Rmu_sc0001407.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001407.1
OG0000976
Physical Location & Seq
Forward (+)
29198 .. 29773
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001407.1_g000004.1.cds

Sequence Viewer

Length: 576 bp
atgttcagagcagaaaggctctatgaactctatgaagaagcagaaacttgcaaaaatcctgaaatattagaaaaacaaatcgaagaaatggaagagttcaaaatcagaaagacgagaatagtctttccatatcaagatattgaaatggaagaaggagaaagctccagaactttcattagcagagaaaaagggaaaataaaactcccacttcagaaagcccacacgggtaaaaaaggggaaagaaattcccaaagatttgtcccagaggacaatacgcctagagttccaatcacaaactatggcatctggctaaatctagacaagagtctagacaaaagaaaagccattgaccaatgggtagatagcctgatgatggcttctgcactcacccttggaaaatttgaagcaccagatttgcaggtgtactatgaaactactcttactggattagcaaaaaagtattatctgtctttcaaagaaactgccagaggaagagactggcttgaagaaatcaaaaattcaaagtctccatatgattttgcagtacccatgtatgatcagttcttgtatgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

22.64

Weight (kDa)

5.51

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 409
Acc36I ACCTGC 1 cut(s) 409
AcsI RAATTY 3 cut(s) 244, 398, 517
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 2 cut(s) 425, 546
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 6 cut(s) 100, 143, 404, 475, 506, 522
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
Alw26I GTCTC 2 cut(s) 489, 531
ApoI RAATTY 3 cut(s) 244, 398, 517
AsuHPI GGTGA 1 cut(s) 379
BccI CCATC 1 cut(s) 367
BclI TGATCA 1 cut(s) 556
BcoDI GTCTC 2 cut(s) 489, 531
BfaI CTAG 3 cut(s) 279, 317, 329
BfuAI ACCTGC 1 cut(s) 409
BmsI GCATC 1 cut(s) 312
BoxI GACNNNNGTC 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 391
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 2 cut(s) 448, 503
BseDI CCNNGG 1 cut(s) 391
BseLI CCNNNNNNNGG 1 cut(s) 373
BseNI ACTGG 2 cut(s) 448, 503
BsgI GTGCAG 1 cut(s) 366
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 2 cut(s) 489, 531
BsmFI GGGAC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 556
BspMI ACCTGC 1 cut(s) 409
BsrI ACTGG 2 cut(s) 448, 503
BssECI CCNNGG 1 cut(s) 391
BssMI GATC 1 cut(s) 556
BssT1I CCWWGG 1 cut(s) 391
Bst6I CTCTTC 2 cut(s) 87, 487
BstKTI GATC 1 cut(s) 559
BstMAI GTCTC 2 cut(s) 489, 531
BstMBI GATC 1 cut(s) 556
BstPAI GACNNNNGTC 1 cut(s) 324
BveI ACCTGC 1 cut(s) 409
Csp6I GTAC 2 cut(s) 424, 545
CviAII CATG 1 cut(s) 550
CviJI RGCY 8 cut(s) 19, 162, 218, 310, 344, 366, 377, 502
CviKI_1 RGCY 8 cut(s) 19, 162, 218, 310, 344, 366, 377, 502
CviQI GTAC 2 cut(s) 424, 545
DpnI GATC 1 cut(s) 558
DpnII GATC 1 cut(s) 556
Eam1104I CTCTTC 2 cut(s) 87, 487
EarI CTCTTC 2 cut(s) 87, 487
Eco130I CCWWGG 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 391
FaeI CATG 1 cut(s) 553
FaqI GGGAC 1 cut(s) 245
FatI CATG 1 cut(s) 549
FauNDI CATATG 1 cut(s) 532
FbaI TGATCA 1 cut(s) 556
FspBI CTAG 3 cut(s) 279, 317, 329
GsuI CTGGAG 1 cut(s) 148
Hin1II CATG 1 cut(s) 553
HinfI GANTC 1 cut(s) 325
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 3 cut(s) 8, 107, 213
Hpy188III TCNNGA 5 cut(s) 59, 134, 165, 317, 329
Hpy8I GTNNAC 1 cut(s) 424
HpyAV CCTTC 1 cut(s) 146
HpyCH4V TGCA 4 cut(s) 51, 383, 418, 542
Hsp92II CATG 1 cut(s) 553
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 1 cut(s) 556
LmnI GCTCC 1 cut(s) 167
LweI GCATC 1 cut(s) 312
MaeI CTAG 3 cut(s) 279, 317, 329
MalI GATC 1 cut(s) 558
MboI GATC 1 cut(s) 556
MboII GAAGA 6 cut(s) 47, 95, 104, 161, 504, 518
MluCI AATT 3 cut(s) 244, 398, 517
MlyI GAGTC 1 cut(s) 334
MnlI CCTC 2 cut(s) 259, 482
NdeI CATATG 1 cut(s) 532
NdeII GATC 1 cut(s) 556
NlaIII CATG 1 cut(s) 553
PaqCI CACCTGC 1 cut(s) 409
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
PshAI GACNNNNGTC 1 cut(s) 324
PsrI GAACNNNNNNTAC 1 cut(s) 545
RsaI GTAC 2 cut(s) 425, 546
RsaNI GTAC 2 cut(s) 424, 545
Sau3AI GATC 1 cut(s) 556
SchI GAGTC 1 cut(s) 334
SetI ASST 2 cut(s) 164, 423
SfaNI GCATC 1 cut(s) 312
Sse9I AATT 3 cut(s) 244, 398, 517
SspI AATATT 1 cut(s) 66
SspMI CTAG 3 cut(s) 279, 317, 329
StyI CCWWGG 1 cut(s) 391
TaqI TCGA 1 cut(s) 81
TasI AATT 3 cut(s) 244, 398, 517
TatI WGTACW 1 cut(s) 423
TspDTI ATGAA 4 cut(s) 39, 48, 163, 444
XapI RAATTY 3 cut(s) 244, 398, 517
XbaI TCTAGA 2 cut(s) 316, 328
XspI CTAG 3 cut(s) 279, 317, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.