Rmu_sc0036248.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036248.1
OG0000976
Physical Location & Seq
Forward (+)
1 .. 691
691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036248.1_g000001.1.cds

Sequence Viewer

Length: 691 bp
aacagacttccaagctagtctgttgggaacgctcgaagcatccctatgcgaccaagtggcatatttcaactgcttccccaatttcaccaccagcttgaaagatgcagctcactgcctcagactaagagtcaagacagatggcatatccatgaaagaagatatgcaggaacttgcaatagtatatagaatatactataaattgatgagtaccacagtagcccctaagacgaggattacaaatatcccaggtcttactactggattcctcaccaatcagaagaaccattcacagcagatccacaaagttacttggaatgaagtaacatttccccctgaatggaaattatccggtccaaaaaagcaaccggaaagagcaaaagcaaaaatctacgagagtagaagaactggagaaatcagcctcaacttcgacaatcacaggaaaagtgatgtctgtcctgagaacctcaggataaacagctgtcttctgagaagaagctacagcactagagaagctagtatcagtggaacaaaacccactattaaagagccaatatcagaagaagatctggaagctgatctaaacagaccagtccatatgctcagagctgaaaagctctatgatctttatgaagaagctgagaattgtgaaaatcctgaacgattagaaaaactaatcgaagaaatgaaagaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

230

Amino Acids

26.53

Weight (kDa)

