RchiOBHm_Chr3g0487531

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
34729258 .. 34729693
436 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45196

Sequence Viewer

Length: 387 bp
ATGCCTAGAGTGCCAATTATGAACTATGGCATCTGGCTAAATCTAGACAAAGCTCTAGATAAAAGAAAAGCTATTGATCAATGGGTAGATAGCCTGATGATGTCCTCTGCTCTTACCCTTGGAAAATTTGAAGCACCAGATCTTCAGGTGTACTATGAAACTACTCTCACTGGAGTAGCTAAAAAGTACTATCTGTCTTTCAAAGAGACTGCCAGAGGAAGGGACTGGCTAGAAGAAATTCAAAATTCAAAATCTCCGTATGATTTTGCTGTACCCCTGTACAATCAGTTCTGTGAAGATCTCTCAAATCTGAGTGAGAAGACTAAAGAAACGGCCAAATCAAATATCTATGCTCTCAAAATTTTTGACATGCATGAGATATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.94

Weight (kDa)

5.42

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 333
AcsI RAATTY 4 cut(s) 125, 237, 244, 360
AcuI CTGAAG 1 cut(s) 128
AfaI GTAC 4 cut(s) 152, 188, 273, 281
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 4 cut(s) 131, 202, 242, 249
AluBI AGCT 3 cut(s) 53, 71, 179
AluI AGCT 3 cut(s) 53, 71, 179
Alw26I GTCTC 1 cut(s) 200
AoxI GGCC 1 cut(s) 333
ApoI RAATTY 4 cut(s) 125, 237, 244, 360
Asp700I GAANNNNTTC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 326
BceAI ACGGC 1 cut(s) 348
BclI TGATCA 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 4 cut(s) 6, 44, 56, 230
BglII AGATCT 2 cut(s) 139, 298
BmcAI AGTACT 1 cut(s) 188
BmsI GCATC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 326
BpmI CTGGAG 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse1I ACTGG 2 cut(s) 175, 230
BseDI CCNNGG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 2 cut(s) 175, 230
BshFI GGCC 1 cut(s) 335
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 1 cut(s) 335
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 3 cut(s) 76, 139, 298
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 1 cut(s) 303
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 2 cut(s) 175, 230
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 3 cut(s) 76, 139, 298
BssT1I CCWWGG 1 cut(s) 118
BstAUI TGTACA 1 cut(s) 279
BstDEI CTNAG 1 cut(s) 311
BstKTI GATC 3 cut(s) 79, 142, 301
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 3 cut(s) 76, 139, 298
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 373
BstV2I GAAGAC 1 cut(s) 326
BstX2I RGATCY 2 cut(s) 139, 298
BstYI RGATCY 2 cut(s) 139, 298
BsuRI GGCC 1 cut(s) 335
BtsIMutI CAGTG 1 cut(s) 168
Csp6I GTAC 4 cut(s) 151, 187, 272, 280
CviAII CATG 2 cut(s) 370, 374
CviJI RGCY 7 cut(s) 37, 53, 71, 93, 179, 229, 335
CviKI_1 RGCY 7 cut(s) 37, 53, 71, 93, 179, 229, 335
CviQI GTAC 4 cut(s) 151, 187, 272, 280
DdeI CTNAG 1 cut(s) 311
DpnI GATC 3 cut(s) 78, 141, 300
DpnII GATC 3 cut(s) 76, 139, 298
EaeI YGGCCR 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 118
EcoT22I ATGCAT 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 2 cut(s) 373, 377
FaiI YATR 7 cut(s) 20, 27, 156, 261, 351, 371, 375
FaqI GGGAC 1 cut(s) 236
FatI CATG 2 cut(s) 369, 373
FbaI TGATCA 1 cut(s) 76
FspBI CTAG 4 cut(s) 6, 44, 56, 230
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 335
Hin1II CATG 2 cut(s) 373, 377
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 2 cut(s) 44, 56
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 1 cut(s) 213
HpyCH4V TGCA 1 cut(s) 373
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 311
Hsp92II CATG 2 cut(s) 373, 377
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 3 cut(s) 76, 139, 298
LpnPI CCDG 8 cut(s) 19, 107, 131, 150, 156, 211, 226, 290
LweI GCATC 1 cut(s) 39
MaeI CTAG 4 cut(s) 6, 44, 56, 230
MalI GATC 3 cut(s) 78, 141, 300
MboI GATC 3 cut(s) 76, 139, 298
MboII GAAGA 4 cut(s) 134, 245, 308, 331
MflI RGATCY 2 cut(s) 139, 298
MluCI AATT 5 cut(s) 15, 125, 237, 244, 360
MnlI CCTC 2 cut(s) 115, 209
Mph1103I ATGCAT 1 cut(s) 375
MroXI GAANNNNTTC 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 3 cut(s) 76, 139, 298
NlaIII CATG 2 cut(s) 373, 377
NsiI ATGCAT 1 cut(s) 375
NspI RCATGY 1 cut(s) 373
PdmI GAANNNNTTC 1 cut(s) 237
PsrI GAACNNNNNNTAC 2 cut(s) 272, 304
PsuI RGATCY 2 cut(s) 139, 298
RsaI GTAC 4 cut(s) 152, 188, 273, 281
RsaNI GTAC 4 cut(s) 151, 187, 272, 280
Sau3AI GATC 3 cut(s) 76, 139, 298
ScaI AGTACT 1 cut(s) 188
SetI ASST 4 cut(s) 55, 73, 150, 181
SfaNI GCATC 1 cut(s) 39
Sse9I AATT 5 cut(s) 15, 125, 237, 244, 360
SspMI CTAG 4 cut(s) 6, 44, 56, 230
StyI CCWWGG 1 cut(s) 118
TasI AATT 5 cut(s) 15, 125, 237, 244, 360
TatI WGTACW 3 cut(s) 150, 186, 279
TscAI CASTG 1 cut(s) 175
TspDTI ATGAA 2 cut(s) 35, 171
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 1 cut(s) 175
XapI RAATTY 4 cut(s) 125, 237, 244, 360
XbaI TCTAGA 2 cut(s) 43, 55
XceI RCATGY 1 cut(s) 373
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 4 cut(s) 6, 44, 56, 230
ZrmI AGTACT 1 cut(s) 188
Zsp2I ATGCAT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.