Rmu_sc0000144.1_g000006

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000144.1
OG0000976
Physical Location & Seq
Forward (+)
27302 .. 28914
1613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000144.1_g000006.1.cds

Sequence Viewer

Length: 1044 bp
atgcctacagtaaaaccaaagaaagctaatggattcaaaccattagaaaaacccgagaagaatcctgttccaaacatgatttttcttggaccatctactagtcaaactagtattcagtatgaaaacctgaaaaatacaagagatgtcaaaatgatgagcatctccgggaaaaagaaaggagtacaactcctcaatgctgaagaattcgaattcaacgaaatcgaacatgagcagattcacaaggtttcttggaatgaagtaacttttcctattgaatggaaattatctggtccgaaaaaaccagcagagaataccaaagcggcagtatatgaaagtagaaagactggagatatcagtctaaaattcgacgatcacagaaaaagtgacgtctgtcttgaaaatatcaggataaataacaatcttcttagaagaagctacaacactagagaagctagtgttagtggtaccaaattctctgttgaagaaccaacagagcctatcactgaagaagaattggaagctgatctaaacagaccagtaaatatgcttagagcacaaaagctctatgatctctgtgatgaagcagaactctgcaaagatcctgaacgattagaaaaactaatcaaaaaaatgaaaaatttcaagccaggaaaggaaagaaaactccttccttatcaggatattgaaatggaagaaggagaaagctccaaaacttccatcattagagaaaagggaaaagtaaaactctccacacagaaagcccctacgggcaaaactggagaaagaaattctcaaaaaaatttcctagaagacaatatatccagagtaccaatttcctctcatggtatctggttaaatctagacaaaactctagacaagagaaaaactcttgaccaatgggttgatagcctgatgatggcctttgctctaacccttggaaaatttgaagcaccagatcttcaggtgtactatgaaactactctcaccggagtagcaaaaaagtattacttctctttcaaagagactgctagaggaaaagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

347

Amino Acids

39.89

Weight (kDa)

