Rmu_sc0005362.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005362.1
OG0000976
Physical Location & Seq
Reverse (-)
12781 .. 13956
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005362.1_g000001.1.cds

Sequence Viewer

Length: 1035 bp
atgtgcaatcaagtggcatatttcaactgcttccccaacttctcaaccagcttgaaggatgcagcccactgtctccgactgagagtcaagacagatggcatatcaatgaaaaatgatatgcaagaattggcgatagtatacagaatatactataaactgatgagcactacagtagagccaaagacacgaatctccaacatccctggtcttactactggattcctcaccagtcagaagaaccattcacaacaaattcacaaggttacttggaatgagaatctcaggataaacaggaatcttctcagaagaagctacagcactagagaagctagtgtcagtggtacaaaacctactattgaagatcctatcactgaagaagaactggaagctgatctgaacagaccagtccagatgttcggagctgagaggctctctgatctttataaggaagctgagaattgcgaaaatcctgaacgattagaaaaactgatcgaagaaatgaaagaattcaaaatcagaaagacgagaaaagtctttccatatcaagatattgaaatggaagaaggagagagctccaagacttccatcgttcgagaaaagggaaaagtcaaactccctatacagaaggcccctacgggcagaaatggagaaagaaattctcaaaaatttgtcccagaggacaagatacccagagtaccaatttccaactatggaatttggctagatctggataaagccctagacaagagaaaaactcttgaccaatgggtagacagcctgatgatggcctctgctcttacccttggaaaatttgaagctcctgatcttcagatgtactttgaaactattctaaccggagtagcaaaaaagtattacttctctttcaaagagacagctagaggaaaagaatggctggaagaaataaaaacttcgaaatctccgtatgattttacagtacccctgtatgatcagttctgtggagatctctcaaatatgagtgaaaatgctaaagaaacggccaaatcaaatatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

344

Amino Acids

39.79

Weight (kDa)

