Rmu_sc0002521.1_g000031

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002521.1
OG0000976
Physical Location & Seq
Reverse (-)
100406 .. 101272
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002521.1_g000031.1.cds

Sequence Viewer

Length: 867 bp
atgcaagaactggcaatagtatacagaatatactataaactgatgagtaccacagtagaaccaaagacaacaatatcaaatattccaggtcttactactgggttcctcaccaaccagaagaaccattcacaacagattcgcaaggttacttggaatgaagtaacttttcctattgaatggaaattgtctagaccgaaaaaaccagcagaaaatgccaaagcggcaatatatgaaagtagaaagactggagatatcagtctaagatttgacgatcacagaaaaagtgacgtctgtcctgagaatatcagaataaacaacaactttcttagaagaagttacagcactagagaagctagtgttagtgataccaaatactttgaaaaaccatcagagtctatcactgaagaagatttagaagctgatctgaacagaccagtcaatatgcttagagcacaaaagctctatgatctatatgatgaaggagaaagctgcgaaaatcctgaacgattagaaaaactaatcgaagaaatgaaaaggttcaaaccaggaaaggaaagaaaactccttccctatcaggatattgaaatggaagatggagaaggctccaatagcaaaacgttcatcacaagagagaaaggaaaagtaaaacttccttttcagaaagcccctacgagcaaaaatggagaaagaaattctcaaagatttatcccagaggacaatatacctagaataccaatttccacccatggaatttggctaaatctagacaaagctctagataagagaaaaactcttgaccaatgggttgatagcctgatgatggcttctgctctaacccttggaaaatttgaagcaccagatctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

288

Amino Acids

33.44

Weight (kDa)

