RchiOBHm_Chr5g0034781

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000976
Physical Location & Seq
Reverse (-)
28674283 .. 28675825
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31374

Sequence Viewer

Length: 366 bp
ATGGAAGAAGGAGAAAACTCCAAAACAACTTTCATTACTAGAGAAAAGGAAAAACCAAAAATCCCTGTAAAGAAAGCACTTACAGGTAGAGAAAGAGAAAGAAACTCTCAAAGATTTGTCCTAGAAGACAATCTGCCTAGAATACCAATTTTCAATTATGGTATCTGGCTAAATCTAGACCAAGCTCTAAATAAAAGAAAAACTATTGACCAATGGGTTAATAGCCTTATGATGACTTCTGCGCTTACCATTGGTAAATTCGAAGCACCAGATCTACAGGTATATTATGTAACTATCCTTACTGGAGTAGCAAAGAAATACTATTTCTCTTTCAAAGAAACAAAAAGAGGAAGAGAATGGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

14.31

Weight (kDa)

9.69

Isoelectric Point (pI)

24.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 364
AcsI RAATTY 1 cut(s) 257
AgsI TTSAA 2 cut(s) 154, 334
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 1 cut(s) 244
AsuII TTCGAA 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 132
BfaI CTAG 4 cut(s) 39, 122, 138, 176
BfmI CTRYAG 1 cut(s) 275
BglII AGATCT 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 324
Bpu14I TTCGAA 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 307
BseNI ACTGG 1 cut(s) 307
Bsp119I TTCGAA 1 cut(s) 261
Bsp143I GATC 1 cut(s) 271
BspT104I TTCGAA 1 cut(s) 261
BsrI ACTGG 1 cut(s) 307
BssMI GATC 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 346
BstBI TTCGAA 1 cut(s) 261
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 1 cut(s) 274
BstMBI GATC 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 275
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
CfoI GCGC 1 cut(s) 244
CviJI RGCY 3 cut(s) 169, 185, 225
CviKI_1 RGCY 3 cut(s) 169, 185, 225
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
FaiI YATR 5 cut(s) 159, 230, 283, 288, 364
FspBI CTAG 4 cut(s) 39, 122, 138, 176
GlaI GCGC 1 cut(s) 243
GsuI CTGGAG 1 cut(s) 324
HhaI GCGC 1 cut(s) 244
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
Hpy188III TCNNGA 1 cut(s) 176
HspAI GCGC 1 cut(s) 242
Kzo9I GATC 1 cut(s) 271
LpnPI CCDG 6 cut(s) 69, 78, 151, 263, 282, 288
MaeI CTAG 4 cut(s) 39, 122, 138, 176
MaeIII GTNAC 1 cut(s) 289
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 3 cut(s) 17, 137, 363
MflI RGATCY 1 cut(s) 271
MluCI AATT 3 cut(s) 147, 154, 257
MnlI CCTC 1 cut(s) 341
MseI TTAA 1 cut(s) 219
NdeII GATC 1 cut(s) 271
NspV TTCGAA 1 cut(s) 261
PsiI TTATAA 1 cut(s) 364
PsuI RGATCY 1 cut(s) 271
SaqAI TTAA 1 cut(s) 219
Sau3AI GATC 1 cut(s) 271
SetI ASST 3 cut(s) 88, 187, 282
SfcI CTRYAG 1 cut(s) 275
SfuI TTCGAA 1 cut(s) 261
Sse9I AATT 3 cut(s) 147, 154, 257
SspMI CTAG 4 cut(s) 39, 122, 138, 176
TaqI TCGA 1 cut(s) 261
TasI AATT 3 cut(s) 147, 154, 257
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TspDTI ATGAA 1 cut(s) 22
XapI RAATTY 1 cut(s) 257
XbaI TCTAGA 1 cut(s) 175
XspI CTAG 4 cut(s) 39, 122, 138, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.