Rmu_sc0006968.1_g000011

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006968.1
OG0000976
Physical Location & Seq
Reverse (-)
38315 .. 45273
6959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006968.1_g000011.1.cds

Sequence Viewer

Length: 1293 bp
atgatctacactcattttgaatcatttgatatgaataagtggaaggcgtattttgagttcttggtggagatattgttgcagcaaaattggagcatcctagtcttctcaagagctgactgtcagtgccaccaaaccctctatcaatatgcttcggtcctagtctcctcgggagccgactgtagtaccgcgaccacaacggttacggaaccagctaagcaaggtcgctcaaaagaagtcaggtcaagggacatccccgacgacagcacccgaacgcctcagagatacctcgacgaagtctctgagattgttgacggagaggccaaacttccattcgatttgaacgtcgtcgttgtcgtctctctctctctctatcttgcagattccgacgatccaacgaacgtcatgatctgcatctcaccggtctcgacaataggtttcgatcgacctattgggaccaaacaacaaatgaggctctgcaaccggcgatgggtttgcaaccggagaaaaccgacgttcgaagaaagatgtctatttggggcaataaccatttccggtgaggttttcaaaaaagtccggtgggcggcggctgacgactggattccggcaaccagtgacctcattccggcagccggtgactggaatgcatctctatgcaataaagtggcttatttcaactgcttcccaaatttctcaaccagcttgaaagatgcagctcactgtctaagactgagagtcaagacagatggcatatcaatgatgaaagatatgcaagaactggctatagtatacagaatatactatcaattgatgagtaccacagtagaacctaaaaccaggatatcaaatatctcaggtcttactattggattcctcaccagccagaaaaaccattcacaacagatccacaaggttacttggaatgaagtaacttttcctattgaatggaaattgtttggtccgaaaaaaccagcagaaaatgccaaagcggcaatttatgaaagcagaaagactggagatatcagtctaaaatttgacgatcacagaaaaagtgacatctgtcctaaaaatgtcaggataaacaaaaatcttctcagaagaagctatagcactagagaagctagtgttagtggtaccaaatactctgaagaaccatcagagtccatcactaaagaagaattagaagctgataaaaacagaccagtaaatatgcttagagcacaaaagctttatgatctctatgatgaagcagagtcctgcgaatatcgtgaacgattagaaaaactaatcgaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

430

Amino Acids

49.29

Weight (kDa)