8.88

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 390
Acc65I GGTACC 1 cut(s) 464
AccB1I GGYRCC 1 cut(s) 464
AciI CCGC 1 cut(s) 320
AclWI GGATC 1 cut(s) 593
AcsI RAATTY 8 cut(s) 203, 209, 362, 470, 637, 787, 799, 941
AcuI CTGAAG 3 cut(s) 219, 525, 944
AcyI GRCGYC 1 cut(s) 387
AfaI GTAC 4 cut(s) 183, 466, 828, 968
AfiI CCNNNNNNNGG 1 cut(s) 916
AgsI TTSAA 9 cut(s) 37, 214, 275, 398, 482, 643, 686, 947, 1018
AhlI ACTAGT 2 cut(s) 98, 107
AjnI CCWGG 1 cut(s) 646
AluBI AGCT 6 cut(s) 26, 435, 452, 521, 562, 705
AluI AGCT 6 cut(s) 26, 435, 452, 521, 562, 705
Alw21I GWGCWC 1 cut(s) 556
Alw26I GTCTC 1 cut(s) 1016
AlwI GGATC 1 cut(s) 593
Ama87I CYCGRG 1 cut(s) 53
AoxI GGCC 1 cut(s) 918
ApoI RAATTY 8 cut(s) 203, 209, 362, 470, 637, 787, 799, 941
Asp700I GAANNNNTTC 1 cut(s) 638
Asp718I GGTACC 1 cut(s) 464
AspS9I GGNCC 2 cut(s) 89, 290
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 976
AsuII TTCGAA 1 cut(s) 207
AvaI CYCGRG 1 cut(s) 53
AvaII GGWCC 2 cut(s) 89, 290
BanI GGYRCC 1 cut(s) 464
BbsI GAAGAC 1 cut(s) 816
Bbv12I GWGCWC 1 cut(s) 556
BccI CCATC 3 cut(s) 100, 725, 910
BciT130I CCWGG 1 cut(s) 648
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 1016
BcuI ACTAGT 2 cut(s) 98, 107
BfaI CTAG 9 cut(s) 99, 108, 444, 453, 806, 860, 872, 1029, 1042
BfmI CTRYAG 1 cut(s) 6
BglII AGATCT 1 cut(s) 955
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme1390I CCNGG 2 cut(s) 166, 648
Bme18I GGWCC 2 cut(s) 89, 290
BmeT110I CYCGRG 1 cut(s) 53
BmgT120I GGNCC 2 cut(s) 89, 290
BmiI GGNNCC 1 cut(s) 466
BmrFI CCNGG 2 cut(s) 166, 648
BmsI GCATC 1 cut(s) 168
BoxI GACNNNNGTC 1 cut(s) 390
BpiI GAAGAC 1 cut(s) 816
BplI GAGNNNNNCTC 4 cut(s) 171, 203, 871, 903
BpmI CTGGAG 2 cut(s) 366, 798
Bpu14I TTCGAA 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 166
BsaBI GATNNNNATC 1 cut(s) 158
BsaHI GRCGYC 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 934
BsaWI WCCGGW 1 cut(s) 986
Bsc4I CCNNNNNNNGG 1 cut(s) 916
Bse1I ACTGG 3 cut(s) 349, 536, 781
Bse8I GATNNNNATC 1 cut(s) 158
BseBI CCWGG 1 cut(s) 648
BseDI CCNNGG 1 cut(s) 934
BseJI GATNNNNATC 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 916
BseNI ACTGG 3 cut(s) 349, 536, 781
BseRI GAGGAG 1 cut(s) 179
BshFI GGCC 1 cut(s) 920
BshNI GGYRCC 1 cut(s) 464
BsiHKAI GWGCWC 1 cut(s) 556
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 2 cut(s) 165, 987
BslI CCNNNNNNNGG 1 cut(s) 916
BsmAI GTCTC 1 cut(s) 1016
BsnI GGCC 1 cut(s) 920
BsoBI CYCGRG 1 cut(s) 53
Bsp119I TTCGAA 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 556
Bsp143I GATC 5 cut(s) 370, 523, 568, 598, 955
BspACI CCGC 1 cut(s) 320
BspANI GGCC 1 cut(s) 920
BspLI GGNNCC 1 cut(s) 466
BspPI GGATC 1 cut(s) 593
BspT104I TTCGAA 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 464
BsrI ACTGG 3 cut(s) 349, 536, 781
BssECI CCNNGG 1 cut(s) 934
BssMI GATC 5 cut(s) 370, 523, 568, 598, 955
BssNI GRCGYC 1 cut(s) 387
BssT1I CCWWGG 1 cut(s) 934
Bst2UI CCWGG 1 cut(s) 648
Bst4CI ACNGT 1 cut(s) 10
BstACI GRCGYC 1 cut(s) 387
BstBI TTCGAA 1 cut(s) 207
BstDEI CTNAG 2 cut(s) 425, 548
BstKTI GATC 5 cut(s) 373, 526, 571, 601, 958
BstMAI GTCTC 1 cut(s) 1016
BstMBI GATC 5 cut(s) 370, 523, 568, 598, 955
BstNI CCWGG 1 cut(s) 648
BstPAI GACNNNNGTC 1 cut(s) 390
BstSCI CCNGG 2 cut(s) 164, 646
BstSFI CTRYAG 1 cut(s) 6
BstV2I GAAGAC 1 cut(s) 816
BstX2I RGATCY 2 cut(s) 598, 955
BstYI RGATCY 2 cut(s) 598, 955
BsuRI GGCC 1 cut(s) 920
BtsIMutI CAGTG 1 cut(s) 501
Cfr13I GGNCC 2 cut(s) 89, 290
Csp6I GTAC 4 cut(s) 182, 465, 827, 967
CviAII CATG 3 cut(s) 76, 227, 842
CviQI GTAC 4 cut(s) 182, 465, 827, 967
DdeI CTNAG 2 cut(s) 425, 548
