Rmu_sc0011015.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011015.1
OG0000976
Physical Location & Seq
Reverse (-)
698 .. 1498
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011015.1_g000002.1.cds

Sequence Viewer

Length: 801 bp
ctgagaagaagctacagcaccagagaagccggtgctagtggtacaaaacccactactgaagagtcaatatcagaagaagatctggaagctgatctatgcagaccagtctatatgctcagagctgagaggctctatgatctttacaaagaagctgagaattgtgaaagtcctgaacgattagaaaaactaatcgaggaaatgaaagaattcaaatgcagaaagacaagaaaagtctttccttaccaagatgttgaaatggaagaaggaggaagctccagaactttcataaaaaaagaaacaagggaaatgaaactcccagttcagaaagcccccacgggtaaaaaaggagaaagaaattctcaaaggttcgtccccgaggacaatctgcccagagttcctatcactaactatggaatctggctgaatctagacaagagtctagacaagagaaaaaccattgaccaatgggtagatagcctgatgatggcttctgcactgacccttggaaaatttgaagcaccagatttgcaggtgtactatgaaactactctcaccggagtggcaaaaaagtactacctatccttcaaagaaactgccagaggaagagactggcttgaagaaataaaaaattcaaagctccctgaaccatggagaacagctgtgagagaaagcatagctgagaaaccaattgaaagattttcagttggaggaattgctgacagaatacggcaattactgaaggagcaatgcaaagccaatcttagagctttcaggaatattactgtacaattggtgaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

30.96

Weight (kDa)