6.52

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 290
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 337
AgsI TTSAA 2 cut(s) 68, 98
AhdI GACNNNNNGTC 1 cut(s) 126
AjnI CCWGG 1 cut(s) 245
AlwI GGATC 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 351
AsuHPI GGTGA 2 cut(s) 77, 260
AvaII GGWCC 1 cut(s) 351
AxyI CCTNAGG 1 cut(s) 465
BbsI GAAGAC 1 cut(s) 474
BbvI GCAGC 1 cut(s) 117
BccI CCATC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 247
BfaI CTAG 3 cut(s) 16, 505, 514
BfmI CTRYAG 1 cut(s) 497
BglII AGATCT 1 cut(s) 563
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 247
Bme18I GGWCC 1 cut(s) 351
BmeRI GACNNNNNGTC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 351
BmrFI CCNGG 1 cut(s) 247
BmsI GCATC 2 cut(s) 48, 92
BpiI GAAGAC 1 cut(s) 474
BpmI CTGGAG 1 cut(s) 427
BsaJI CCNNGG 1 cut(s) 245
BsaWI WCCGGW 2 cut(s) 348, 365
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse1I ACTGG 3 cut(s) 263, 410, 588
Bse21I CCTNAGG 1 cut(s) 465
BseBI CCWGG 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 6 cut(s) 131, 448, 477, 479, 614, 628
BseNI ACTGG 3 cut(s) 263, 410, 588
BseXI GCAGC 1 cut(s) 117
BsiSI CCGG 2 cut(s) 349, 366
BslI CCNNNNNNNGG 1 cut(s) 337
Bsp143I GATC 4 cut(s) 295, 563, 575, 620
BspCNI CTCAG 6 cut(s) 130, 449, 478, 478, 613, 629
BspPI GGATC 1 cut(s) 290
BsrI ACTGG 3 cut(s) 263, 410, 588
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 4 cut(s) 295, 563, 575, 620
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 215
BstDEI CTNAG 8 cut(s) 117, 123, 223, 457, 465, 486, 600, 637
BstF5I GGATG 1 cut(s) 39
BstKTI GATC 4 cut(s) 298, 566, 578, 623
BstMBI GATC 4 cut(s) 295, 563, 575, 620
BstNI CCWGG 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 245
BstSFI CTRYAG 1 cut(s) 497
BstV1I GCAGC 1 cut(s) 117
BstV2I GAAGAC 1 cut(s) 474
BstX2I RGATCY 2 cut(s) 295, 563
BstYI RGATCY 2 cut(s) 295, 563
Bsu36I CCTNAGG 1 cut(s) 465
BtsCI GGATG 1 cut(s) 39
BtsI GCAGTG 1 cut(s) 110
BtsIMutI CAGTG 2 cut(s) 110, 527
Cfr13I GGNCC 1 cut(s) 351
Csp6I GTAC 1 cut(s) 208
CviAII CATG 1 cut(s) 149
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 8 cut(s) 117, 123, 223, 457, 465, 486, 600, 637
DpnI GATC 4 cut(s) 297, 565, 577, 622
DpnII GATC 4 cut(s) 295, 563, 575, 620
DriI GACNNNNNGTC 1 cut(s) 126
Eam1105I GACNNNNNGTC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 351
Eco81I CCTNAGG 1 cut(s) 465
EcoRII CCWGG 1 cut(s) 245
FaeI CATG 1 cut(s) 152
FatI CATG 1 cut(s) 148
FauNDI CATATG 1 cut(s) 595
Fnu4HI GCNGC 1 cut(s) 106
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 106
FspBI CTAG 3 cut(s) 16, 505, 514
GluI GCNGC 1 cut(s) 106
GsuI CTGGAG 1 cut(s) 427
HapII CCGG 2 cut(s) 349, 366
Hin1II CATG 1 cut(s) 152
HinfI GANTC 2 cut(s) 127, 262
HpaII CCGG 2 cut(s) 349, 366
HphI GGTGA 2 cut(s) 77, 260
Hpy188I TCNGA 5 cut(s) 120, 277, 487, 557, 603
Hpy188III TCNNGA 5 cut(s) 131, 456, 467, 567, 654
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 3 cut(s) 105, 164, 174
HpyF3I CTNAG 8 cut(s) 117, 123, 223, 457, 465, 486, 600, 637
Hsp92II CATG 1 cut(s) 152
Kzo9I GATC 4 cut(s) 295, 563, 575, 620
Lsp1109I GCAGC 1 cut(s) 117
LweI GCATC 2 cut(s) 48, 92
MaeI CTAG 3 cut(s) 16, 505, 514
MaeIII GTNAC 2 cut(s) 305, 320
MalI GATC 4 cut(s) 297, 565, 577, 622
MboI GATC 4 cut(s) 295, 563, 575, 620
MboII GAAGA 9 cut(s) 168, 290, 412, 474, 502, 570, 573, 642, 690
MflI RGATCY 2 cut(s) 295, 563
MluCI AATT 4 cut(s) 80, 198, 342, 641
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 5 cut(s) 126, 223, 276, 429, 474
MseI TTAA 1 cut(s) 541
MslI CAYNNNNRTG 2 cut(s) 44, 147
MspA1I CMGCKG 1 cut(s) 478
MspI CCGG 2 cut(s) 349, 366
MspR9I CCNGG 1 cut(s) 247
MvaI CCWGG 1 cut(s) 247
NdeI CATATG 1 cut(s) 595
NdeII GATC 4 cut(s) 295, 563, 575, 620
NlaIII CATG 1 cut(s) 152
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 1 cut(s) 107
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 245
PspGI CCWGG 1 cut(s) 245
PspPI GGNCC 1 cut(s) 351
PsuI RGATCY 2 cut(s) 295, 563
PvuII CAGCTG 1 cut(s) 478
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 2 cut(s) 44, 147
SaqAI TTAA 1 cut(s) 541
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 4 cut(s) 295, 563, 575, 620
Sau96I GGNCC 1 cut(s) 351
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 247
SfaNI GCATC 2 cut(s) 48, 92
SfcI CTRYAG 1 cut(s) 497
SinI GGWCC 1 cut(s) 351
SmiMI CAYNNNNRTG 2 cut(s) 44, 147
Sse9I AATT 4 cut(s) 80, 198, 342, 641
SspMI CTAG 3 cut(s) 16, 505, 514
StyD4I CCNGG 1 cut(s) 245
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 3 cut(s) 34, 427, 676
TasI AATT 4 cut(s) 80, 198, 342, 641
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 1 cut(s) 541
Tru9I TTAA 1 cut(s) 541
TscAI CASTG 2 cut(s) 117, 527
TseI GCWGC 1 cut(s) 105
TspDTI ATGAA 3 cut(s) 165, 331, 643
TspRI CASTG 2 cut(s) 117, 527
VpaK11BI GGWCC 1 cut(s) 351
XspI CTAG 3 cut(s) 16, 505, 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.