DpnI GATC 5 cut(s) 372, 525, 570, 600, 957
DpnII GATC 5 cut(s) 370, 523, 568, 598, 955
Eco130I CCWWGG 1 cut(s) 934
Eco32I GATATC 1 cut(s) 352
Eco47I GGWCC 2 cut(s) 89, 290
Eco57I CTGAAG 3 cut(s) 219, 525, 944
Eco88I CYCGRG 1 cut(s) 53
EcoRI GAATTC 2 cut(s) 203, 209
EcoRII CCWGG 1 cut(s) 646
EcoRV GATATC 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 934
ErhI CCWWGG 1 cut(s) 934
FaeI CATG 3 cut(s) 79, 230, 845
FalI AAGNNNNNCTT 2 cut(s) 992, 1024
FatI CATG 3 cut(s) 75, 226, 841
Fnu4HI GCNGC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 9 cut(s) 99, 108, 444, 453, 806, 860, 872, 1029, 1042
GluI GCNGC 1 cut(s) 321
GsuI CTGGAG 2 cut(s) 366, 798
HaeIII GGCC 1 cut(s) 920
HapII CCGG 2 cut(s) 165, 987
Hin1I GRCGYC 1 cut(s) 387
Hin1II CATG 3 cut(s) 79, 230, 845
HinfI GANTC 3 cut(s) 33, 61, 235
HpaII CCGG 2 cut(s) 165, 987
HphI GGTGA 1 cut(s) 976
Hpy166II GTNNAC 1 cut(s) 967
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 8 cut(s) 395, 406, 602, 677, 822, 860, 872, 890
Hpy8I GTNNAC 1 cut(s) 967
Hpy99I CGWCG 1 cut(s) 371
HpyAV CCTTC 2 cut(s) 677, 689
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 1 cut(s) 594
HpyF3I CTNAG 2 cut(s) 425, 548
HpySE526I ACGT 1 cut(s) 387
Hsp92I GRCGYC 1 cut(s) 387
Hsp92II CATG 3 cut(s) 79, 230, 845
KpnI GGTACC 1 cut(s) 468
Kzo9I GATC 5 cut(s) 370, 523, 568, 598, 955
LmnI GCTCC 1 cut(s) 710
LweI GCATC 1 cut(s) 168
MaeI CTAG 9 cut(s) 99, 108, 444, 453, 806, 860, 872, 1029, 1042
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 2 cut(s) 259, 383
MalI GATC 5 cut(s) 372, 525, 570, 600, 957
MboI GATC 5 cut(s) 370, 523, 568, 598, 955
MflI RGATCY 2 cut(s) 598, 955
MhlI GDGCHC 1 cut(s) 556
MnlI CCTC 3 cut(s) 200, 847, 1025
MroXI GAANNNNTTC 1 cut(s) 638
MseI TTAA 1 cut(s) 854
MspI CCGG 2 cut(s) 165, 987
MspR9I CCNGG 2 cut(s) 166, 648
MvaI CCWGG 1 cut(s) 648
NciI CCSGG 1 cut(s) 166
NdeII GATC 5 cut(s) 370, 523, 568, 598, 955
NlaIII CATG 3 cut(s) 79, 230, 845
NlaIV GGNNCC 1 cut(s) 466
NmuCI GTSAC 1 cut(s) 383
NspV TTCGAA 1 cut(s) 207
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 638
PfeI GAWTC 3 cut(s) 33, 61, 235
PfoI TCCNGGA 1 cut(s) 164
PkrI GCNGC 1 cut(s) 322
PshAI GACNNNNGTC 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 646
PspGI CCWGG 1 cut(s) 646
PspN4I GGNNCC 1 cut(s) 466
PspPI GGNCC 2 cut(s) 89, 290
PsuI RGATCY 2 cut(s) 598, 955
RsaI GTAC 4 cut(s) 183, 466, 828, 968
RsaNI GTAC 4 cut(s) 182, 465, 827, 967
SaqAI TTAA 1 cut(s) 854
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 5 cut(s) 370, 523, 568, 598, 955
Sau96I GGNCC 2 cut(s) 89, 290
ScrFI CCNGG 2 cut(s) 166, 648
SduI GDGCHC 1 cut(s) 556
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 207
SinI GGWCC 2 cut(s) 89, 290
SpeI ACTAGT 2 cut(s) 98, 107
SsiI CCGC 1 cut(s) 320
SspMI CTAG 9 cut(s) 99, 108, 444, 453, 806, 860, 872, 1029, 1042
StyD4I CCNGG 2 cut(s) 164, 646
StyI CCWWGG 1 cut(s) 934
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 390
TaqI TCGA 3 cut(s) 207, 222, 366
TatI WGTACW 2 cut(s) 181, 966
TauI GCSGC 1 cut(s) 323
TfiI GAWTC 3 cut(s) 33, 61, 235
Tru1I TTAA 1 cut(s) 854
Tru9I TTAA 1 cut(s) 854
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 1 cut(s) 383
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 6 cut(s) 135, 270, 345, 594, 647, 987
TspRI CASTG 1 cut(s) 508
VpaK11BI GGWCC 2 cut(s) 89, 290
XapI RAATTY 8 cut(s) 203, 209, 362, 470, 637, 787, 799, 941
XbaI TCTAGA 2 cut(s) 859, 871
XmnI GAANNNNTTC 1 cut(s) 638
XspI CTAG 9 cut(s) 99, 108, 444, 453, 806, 860, 872, 1029, 1042
ZraI GACGTC 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.