8.38

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AccI GTMKAC 2 cut(s) 138, 771
AclWI GGATC 1 cut(s) 356
AcoI YGGCCR 1 cut(s) 1017
AcsI RAATTY 6 cut(s) 252, 506, 655, 665, 714, 809
AcuI CTGAAG 2 cut(s) 393, 812
AfaI GTAC 4 cut(s) 343, 696, 836, 957
AfiI CCNNNNNNNGG 1 cut(s) 784
AgsI TTSAA 8 cut(s) 25, 55, 359, 511, 554, 815, 842, 886
AhdI GACNNNNNGTC 1 cut(s) 83
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 9 cut(s) 51, 312, 329, 389, 422, 452, 573, 818, 896
AluI AGCT 9 cut(s) 51, 312, 329, 389, 422, 452, 573, 818, 896
Alw21I GWGCWC 2 cut(s) 167, 575
Alw26I GTCTC 2 cut(s) 77, 884
AlwI GGATC 1 cut(s) 356
AoxI GGCC 3 cut(s) 627, 786, 1017
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 6 cut(s) 252, 506, 655, 665, 714, 809
Asp700I GAANNNNTTC 2 cut(s) 506, 846
AspS9I GGNCC 1 cut(s) 628
AsuHPI GGTGA 1 cut(s) 217
AsuII TTCGAA 1 cut(s) 932
BanII GRGCYC 1 cut(s) 575
Bbv12I GWGCWC 2 cut(s) 167, 575
BbvI GCAGC 1 cut(s) 74
BccI CCATC 3 cut(s) 89, 593, 778
BceAI ACGGC 1 cut(s) 1032
BciT130I CCWGG 1 cut(s) 204
BclI TGATCA 1 cut(s) 967
BcoDI GTCTC 2 cut(s) 77, 884
BfaI CTAG 5 cut(s) 321, 330, 722, 740, 897
BfmI CTRYAG 2 cut(s) 168, 313
BglII AGATCT 2 cut(s) 724, 982
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 204
BmeRI GACNNNNNGTC 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 628
BmiI GGNNCC 1 cut(s) 630
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 49
BplI GAGNNNNNCTC 4 cut(s) 416, 448, 739, 771
Bpu14I TTCGAA 1 cut(s) 932
BsaJI CCNNGG 2 cut(s) 202, 802
BsaWI WCCGGW 1 cut(s) 854
Bsc4I CCNNNNNNNGG 1 cut(s) 784
Bse1I ACTGG 4 cut(s) 220, 228, 387, 404
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 2 cut(s) 202, 802
BseGI GGATG 2 cut(s) 64, 198
BseLI CCNNNNNNNGG 1 cut(s) 784
BseMII CTCAG 5 cut(s) 71, 295, 316, 414, 444
BseNI ACTGG 4 cut(s) 220, 228, 387, 404
BseXI GCAGC 1 cut(s) 74
BshFI GGCC 3 cut(s) 629, 788, 1019
BsiHKAI GWGCWC 2 cut(s) 167, 575
BsiSI CCGG 1 cut(s) 855
BslFI GGGAC 1 cut(s) 656
BslI CCNNNNNNNGG 1 cut(s) 784
BsmAI GTCTC 2 cut(s) 77, 884
BsmFI GGGAC 1 cut(s) 656
BsnI GGCC 3 cut(s) 629, 788, 1019
Bsp119I TTCGAA 1 cut(s) 932
Bsp1286I GDGCHC 2 cut(s) 167, 575
Bsp143I GATC 8 cut(s) 361, 391, 436, 489, 724, 823, 967, 982
BspANI GGCC 3 cut(s) 629, 788, 1019
BspCNI CTCAG 5 cut(s) 72, 294, 315, 415, 445
BspLI GGNNCC 1 cut(s) 630
BspPI GGATC 1 cut(s) 356
BspT104I TTCGAA 1 cut(s) 932
BsrI ACTGG 4 cut(s) 220, 228, 387, 404
BssECI CCNNGG 2 cut(s) 202, 802
BssMI GATC 8 cut(s) 361, 391, 436, 489, 724, 823, 967, 982
BssNAI GTATAC 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 802
Bst1107I GTATAC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 3 cut(s) 71, 172, 955
BstBI TTCGAA 1 cut(s) 932
BstDEI CTNAG 5 cut(s) 80, 281, 302, 423, 453
BstF5I GGATG 2 cut(s) 64, 198
BstKTI GATC 8 cut(s) 364, 394, 439, 492, 727, 826, 970, 985
BstMAI GTCTC 2 cut(s) 77, 884
BstMBI GATC 8 cut(s) 361, 391, 436, 489, 724, 823, 967, 982
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstSFI CTRYAG 2 cut(s) 168, 313
BstV1I GCAGC 1 cut(s) 74
BstX2I RGATCY 3 cut(s) 361, 724, 982
BstYI RGATCY 3 cut(s) 361, 724, 982
BstZ17I GTATAC 1 cut(s) 139
BsuRI GGCC 3 cut(s) 629, 788, 1019
BtsCI GGATG 2 cut(s) 64, 198
BtsIMutI CAGTG 3 cut(s) 67, 343, 369
Cfr13I GGNCC 1 cut(s) 628
Csp6I GTAC 4 cut(s) 342, 695, 835, 956
CviQI GTAC 4 cut(s) 342, 695, 835, 956
DdeI CTNAG 5 cut(s) 80, 281, 302, 423, 453
DpnI GATC 8 cut(s) 363, 393, 438, 491, 726, 825, 969, 984
DpnII GATC 8 cut(s) 361, 391, 436, 489, 724, 823, 967, 982
DriI GACNNNNNGTC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 1017
Eam1105I GACNNNNNGTC 1 cut(s) 83
Ecl136II GAGCTC 1 cut(s) 573