8.61

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 291
AccI GTMKAC 1 cut(s) 21
AciI CCGC 1 cut(s) 221
AclI AACGTT 1 cut(s) 617
AcsI RAATTY 3 cut(s) 691, 750, 845
AcuI CTGAAG 1 cut(s) 423
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 820
AgsI TTSAA 5 cut(s) 176, 380, 541, 584, 851
AjnI CCWGG 2 cut(s) 85, 544
AluBI AGCT 5 cut(s) 353, 419, 460, 489, 773
AluI AGCT 5 cut(s) 353, 419, 460, 489, 773
Alw21I GWGCWC 1 cut(s) 454
ApeKI GCWGC 1 cut(s) 489
ApoI RAATTY 3 cut(s) 691, 750, 845
Asp700I GAANNNNTTC 1 cut(s) 536
AsuHPI GGTGA 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 454
BbvI GCAGC 1 cut(s) 476
BccI CCATC 3 cut(s) 394, 587, 814
BciT130I CCWGG 2 cut(s) 87, 546
BfaI CTAG 6 cut(s) 189, 345, 354, 726, 764, 776
BglI GCCNNNNNGGC 1 cut(s) 221
BglII AGATCT 1 cut(s) 859
BisI GCNGC 2 cut(s) 222, 490
BlsI GCNGC 2 cut(s) 223, 491
Bme1390I CCNGG 2 cut(s) 87, 546
BmiI GGNNCC 2 cut(s) 104, 604
BmrFI CCNGG 2 cut(s) 87, 546
BmrI ACTGGG 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 108
BoxI GACNNNNGTC 1 cut(s) 291
BplI GAGNNNNNCTC 2 cut(s) 775, 807
BpmI CTGGAG 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 745, 838
Bsc4I CCNNNNNNNGG 1 cut(s) 820
Bse1I ACTGG 4 cut(s) 15, 103, 250, 434
BseBI CCWGG 2 cut(s) 87, 546
BseDI CCNNGG 2 cut(s) 745, 838
BseLI CCNNNNNNNGG 1 cut(s) 820
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 4 cut(s) 15, 103, 250, 434
BseXI GCAGC 1 cut(s) 476
BsiHKAI GWGCWC 1 cut(s) 454
BslI CCNNNNNNNGG 1 cut(s) 820
Bsp1286I GDGCHC 1 cut(s) 454
Bsp143I GATC 4 cut(s) 271, 421, 466, 859
Bsp19I CCATGG 1 cut(s) 745
BspACI CCGC 1 cut(s) 221
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 104, 604
BsrI ACTGG 4 cut(s) 15, 103, 250, 434
BssECI CCNNGG 2 cut(s) 745, 838
BssMI GATC 4 cut(s) 271, 421, 466, 859
BssNAI GTATAC 1 cut(s) 22
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 2 cut(s) 745, 838
Bst1107I GTATAC 1 cut(s) 22
Bst2UI CCWGG 2 cut(s) 87, 546
Bst4CI ACNGT 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 288
BstAPI GCANNNNNTGC 1 cut(s) 212
BstDEI CTNAG 4 cut(s) 260, 297, 326, 446
BstDSI CCRYGG 1 cut(s) 745
BstKTI GATC 4 cut(s) 274, 424, 469, 862
BstMBI GATC 4 cut(s) 271, 421, 466, 859
BstMWI GCNNNNNNNGC 3 cut(s) 212, 221, 609
BstNI CCWGG 2 cut(s) 87, 546
BstPAI GACNNNNGTC 1 cut(s) 291
BstSCI CCNGG 2 cut(s) 85, 544
BstV1I GCAGC 1 cut(s) 476
BstX2I RGATCY 1 cut(s) 859
BstYI RGATCY 1 cut(s) 859
BstZ17I GTATAC 1 cut(s) 22
BtgI CCRYGG 1 cut(s) 745
BtsIMutI CAGTG 1 cut(s) 399
Csp6I GTAC 1 cut(s) 48
CviAII CATG 1 cut(s) 746
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 4 cut(s) 260, 297, 326, 446
DpnI GATC 4 cut(s) 273, 423, 468, 861
DpnII GATC 4 cut(s) 271, 421, 466, 859
Eco130I CCWWGG 2 cut(s) 745, 838
Eco32I GATATC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 423
EcoRII CCWGG 2 cut(s) 85, 544
EcoRV GATATC 1 cut(s) 253
EcoT14I CCWWGG 2 cut(s) 745, 838
ErhI CCWWGG 2 cut(s) 745, 838
FaeI CATG 1 cut(s) 749
FalI AAGNNNNNCTT 2 cut(s) 633, 665
FatI CATG 1 cut(s) 745
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 222, 490
Fsp4HI GCNGC 2 cut(s) 222, 490
FspBI CTAG 6 cut(s) 189, 345, 354, 726, 764, 776
GluI GCNGC 2 cut(s) 222, 490
GsuI CTGGAG 1 cut(s) 267
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 1 cut(s) 749
HinfI GANTC 2 cut(s) 136, 392
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 4 cut(s) 308, 391, 426, 660
Hpy188III TCNNGA 7 cut(s) 189, 296, 500, 575, 764, 776, 794
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 3 cut(s) 473, 575, 593
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 2 cut(s) 288, 617
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 221, 609
HpyF3I CTNAG 4 cut(s) 260, 297, 326, 446
HpySE526I ACGT 2 cut(s) 288, 617
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 1 cut(s) 749
Kzo9I GATC 4 cut(s) 271, 421, 466, 859
LmnI GCTCC 1 cut(s) 608
Lsp1109I GCAGC 1 cut(s) 476
MaeI CTAG 6 cut(s) 189, 345, 354, 726, 764, 776
MaeII ACGT 2 cut(s) 288, 617
MaeIII GTNAC 4 cut(s) 145, 160, 284, 335
MalI GATC 4 cut(s) 273, 423, 468, 861
MboI GATC 4 cut(s) 271, 421, 466, 859
MboII GAAGA 6 cut(s) 130, 342, 416, 419, 536, 602
MflI RGATCY 1 cut(s) 859
MhlI GDGCHC 1 cut(s) 454
MluCI AATT 5 cut(s) 182, 691, 735, 750, 845
MlyI GAGTC 1 cut(s) 401
MnlI CCTC 2 cut(s) 116, 706
MroXI GAANNNNTTC 1 cut(s) 536
MspR9I CCNGG 2 cut(s) 87, 546
MvaI CCWGG 2 cut(s) 87, 546
MwoI GCNNNNNNNGC 3 cut(s) 212, 221, 609
NcoI CCATGG 1 cut(s) 745
NdeII GATC 4 cut(s) 271, 421, 466, 859
NlaIII CATG 1 cut(s) 749
NlaIV GGNNCC 2 cut(s) 104, 604
NmuCI GTSAC 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 536
PfeI GAWTC 1 cut(s) 136
PkrI GCNGC 2 cut(s) 223, 491
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
PshAI GACNNNNGTC 1 cut(s) 291
Psp1406I AACGTT 1 cut(s) 617
Psp6I CCWGG 2 cut(s) 85, 544
PspGI CCWGG 2 cut(s) 85, 544
PspN4I GGNNCC 2 cut(s) 104, 604
PsuI RGATCY 1 cut(s) 859
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
SatI GCNGC 2 cut(s) 222, 490
Sau3AI GATC 4 cut(s) 271, 421, 466, 859
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 2 cut(s) 87, 546
SduI GDGCHC 1 cut(s) 454
Sse9I AATT 5 cut(s) 182, 691, 735, 750, 845
SsiI CCGC 1 cut(s) 221
SspI AATATT 1 cut(s) 82
SspMI CTAG 6 cut(s) 189, 345, 354, 726, 764, 776
StyD4I CCNGG 2 cut(s) 85, 544
StyI CCWWGG 2 cut(s) 745, 838
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 2 cut(s) 291, 620
TaqI TCGA 1 cut(s) 522
TaqII GACCGA 1 cut(s) 208
TasI AATT 5 cut(s) 182, 691, 735, 750, 845
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 1 cut(s) 136
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 1 cut(s) 489
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 5 cut(s) 171, 246, 492, 545, 610
TspRI CASTG 1 cut(s) 406
XapI RAATTY 3 cut(s) 691, 750, 845
XbaI TCTAGA 3 cut(s) 188, 763, 775
XmiI GTMKAC 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 536
XspI CTAG 6 cut(s) 189, 345, 354, 726, 764, 776
ZraI GACGTC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.