Rmu_sc0000429.1_g000090

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000429.1
OG0000976
Physical Location & Seq
Forward (+)
425598 .. 426653
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000429.1_g000090.1.cds

Sequence Viewer

Length: 1056 bp
atgaaaagtatactgaatgacaagaaagtgcctacagtaaaatcaaagaaagctaatggatttaaaccattagaaaaacctgagaagaatcatgttccaaacatgatttttcttggaccttctactagtcaaactagtattcggtatgaaaatccgaaagatacaagagatgtcaaaatgatgagcatctttgggaaaaagaaaggagtacaactcctaaatgctgaagagttcgaatacaatgaaatcgaacatgaggtaaaaaacgcctcaattccaaagttagatttcaaacaaatctataaaaggggaacgtttgatctgatggatagccatcacttcaaattacttgaatttacaaccccctctacaacgggagaaaccgatctactgatgatcactcctgcagaagttgccagagcaagaataaaaaattatcaatttatgcatattggagcagtccaagttggcataaaacgttcagttctatgtgtcttccaagacaatagactaacagattttcaagctattctgttgggaacccttgaggcatctctatgcaatcaagtggcatatttcaactgcttcccaaatttctcaaacagcttgaaagatgcagttcactgtctaagactgagagtcaagacagatggcatatcaatgaaaaaagatatgcaagaactggctatagtatacagaatatactataaattgatgagtaccgcggtagaacctaaaaccaggatatcgaatattccaggtcttaccactggtttcctcaccagccagaagaatcattcacagcagatccacaaggttacttggaatgaagtgactttccctattgaatggaaattgtctggtccgaaaaaaccagcagaaaatgccaaagcggcaatttatgaaagcagaaagactggagatatcagtctaaaattcgacgatcacagaaaaagtgacgtctgtcatgaaaatatcaggataaacaacaatcttctaagaagaagttacagcactagagaagctagtgttagtggtaccaaatactctgaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

351

Amino Acids

40.14

Weight (kDa)

