Rmu_sc0004846.1_g000001

Viral movement protein (MP)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004846.1
OG0000976
Physical Location & Seq
Forward (+)
1 .. 422
422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004846.1_g000001.1.cds

Sequence Viewer

Length: 305 bp
acaacagactggcagattttcaagctagtttgctgggaactctagaagcatctctgtgcaatcaagtggcatatttcaattgcttcccaaacttctcaaccagcttgaaggatgcagcccactgtctccgactgagagtcaagacagatggcacatcaatgaaaaatgatatgcaagaattggcgatagtatacataatatactataaactgatgagcaccacagtagagccaaagacacggatctccaacatccctggtcttactgctggattcctcaccagtcagaagaaccattcacaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MP

Protein Analysis

100

Amino Acids

11.17

Weight (kDa)

8.89

Isoelectric Point (pI)

23.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 191
AclWI GGATC 1 cut(s) 250
AgsI TTSAA 3 cut(s) 22, 78, 108
AhdI GACNNNNNGTC 1 cut(s) 136
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 2 cut(s) 25, 104
AluI AGCT 2 cut(s) 25, 104
Alw21I GWGCWC 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 2 cut(s) 26, 43
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 257
BmeRI GACNNNNNGTC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 257
BmsI GCATC 2 cut(s) 58, 102
BsaJI CCNNGG 1 cut(s) 255
Bse1I ACTGG 2 cut(s) 14, 281
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 2 cut(s) 117, 251
BseMII CTCAG 1 cut(s) 124
BseNI ACTGG 2 cut(s) 14, 281
BseXI GCAGC 1 cut(s) 127
BseYI CCCAGC 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 242
BspCNI CTCAG 1 cut(s) 125
BspPI GGATC 1 cut(s) 250
BsrI ACTGG 2 cut(s) 14, 281
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 1 cut(s) 242
BssNAI GTATAC 1 cut(s) 192
Bst1107I GTATAC 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 2 cut(s) 124, 225
BstDEI CTNAG 1 cut(s) 133
BstF5I GGATG 2 cut(s) 117, 251
BstKTI GATC 1 cut(s) 245
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BstZ17I GTATAC 1 cut(s) 192
BtsCI GGATG 2 cut(s) 117, 251
BtsIMutI CAGTG 1 cut(s) 120
CviJI RGCY 4 cut(s) 25, 104, 118, 231
CviKI_1 RGCY 4 cut(s) 25, 104, 118, 231
DdeI CTNAG 1 cut(s) 133
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
DriI GACNNNNNGTC 1 cut(s) 136
Eam1105I GACNNNNNGTC 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 255
FaiI YATR 6 cut(s) 72, 172, 192, 196, 201, 206
FblI GTMKAC 1 cut(s) 191
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 2 cut(s) 124, 238
Fsp4HI GCNGC 1 cut(s) 116
FspBI CTAG 2 cut(s) 26, 43
GluI GCNGC 1 cut(s) 116
GsaI CCCAGC 1 cut(s) 37
HinfI GANTC 2 cut(s) 137, 272
HphI GGTGA 1 cut(s) 270
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 2 cut(s) 130, 287
Hpy188III TCNNGA 2 cut(s) 43, 141
Hpy8I GTNNAC 1 cut(s) 192
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 2 cut(s) 124, 225
HpyCH4V TGCA 3 cut(s) 59, 115, 174
HpyF3I CTNAG 1 cut(s) 133
Kzo9I GATC 1 cut(s) 242
LpnPI CCDG 6 cut(s) 19, 114, 242, 254, 269, 294
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 2 cut(s) 58, 102
MaeI CTAG 2 cut(s) 26, 43
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MboII GAAGA 1 cut(s) 300
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 2 cut(s) 78, 178
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 2 cut(s) 153, 272
MnlI CCTC 1 cut(s) 286
MslI CAYNNNNRTG 2 cut(s) 54, 157
MspR9I CCNGG 1 cut(s) 257
MunI CAATTG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 257
NdeII GATC 1 cut(s) 242
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 1 cut(s) 117
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 33
PspGI CCWGG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 242
RseI CAYNNNNRTG 2 cut(s) 54, 157
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 1 cut(s) 242
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 257
SduI GDGCHC 1 cut(s) 220
SetI ASST 2 cut(s) 27, 106
SfaNI GCATC 2 cut(s) 58, 102
SmiMI CAYNNNNRTG 2 cut(s) 54, 157
Sse9I AATT 2 cut(s) 78, 178
SspMI CTAG 2 cut(s) 26, 43
StyD4I CCNGG 1 cut(s) 255
TaaI ACNGT 2 cut(s) 124, 225
TasI AATT 2 cut(s) 78, 178
TfiI GAWTC 1 cut(s) 272
TscAI CASTG 1 cut(s) 127
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 175
TspGWI ACGGA 1 cut(s) 255
TspRI CASTG 1 cut(s) 127
XbaI TCTAGA 1 cut(s) 42
XmiI GTMKAC 1 cut(s) 191
XspI CTAG 2 cut(s) 26, 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.