Eco130I CCWWGG 1 cut(s) 802
Eco24I GRGCYC 1 cut(s) 575
Eco53kI GAGCTC 1 cut(s) 573
Eco57I CTGAAG 2 cut(s) 393, 812
EcoICRI GAGCTC 1 cut(s) 573
EcoO109I RGGNCCY 1 cut(s) 628
EcoRI GAATTC 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 802
EcoT38I GRGCYC 1 cut(s) 575
ErhI CCWWGG 1 cut(s) 802
FalI AAGNNNNNCTT 2 cut(s) 860, 892
FaqI GGGAC 1 cut(s) 656
FbaI TGATCA 1 cut(s) 967
FblI GTMKAC 2 cut(s) 138, 771
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 2 cut(s) 71, 185
FriOI GRGCYC 1 cut(s) 575
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 5 cut(s) 321, 330, 722, 740, 897
GluI GCNGC 1 cut(s) 63
HaeIII GGCC 3 cut(s) 629, 788, 1019
HapII CCGG 1 cut(s) 855
HinfI GANTC 5 cut(s) 84, 189, 219, 277, 295
HpaII CCGG 1 cut(s) 855
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 2 cut(s) 139, 772
Hpy188I TCNGA 8 cut(s) 77, 234, 305, 396, 419, 436, 518, 831
Hpy188III TCNNGA 9 cut(s) 88, 283, 409, 470, 545, 593, 728, 758, 821
Hpy8I GTNNAC 2 cut(s) 139, 772
HpyAV CCTTC 3 cut(s) 49, 557, 619
HpyCH4III ACNGT 3 cut(s) 71, 172, 955
HpyCH4V TGCA 3 cut(s) 6, 62, 121
HpyF3I CTNAG 5 cut(s) 80, 281, 302, 423, 453
Ksp22I TGATCA 1 cut(s) 967
Kzo9I GATC 8 cut(s) 361, 391, 436, 489, 724, 823, 967, 982
LmnI GCTCC 3 cut(s) 419, 578, 823
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 1 cut(s) 49
MaeI CTAG 5 cut(s) 321, 330, 722, 740, 897
MaeIII GTNAC 1 cut(s) 262
MalI GATC 8 cut(s) 363, 393, 438, 491, 726, 825, 969, 984
MboI GATC 8 cut(s) 361, 391, 436, 489, 724, 823, 967, 982
MflI RGATCY 3 cut(s) 361, 724, 982
MhlI GDGCHC 2 cut(s) 167, 575
MluCI AATT 9 cut(s) 125, 252, 457, 506, 655, 665, 699, 714, 809
MlyI GAGTC 1 cut(s) 93
MmeI TCCRAC 3 cut(s) 100, 219, 729
MnlI CCTC 5 cut(s) 233, 420, 670, 799, 893
MroXI GAANNNNTTC 2 cut(s) 506, 846
MslI CAYNNNNRTG 1 cut(s) 104
MspI CCGG 1 cut(s) 855
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
NdeII GATC 8 cut(s) 361, 391, 436, 489, 724, 823, 967, 982
NlaIV GGNNCC 1 cut(s) 630
NspV TTCGAA 1 cut(s) 932
PcsI WCGNNNNNNNCGW 1 cut(s) 938
PdmI GAANNNNTTC 2 cut(s) 506, 846
PfeI GAWTC 4 cut(s) 189, 219, 277, 295
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PsiI TTATAA 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 575
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 630
PspPI GGNCC 1 cut(s) 628
PsrI GAACNNNNNNTAC 2 cut(s) 956, 988
PsuI RGATCY 3 cut(s) 361, 724, 982
RsaI GTAC 4 cut(s) 343, 696, 836, 957
RsaNI GTAC 4 cut(s) 342, 695, 835, 956
RseI CAYNNNNRTG 1 cut(s) 104
SacI GAGCTC 1 cut(s) 575
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 8 cut(s) 361, 391, 436, 489, 724, 823, 967, 982
Sau96I GGNCC 1 cut(s) 628
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 1 cut(s) 204
SduI GDGCHC 2 cut(s) 167, 575
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 2 cut(s) 168, 313
SfuI TTCGAA 1 cut(s) 932
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 9 cut(s) 125, 252, 457, 506, 655, 665, 699, 714, 809
SspMI CTAG 5 cut(s) 321, 330, 722, 740, 897
SstI GAGCTC 1 cut(s) 575
StyD4I CCNGG 1 cut(s) 202
StyI CCWWGG 1 cut(s) 802
TaaI ACNGT 3 cut(s) 71, 172, 955
TaqI TCGA 3 cut(s) 492, 592, 932
TasI AATT 9 cut(s) 125, 252, 457, 506, 655, 665, 699, 714, 809
TatI WGTACW 1 cut(s) 834
TfiI GAWTC 4 cut(s) 189, 219, 277, 295
TscAI CASTG 3 cut(s) 74, 343, 376
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 122, 515
TspGWI ACGGA 1 cut(s) 930
TspRI CASTG 3 cut(s) 74, 343, 376
XapI RAATTY 6 cut(s) 252, 506, 655, 665, 714, 809
XmiI GTMKAC 2 cut(s) 138, 771
XmnI GAANNNNTTC 2 cut(s) 506, 846
XspI CTAG 5 cut(s) 321, 330, 722, 740, 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.