9.48

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 963
Acc65I GGTACC 1 cut(s) 1037
AccB1I GGYRCC 1 cut(s) 1037
AccI GTMKAC 2 cut(s) 10, 693
AccII CGCG 1 cut(s) 725
AciI CCGC 3 cut(s) 723, 725, 893
AclI AACGTT 2 cut(s) 314, 478
AclWI GGATC 1 cut(s) 802
AcsI RAATTY 3 cut(s) 353, 592, 935
AcuI CTGAAG 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 960
AfaI GTAC 3 cut(s) 210, 721, 1039
AgsI TTSAA 7 cut(s) 292, 343, 353, 524, 580, 610, 848
AhdI GACNNNNNGTC 1 cut(s) 638
AhlI ACTAGT 2 cut(s) 125, 134
AjnI CCWGG 2 cut(s) 740, 757
AluBI AGCT 4 cut(s) 53, 527, 606, 1025
AluI AGCT 4 cut(s) 53, 527, 606, 1025
AlwI GGATC 1 cut(s) 802
ApoI RAATTY 3 cut(s) 353, 592, 935
Asp718I GGTACC 1 cut(s) 1037
AspS9I GGNCC 2 cut(s) 116, 863
AsuHPI GGTGA 1 cut(s) 772
AsuII TTCGAA 1 cut(s) 234
AvaII GGWCC 2 cut(s) 116, 863
BanI GGYRCC 1 cut(s) 1037
BbsI GAAGAC 1 cut(s) 487
BccI CCATC 3 cut(s) 319, 342, 644
BciT130I CCWGG 2 cut(s) 742, 759
BclI TGATCA 1 cut(s) 396
BcuI ACTAGT 2 cut(s) 125, 134
BfaI CTAG 4 cut(s) 126, 135, 1017, 1026
BfmI CTRYAG 3 cut(s) 33, 405, 687
BglI GCCNNNNNGGC 1 cut(s) 893
BisI GCNGC 1 cut(s) 894
BlsI GCNGC 1 cut(s) 895
Bme1390I CCNGG 2 cut(s) 742, 759
Bme18I GGWCC 2 cut(s) 116, 863
BmeRI GACNNNNNGTC 1 cut(s) 638
BmgT120I GGNCC 2 cut(s) 116, 863
BmiI GGNNCC 2 cut(s) 541, 1039
BmrFI CCNGG 2 cut(s) 742, 759
BmsI GCATC 3 cut(s) 195, 560, 604
BoxI GACNNNNGTC 1 cut(s) 963
BpiI GAAGAC 1 cut(s) 487
BplI GAGNNNNNCTC 2 cut(s) 198, 230
BpmI CTGGAG 1 cut(s) 939
Bpu14I TTCGAA 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 566
BsaBI GATNNNNATC 2 cut(s) 185, 333
BsaHI GRCGYC 1 cut(s) 960
BsaJI CCNNGG 1 cut(s) 723
Bse1I ACTGG 3 cut(s) 687, 775, 922
Bse8I GATNNNNATC 2 cut(s) 185, 333
BseBI CCWGG 2 cut(s) 742, 759
BseDI CCNNGG 1 cut(s) 723
BseJI GATNNNNATC 2 cut(s) 185, 333
BseMII CTCAG 2 cut(s) 72, 626
BseNI ACTGG 3 cut(s) 687, 775, 922
Bsh1236I CGCG 1 cut(s) 725
BshNI GGYRCC 1 cut(s) 1037
Bsp119I TTCGAA 1 cut(s) 234
Bsp143I GATC 5 cut(s) 319, 385, 396, 807, 943
BspACI CCGC 3 cut(s) 723, 725, 893
BspCNI CTCAG 2 cut(s) 73, 627
BspFNI CGCG 1 cut(s) 725
BspHI TCATGA 1 cut(s) 967
BspLI GGNNCC 2 cut(s) 541, 1039
BspMAI CTGCAG 1 cut(s) 409
BspPI GGATC 1 cut(s) 802
BspT104I TTCGAA 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 1037
BsrI ACTGG 3 cut(s) 687, 775, 922
BssECI CCNNGG 1 cut(s) 723
BssMI GATC 5 cut(s) 319, 385, 396, 807, 943
BssNAI GTATAC 2 cut(s) 11, 694
BssNI GRCGYC 1 cut(s) 960
Bst1107I GTATAC 2 cut(s) 11, 694
Bst2UI CCWGG 2 cut(s) 742, 759
Bst4CI ACNGT 2 cut(s) 37, 626
