3 cut(s) 173, 568, 719
BsmAI GTCTC 2 cut(s) 218, 422
BsmI GAATGC 1 cut(s) 12
BsnI GGCC 1 cut(s) 773
Bso31I GGTCTC 1 cut(s) 218
Bsp1286I GDGCHC 3 cut(s) 173, 568, 719
Bsp143I GATC 4 cut(s) 258, 394, 535, 580
BspACI CCGC 1 cut(s) 344
BspANI GGCC 1 cut(s) 773
BspCNI CTCAG 2 cut(s) 78, 432
BspLI GGNNCC 2 cut(s) 183, 481
BspPI GGATC 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 479
BspTNI GGTCTC 1 cut(s) 218
BsrI ACTGG 2 cut(s) 138, 373
BssMI GATC 4 cut(s) 258, 394, 535, 580
BssNAI GTATAC 1 cut(s) 145
BssNI GRCGYC 1 cut(s) 411
Bst1107I GTATAC 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 77, 178
BstACI GRCGYC 1 cut(s) 411
BstAPI GCANNNNNTGC 1 cut(s) 335
BstDEI CTNAG 4 cut(s) 80, 86, 419, 560
BstKTI GATC 4 cut(s) 261, 397, 538, 583
BstMAI GTCTC 2 cut(s) 218, 422
BstMBI GATC 4 cut(s) 258, 394, 535, 580
BstMWI GCNNNNNNNGC 2 cut(s) 335, 344
BstNI CCWGG 1 cut(s) 210
BstPAI GACNNNNGTC 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 2 cut(s) 138, 451
BstV1I GCAGC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
BstZ17I GTATAC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 773
BtsIMutI CAGTG 3 cut(s) 73, 183, 513
Cfr13I GGNCC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 480
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 4 cut(s) 80, 86, 419, 560
DpnI GATC 4 cut(s) 260, 396, 537, 582
DpnII GATC 4 cut(s) 258, 394, 535, 580
DriI GACNNNNNGTC 1 cut(s) 89
Eam1105I GACNNNNNGTC 1 cut(s) 89
Ecl136II GAGCTC 1 cut(s) 717
Eco24I GRGCYC 1 cut(s) 719
Eco31I GGTCTC 1 cut(s) 218
Eco32I GATATC 2 cut(s) 198, 376
Eco47I GGWCC 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 717
Eco57I CTGAAG 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 717
EcoRII CCWGG 1 cut(s) 208
EcoRV GATATC 2 cut(s) 198, 376
EcoT38I GRGCYC 1 cut(s) 719
FalI AAGNNNNNCTT 2 cut(s) 741, 773
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 69, 345
FriOI GRGCYC 1 cut(s) 719
Fsp4HI GCNGC 2 cut(s) 69, 345
FspBI CTAG 3 cut(s) 192, 459, 468
GluI GCNGC 2 cut(s) 69, 345
GsuI CTGGAG 1 cut(s) 390
HaeIII GGCC 1 cut(s) 773
Hin1I GRCGYC 1 cut(s) 411
HinfI GANTC 2 cut(s) 90, 506
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 318, 505
Hpy188III TCNNGA 4 cut(s) 94, 421, 614, 689
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 3 cut(s) 689, 701, 763
HpyCH4III ACNGT 2 cut(s) 77, 178
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 3 cut(s) 4, 68, 127
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 344
HpyF3I CTNAG 4 cut(s) 80, 86, 419, 560
HpySE526I ACGT 1 cut(s) 411
Hsp92I GRCGYC 1 cut(s) 411
KpnI GGTACC 1 cut(s) 483
Kzo9I GATC 4 cut(s) 258, 394, 535, 580
LmnI GCTCC 1 cut(s) 722
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 1 cut(s) 55
MaeI CTAG 3 cut(s) 192, 459, 468
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 3 cut(s) 268, 283, 407
MalI GATC 4 cut(s) 260, 396, 537, 582
MboI GATC 4 cut(s) 258, 394, 535, 580
MboII GAAGA 6 cut(s) 428, 530, 533, 602, 650, 716
MflI RGATCY 1 cut(s) 258
MhlI GDGCHC 3 cut(s) 173, 568, 719
MluCI AATT 6 cut(s) 43, 305, 348, 386, 524, 647
MlyI GAGTC 2 cut(s) 99, 515
MnlI CCTC 1 cut(s) 239
MroXI GAANNNNTTC 1 cut(s) 650
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 3 cut(s) 17, 110, 176
MspR9I CCNGG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 12
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 335, 344
NdeII GATC 4 cut(s) 258, 394, 535, 580
NlaIV GGNNCC 2 cut(s) 183, 481
NmuCI GTSAC 1 cut(s) 407
OliI CACNNNNGTG 1 cut(s) 176
PctI GAATGC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 650
PkrI GCNGC 2 cut(s) 70, 346
PleI GAGTC 2 cut(s) 98, 514
PpsI GAGTC 2 cut(s) 98, 514
PshAI GACNNNNGTC 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 719
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 183, 481
PspPI GGNCC 1 cut(s) 314
PsuI RGATCY 1 cut(s) 258
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
RseI CAYNNNNRTG 3 cut(s) 17, 110, 176
SacI GAGCTC 1 cut(s) 719
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 2 cut(s) 69, 345
Sau3AI GATC 4 cut(s) 258, 394, 535, 580
Sau96I GGNCC 1 cut(s) 314
SchI GAGTC 2 cut(s) 99, 515
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 3 cut(s) 173, 568, 719
SfaNI GCATC 1 cut(s) 55
SfcI CTRYAG 2 cut(s) 138, 451
SinI GGWCC 1 cut(s) 314
SmiMI CAYNNNNRTG 3 cut(s) 17, 110, 176
Sse9I AATT 6 cut(s) 43, 305, 348, 386, 524, 647
SsiI CCGC 1 cut(s) 344
SspI AATATT 1 cut(s) 205
SspMI CTAG 3 cut(s) 192, 459, 468
SstI GAGCTC 1 cut(s) 719
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 2 cut(s) 77, 178
TaiI ACGT 1 cut(s) 414
TaqI TCGA 1 cut(s) 636
TasI AATT 6 cut(s) 43, 305, 348, 386, 524, 647
TauI GCSGC 1 cut(s) 347
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 3 cut(s) 80, 183, 520
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 4 cut(s) 128, 294, 369, 603
TspRI CASTG 3 cut(s) 80, 183, 520
VpaK11BI GGWCC 1 cut(s) 314
XapI RAATTY 3 cut(s) 43, 386, 647
XmiI GTMKAC 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 650
XspI CTAG 3 cut(s) 192, 459, 468
ZraI GACGTC 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.