8.86

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 520
Acc36I ACCTGC 1 cut(s) 520
AcsI RAATTY 4 cut(s) 206, 355, 509, 628
AcuI CTGAAG 2 cut(s) 78, 758
AfaI GTAC 4 cut(s) 43, 536, 572, 786
AfiI CCNNNNNNNGG 1 cut(s) 484
AgsI TTSAA 7 cut(s) 211, 254, 515, 586, 617, 633, 692
AleI CACNNNNGTG 1 cut(s) 557
AluBI AGCT 9 cut(s) 12, 89, 122, 152, 273, 637, 659, 677, 767
AluI AGCT 9 cut(s) 12, 89, 122, 152, 273, 637, 659, 677, 767
Alw26I GTCTC 1 cut(s) 600
Ama87I CYCGRG 1 cut(s) 374
ApoI RAATTY 4 cut(s) 206, 355, 509, 628
Asp700I GAANNNNTTC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 544
AvaI CYCGRG 1 cut(s) 374
BccI CCATC 1 cut(s) 478
BceAI ACGGC 1 cut(s) 743
BcoDI GTCTC 1 cut(s) 600
BfaI CTAG 4 cut(s) 36, 428, 440, 799
BfmI CTRYAG 1 cut(s) 13
BfuAI ACCTGC 1 cut(s) 520
BglII AGATCT 1 cut(s) 79
BmcAI AGTACT 1 cut(s) 572
BmeT110I CYCGRG 1 cut(s) 374
BmrI ACTGGG 1 cut(s) 311
BmuI ACTGGG 1 cut(s) 311
BoxI GACNNNNGTC 1 cut(s) 435
BpmI CTGGAG 1 cut(s) 259
BsaJI CCNNGG 4 cut(s) 333, 375, 502, 647
BsaWI WCCGGW 1 cut(s) 554
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 3 cut(s) 104, 317, 614
Bse3DI GCAATG 1 cut(s) 752
BseDI CCNNGG 4 cut(s) 333, 375, 502, 647
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMI GCAATG 1 cut(s) 752
BseMII CTCAG 4 cut(s) 114, 130, 144, 669
BseNI ACTGG 3 cut(s) 104, 317, 614
BsgI GTGCAG 1 cut(s) 477
BsiHKCI CYCGRG 1 cut(s) 374
BsiSI CCGG 2 cut(s) 30, 555
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 484
BsmAI GTCTC 1 cut(s) 600
BsmFI GGGAC 1 cut(s) 356
BsoBI CYCGRG 1 cut(s) 374
Bsp1407I TGTACA 1 cut(s) 784
Bsp143I GATC 3 cut(s) 79, 91, 136
Bsp19I CCATGG 1 cut(s) 647
BspCNI CTCAG 4 cut(s) 115, 129, 145, 670
BspMI ACCTGC 1 cut(s) 520
BsrDI GCAATG 1 cut(s) 752
BsrFI RCCGGY 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 784
BsrI ACTGG 3 cut(s) 104, 317, 614
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 4 cut(s) 333, 375, 502, 647
BssMI GATC 3 cut(s) 79, 91, 136
BssT1I CCWWGG 2 cut(s) 502, 647
Bst4CI ACNGT 1 cut(s) 784
Bst6I CTCTTC 2 cut(s) 54, 598
BstAUI TGTACA 1 cut(s) 784
BstDEI CTNAG 6 cut(s) 2, 116, 123, 153, 678, 761
BstDSI CCRYGG 2 cut(s) 333, 647
BstKTI GATC 3 cut(s) 82, 94, 139
BstMAI GTCTC 1 cut(s) 600
BstMBI GATC 3 cut(s) 79, 91, 136
BstPAI GACNNNNGTC 1 cut(s) 435
BstSFI CTRYAG 1 cut(s) 13
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BtgI CCRYGG 2 cut(s) 333, 647
BtsIMutI CAGTG 1 cut(s) 494
BveI ACCTGC 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 29
Csp6I GTAC 4 cut(s) 42, 535, 571, 785
CviAII CATG 1 cut(s) 648
CviQI GTAC 4 cut(s) 42, 535, 571, 785
DdeI CTNAG 6 cut(s) 2, 116, 123, 153, 678, 761
DpnI GATC 3 cut(s) 81, 93, 138
DpnII GATC 3 cut(s) 79, 91, 136
Eam1104I CTCTTC 2 cut(s) 54, 598
EarI CTCTTC 2 cut(s) 54, 598
Eco130I CCWWGG 2 cut(s) 502, 647
Eco57I CTGAAG 2 cut(s) 78, 758
Eco88I CYCGRG 1 cut(s) 374
EcoRI GAATTC 1 cut(s) 206
EcoT14I CCWWGG 2 cut(s) 502, 647
ErhI CCWWGG 2 cut(s) 502, 647
FaeI CATG 1 cut(s) 651
FaiI YATR 9 cut(s) 97, 111, 113, 135, 287, 411, 540, 649, 674
FalI AAGNNNNNCTT 2 cut(s) 744, 776
FaqI GGGAC 1 cut(s) 356
FatI CATG 1 cut(s) 647
FspBI CTAG 4 cut(s) 36, 428, 440, 799
GsuI CTGGAG 1 cut(s) 259
HapII CCGG 2 cut(s) 30, 555
Hin1II CATG 1 cut(s) 651
HinfI GANTC 4 cut(s) 62, 414, 424, 436
HpaII CCGG 2 cut(s) 30, 555
HphI GGTGA 1 cut(s) 544
Hpy166II GTNNAC 2 cut(s) 535, 796
Hpy188I TCNGA 3 cut(s) 73, 119, 324
Hpy188III TCNNGA 6 cut(s) 83, 170, 276, 428, 440, 772
Hpy8I GTNNAC 2 cut(s) 535, 796
HpyAV CCTTC 3 cut(s) 257, 592, 733
HpyCH4III ACNGT 1 cut(s) 784
HpyCH4V TGCA 5 cut(s) 99, 216, 494, 529, 750
HpyF3I CTNAG 6 cut(s) 2, 116, 123, 153, 678, 761
Hsp92II CATG 1 cut(s) 651
Kzo9I GATC 3 cut(s) 79, 91, 136
LmnI GCTCC 3 cut(s) 278, 642, 742
MaeI CTAG 4 cut(s) 36, 428, 440, 799
MalI GATC 3 cut(s) 81, 93, 138
MboI GATC 3 cut(s) 79, 91, 136
MboII GAAGA 7 cut(s) 18, 71, 86, 89, 272, 615, 629
MfeI CAATTG 2 cut(s) 687, 788
MflI RGATCY 1 cut(s) 79
MluCI AATT 9 cut(s) 157, 206, 355, 509, 628, 687, 711, 731, 788
MlyI GAGTC 2 cut(s) 71, 445
MmeI TCCRAC 1 cut(s) 685
MnlI CCTC 6 cut(s) 120, 187, 260, 370, 593, 701
MroXI GAANNNNTTC 1 cut(s) 206
MslI CAYNNNNRTG 1 cut(s) 557
MspA1I CMGCKG 1 cut(s) 659
MspI CCGG 2 cut(s) 30, 555
MunI CAATTG 2 cut(s) 687, 788
NcoI CCATGG 1 cut(s) 647
NdeII GATC 3 cut(s) 79, 91, 136
NlaIII CATG 1 cut(s) 651
OliI CACNNNNGTG 1 cut(s) 557
PaqCI CACCTGC 1 cut(s) 520
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 414, 424
PleI GAGTC 2 cut(s) 70, 444
PpsI GAGTC 2 cut(s) 70, 444
PshAI GACNNNNGTC 1 cut(s) 435
PsuI RGATCY 1 cut(s) 79
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 4 cut(s) 43, 536, 572, 786
RsaNI GTAC 4 cut(s) 42, 535, 571, 785
RseI CAYNNNNRTG 1 cut(s) 557
Sau3AI GATC 3 cut(s) 79, 91, 136
ScaI AGTACT 1 cut(s) 572
SchI GAGTC 2 cut(s) 71, 445
SfcI CTRYAG 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 557
Sse9I AATT 9 cut(s) 157, 206, 355, 509, 628, 687, 711, 731, 788
SspI AATATT 1 cut(s) 778
SspMI CTAG 4 cut(s) 36, 428, 440, 799
StyI CCWWGG 2 cut(s) 502, 647
TaaI ACNGT 1 cut(s) 784
TaqI TCGA 1 cut(s) 192
TasI AATT 9 cut(s) 157, 206, 355, 509, 628, 687, 711, 731, 788
TatI WGTACW 3 cut(s) 534, 570, 784
TfiI GAWTC 2 cut(s) 414, 424
TscAI CASTG 1 cut(s) 501
TspDTI ATGAA 4 cut(s) 215, 274, 323, 555
TspRI CASTG 1 cut(s) 501
XapI RAATTY 4 cut(s) 206, 355, 509, 628
XbaI TCTAGA 2 cut(s) 427, 439
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 4 cut(s) 36, 428, 440, 799
ZrmI AGTACT 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.