Bst6I CTCTTC 1 cut(s) 222
BstACI GRCGYC 1 cut(s) 960
BstAPI GCANNNNNTGC 2 cut(s) 413, 884
BstBI TTCGAA 1 cut(s) 234
BstDEI CTNAG 4 cut(s) 81, 629, 635, 998
BstDSI CCRYGG 1 cut(s) 723
BstFNI CGCG 1 cut(s) 725
BstKTI GATC 5 cut(s) 322, 388, 399, 810, 946
BstMBI GATC 5 cut(s) 319, 385, 396, 807, 943
BstMWI GCNNNNNNNGC 3 cut(s) 413, 884, 893
BstNI CCWGG 2 cut(s) 742, 759
BstPAI GACNNNNGTC 1 cut(s) 963
BstSCI CCNGG 2 cut(s) 740, 757
BstSFI CTRYAG 3 cut(s) 33, 405, 687
BstUI CGCG 1 cut(s) 725
BstV2I GAAGAC 1 cut(s) 487
BstX2I RGATCY 1 cut(s) 807
BstYI RGATCY 1 cut(s) 807
BstZ17I GTATAC 2 cut(s) 11, 694
BtgI CCRYGG 1 cut(s) 723
BtsIMutI CAGTG 2 cut(s) 622, 768
CciI TCATGA 1 cut(s) 967
Cfr13I GGNCC 2 cut(s) 116, 863
Cfr42I CCGCGG 1 cut(s) 726
Csp6I GTAC 3 cut(s) 209, 720, 1038
CviAII CATG 4 cut(s) 92, 103, 254, 968
CviJI RGCY 7 cut(s) 53, 333, 527, 606, 686, 786, 1025
CviKI_1 RGCY 7 cut(s) 53, 333, 527, 606, 686, 786, 1025
CviQI GTAC 3 cut(s) 209, 720, 1038
DdeI CTNAG 4 cut(s) 81, 629, 635, 998
DpnI GATC 5 cut(s) 321, 387, 398, 809, 945
DpnII GATC 5 cut(s) 319, 385, 396, 807, 943
DraI TTTAAA 1 cut(s) 64
DriI GACNNNNNGTC 1 cut(s) 638
Eam1104I CTCTTC 1 cut(s) 222
Eam1105I GACNNNNNGTC 1 cut(s) 638
EarI CTCTTC 1 cut(s) 222
Eco32I GATATC 2 cut(s) 747, 925
Eco47I GGWCC 2 cut(s) 116, 863
Eco57I CTGAAG 1 cut(s) 246
EcoRII CCWGG 2 cut(s) 740, 757
EcoRV GATATC 2 cut(s) 747, 925
EcoT22I ATGCAT 1 cut(s) 450
FaeI CATG 4 cut(s) 95, 106, 257, 971
FatI CATG 4 cut(s) 91, 102, 253, 967
FbaI TGATCA 1 cut(s) 396
FblI GTMKAC 2 cut(s) 10, 693
Fnu4HI GCNGC 1 cut(s) 894
Fsp4HI GCNGC 1 cut(s) 894
FspBI CTAG 4 cut(s) 126, 135, 1017, 1026
GluI GCNGC 1 cut(s) 894
GsuI CTGGAG 1 cut(s) 939
Hin1I GRCGYC 1 cut(s) 960
Hin1II CATG 4 cut(s) 95, 106, 257, 971
HinfI GANTC 3 cut(s) 88, 639, 793
HphI GGTGA 1 cut(s) 772
Hpy166II GTNNAC 3 cut(s) 11, 622, 694
Hpy188I TCNGA 4 cut(s) 156, 324, 867, 1051
Hpy188III TCNNGA 3 cut(s) 643, 968, 979
Hpy8I GTNNAC 3 cut(s) 11, 622, 694
Hpy99I CGWCG 1 cut(s) 944
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 2 cut(s) 37, 626
HpyCH4IV ACGT 3 cut(s) 314, 478, 960
HpyCH4V TGCA 5 cut(s) 407, 448, 561, 617, 676
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 884, 893
HpyF3I CTNAG 4 cut(s) 81, 629, 635, 998
HpySE526I ACGT 3 cut(s) 314, 478, 960
Hsp92I GRCGYC 1 cut(s) 960
Hsp92II CATG 4 cut(s) 95, 106, 257, 971
KpnI GGTACC 1 cut(s) 1041
Ksp22I TGATCA 1 cut(s) 396
KspI CCGCGG 1 cut(s) 726
Kzo9I GATC 5 cut(s) 319, 385, 396, 807, 943
LmnI GCTCC 1 cut(s) 455
LweI GCATC 3 cut(s) 195, 560, 604
MaeI CTAG 4 cut(s) 126, 135, 1017, 1026
MaeII ACGT 3 cut(s) 314, 478, 960
MaeIII GTNAC 4 cut(s) 817, 832, 956, 1007
MalI GATC 5 cut(s) 321, 387, 398, 809, 945
MboI GATC 5 cut(s) 319, 385, 396, 807, 943
MboII GAAGA 6 cut(s) 97, 239, 487, 802, 986, 1014
MflI RGATCY 1 cut(s) 807
MlyI GAGTC 1 cut(s) 648
MnlI CCTC 5 cut(s) 250, 280, 376, 541, 788
Mph1103I ATGCAT 1 cut(s) 450
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 2 cut(s) 556, 659
MspA1I CMGCKG 1 cut(s) 725
MspR9I CCNGG 2 cut(s) 742, 759
MvaI CCWGG 2 cut(s) 742, 759
MvnI CGCG 1 cut(s) 725
MwoI GCNNNNNNNGC 3 cut(s) 413, 884, 893
NdeII GATC 5 cut(s) 319, 385, 396, 807, 943
NlaIII CATG 4 cut(s) 95, 106, 257, 971
NlaIV GGNNCC 2 cut(s) 541, 1039
NmuCI GTSAC 2 cut(s) 832, 956
NsiI ATGCAT 1 cut(s) 450
NspV TTCGAA 1 cut(s) 234
PagI TCATGA 1 cut(s) 967
PfeI GAWTC 2 cut(s) 88, 793
PkrI GCNGC 1 cut(s) 895
PleI GAGTC 1 cut(s) 647
PpsI GAGTC 1 cut(s) 647
PshAI GACNNNNGTC 1 cut(s) 963
Psp1406I AACGTT 2 cut(s) 314, 478
Psp6I CCWGG 2 cut(s) 740, 757
PspGI CCWGG 2 cut(s) 740, 757
PspN4I GGNNCC 2 cut(s) 541, 1039
PspPI GGNCC 2 cut(s) 116, 863
PstI CTGCAG 1 cut(s) 409
PsuI RGATCY 1 cut(s) 807
RsaI GTAC 3 cut(s) 210, 721, 1039
RsaNI GTAC 3 cut(s) 209, 720, 1038
RseI CAYNNNNRTG 2 cut(s) 556, 659
SacII CCGCGG 1 cut(s) 726
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 894
Sau3AI GATC 5 cut(s) 319, 385, 396, 807, 943
Sau96I GGNCC 2 cut(s) 116, 863
SchI GAGTC 1 cut(s) 648
ScrFI CCNGG 2 cut(s) 742, 759
SfaNI GCATC 3 cut(s) 195, 560, 604
SfcI CTRYAG 3 cut(s) 33, 405, 687
Sfr303I CCGCGG 1 cut(s) 726
SfuI TTCGAA 1 cut(s) 234
SgrBI CCGCGG 1 cut(s) 726
SinI GGWCC 2 cut(s) 116, 863
SmiMI CAYNNNNRTG 2 cut(s) 556, 659
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
SpeI ACTAGT 2 cut(s) 125, 134
SsiI CCGC 3 cut(s) 723, 725, 893
SspI AATATT 1 cut(s) 754
SspMI CTAG 4 cut(s) 126, 135, 1017, 1026
StyD4I CCNGG 2 cut(s) 740, 757
TaaI ACNGT 2 cut(s) 37, 626
TaiI ACGT 3 cut(s) 317, 481, 963
TaqI TCGA 4 cut(s) 234, 249, 749, 939
TatI WGTACW 1 cut(s) 208
TauI GCSGC 1 cut(s) 896
TfiI GAWTC 2 cut(s) 88, 793
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 2 cut(s) 629, 775
TseFI GTSAC 2 cut(s) 832, 956
Tsp45I GTSAC 2 cut(s) 832, 956
TspDTI ATGAA 7 cut(s) 17, 162, 258, 677, 843, 918, 984
TspRI CASTG 2 cut(s) 629, 775
VpaK11BI GGWCC 2 cut(s) 116, 863
XapI RAATTY 3 cut(s) 353, 592, 935
XmiI GTMKAC 2 cut(s) 10, 693
XspI CTAG 4 cut(s) 126, 135, 1017, 1026
ZraI GACGTC 1 cut(s) 961
Zsp2I ATGCAT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.