7.47

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1130
AccB1I GGYRCC 1 cut(s) 1130
AccI GTMKAC 1 cut(s) 786
AccII CGCG 1 cut(s) 188
AciI CCGC 4 cut(s) 186, 581, 584, 986
AclWI GGATC 2 cut(s) 383, 895
AcsI RAATTY 2 cut(s) 685, 1028
AcuI CTGAAG 1 cut(s) 1164
AfaI GTAC 3 cut(s) 184, 814, 1132
AfiI CCNNNNNNNGG 5 cut(s) 487, 580, 622, 629, 636
AgeI ACCGGT 1 cut(s) 418
AgsI TTSAA 6 cut(s) 20, 340, 565, 673, 703, 941
AhdI GACNNNNNGTC 1 cut(s) 731
AjnI CCWGG 1 cut(s) 833
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 8 cut(s) 113, 212, 699, 713, 1101, 1118, 1184, 1225
AluI AGCT 8 cut(s) 113, 212, 699, 713, 1101, 1118, 1184, 1225
Alw21I GWGCWC 1 cut(s) 1219
Alw26I GTCTC 4 cut(s) 166, 301, 361, 427
AlwI GGATC 2 cut(s) 383, 895
Ama87I CYCGRG 1 cut(s) 166
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 3 cut(s) 79, 626, 710
ApoI RAATTY 2 cut(s) 685, 1028
AsiGI ACCGGT 1 cut(s) 418
Asp718I GGTACC 1 cut(s) 1130
AspS9I GGNCC 3 cut(s) 154, 453, 956
AsuHPI GGTGA 4 cut(s) 408, 566, 644, 865
AsuII TTCGAA 1 cut(s) 516
AvaI CYCGRG 1 cut(s) 166
AvaII GGWCC 3 cut(s) 154, 453, 956
BaeI ACNNNNGTAYC 2 cut(s) 166, 199
BanI GGYRCC 1 cut(s) 1130
BbsI GAAGAC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 1219
BbvI GCAGC 3 cut(s) 91, 638, 722
BccI CCATC 4 cut(s) 480, 737, 1159, 1169
BcgI CGANNNNNNTGC 2 cut(s) 474, 508
BciT130I CCWGG 1 cut(s) 835
BcoDI GTCTC 4 cut(s) 166, 301, 361, 427
BfaI CTAG 4 cut(s) 98, 158, 1110, 1119
BfmI CTRYAG 3 cut(s) 178, 780, 1102
BglI GCCNNNNNGGC 1 cut(s) 986
BisI GCNGC 6 cut(s) 80, 582, 585, 627, 711, 987
BlpI GCTNAGC 1 cut(s) 213
BlsI GCNGC 6 cut(s) 81, 583, 586, 628, 712, 988
Bme1390I CCNGG 1 cut(s) 835
Bme18I GGWCC 3 cut(s) 154, 453, 956
BmeRI GACNNNNNGTC 1 cut(s) 731
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 3 cut(s) 154, 453, 956
BmiI GGNNCC 4 cut(s) 172, 207, 454, 1132
BmrFI CCNGG 1 cut(s) 835
BmsI GCATC 4 cut(s) 102, 420, 653, 697
BoxI GACNNNNGTC 1 cut(s) 1056
BpiI GAAGAC 1 cut(s) 94
BpmI CTGGAG 1 cut(s) 1032
Bpu1102I GCTNAGC 1 cut(s) 213
Bpu14I TTCGAA 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 427
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 4 cut(s) 418, 498, 551, 573
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 5 cut(s) 487, 580, 622, 629, 636
Bse118I RCCGGY 3 cut(s) 418, 480, 629
Bse1I ACTGG 6 cut(s) 599, 609, 641, 780, 1015, 1199
Bse8I GATNNNNATC 1 cut(s) 410
BseBI CCWGG 1 cut(s) 835
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 93, 249
BseJI GATNNNNATC 1 cut(s) 410
BseLI CCNNNNNNNGG 5 cut(s) 487, 580, 622, 629, 636
BseMII CTCAG 5 cut(s) 290, 291, 719, 864, 1105
BseNI ACTGG 6 cut(s) 599, 609, 641, 780, 1015, 1199
BseRI GAGGAG 1 cut(s) 154
BseXI GCAGC 3 cut(s) 91, 638, 722
Bsh1236I CGCG 1 cut(s) 188
Bsh1285I CGRYCG 1 cut(s) 442
BshFI GGCC 1 cut(s) 320
BshNI GGYRCC 1 cut(s) 1130
BshTI ACCGGT 1 cut(s) 418
BsiEI CGRYCG 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 1219
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 8 cut(s) 419, 481, 499, 552, 574, 602, 623, 630
BslFI GGGAC 2 cut(s) 260, 466
BslI CCNNNNNNNGG 5 cut(s) 487, 580, 622, 629, 636
BsmAI GTCTC 4 cut(s) 166, 301, 361, 427
BsmBI CGTCTC 1 cut(s) 361
BsmFI GGGAC 2 cut(s) 260, 466
BsmI GAATGC 1 cut(s) 646
BsnI GGCC 1 cut(s) 320
Bso31I GGTCTC 1 cut(s) 427
BsoBI CYCGRG 1 cut(s) 166
Bsp119I TTCGAA 1 cut(s) 516
Bsp1286I GDGCHC 1 cut(s) 1219
Bsp143I GATC 7 cut(s) 3, 388, 405, 439, 900, 1036, 1231
Bsp1720I GCTNAGC 1 cut(s) 213
BspACI CCGC 4 cut(s) 186, 581, 584, 986
BspANI GGCC 1 cut(s) 320
BspCNI CTCAG 5 cut(s) 289, 292, 720, 863, 1104
BspFNI CGCG 1 cut(s) 188
BspHI TCATGA 1 cut(s) 402
BspLI GGNNCC 4 cut(s) 172, 207, 454, 1132
BspPI GGATC 2 cut(s) 383, 895
BspT104I TTCGAA 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 1130
BspTNI GGTCTC 1 cut(s) 427
BsrFI RCCGGY 3 cut(s) 418, 480, 629
BsrI ACTGG 6 cut(s) 599, 609, 641, 780, 1015, 1199
BssAI RCCGGY 3 cut(s) 418, 480, 629
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 7 cut(s) 3, 388, 405, 439, 900, 1036, 1231
BssNAI GTATAC 1 cut(s) 787
Bst1107I GTATAC 1 cut(s) 787
Bst2UI CCWGG 1 cut(s) 835
Bst4CI ACNGT 5 cut(s) 119, 179, 199, 719, 820
BstAPI GCANNNNNTGC 1 cut(s) 977
BstBI TTCGAA 1 cut(s) 516
BstDEI CTNAG 8 cut(s) 213, 276, 300, 722, 728, 850, 1091, 1211
BstF5I GGATG 2 cut(s) 93, 249
BstFNI CGCG 1 cut(s) 188
BstKTI GATC 7 cut(s) 6, 391, 408, 442, 903, 1039, 1234
BstMAI GTCTC 4 cut(s) 166, 301, 361, 427
BstMBI GATC 7 cut(s) 3, 388, 405, 439, 900, 1036, 1231
BstMCI CGRYCG 1 cut(s) 442
BstMWI GCNNNNNNNGC 2 cut(s) 977, 986
BstNI CCWGG 1 cut(s) 835
BstPAI GACNNNNGTC 1 cut(s) 1056
BstSCI CCNGG 1 cut(s) 833
BstSFI CTRYAG 3 cut(s) 178, 780, 1102
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 3 cut(s) 91, 638, 722
BstV2I GAAGAC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 900
BstYI RGATCY 1 cut(s) 900
BstZ17I GTATAC 1 cut(s) 787
BsuRI GGCC 1 cut(s) 320
BtgZI GCGATG 1 cut(s) 499
BtsCI GGATG 2 cut(s) 93, 249
BtsIMutI CAGTG 3 cut(s) 128, 616, 715
CciI TCATGA 1 cut(s) 402
Cfr10I RCCGGY 3 cut(s) 418, 480, 629
Cfr13I GGNCC 3 cut(s) 154, 453, 956
Csp6I GTAC 3 cut(s) 183, 813, 1131
CspAI ACCGGT 1 cut(s) 418
CviAII CATG 1 cut(s) 403
CviQI GTAC 3 cut(s) 183, 813, 1131
DdeI CTNAG 8 cut(s) 213, 276, 300, 722, 728, 850, 1091, 1211
DpnI GATC 7 cut(s) 5, 390, 407, 441, 902, 1038, 1233
DpnII GATC 7 cut(s) 3, 388, 405, 439, 900, 1036, 1231
DriI GACNNNNNGTC 1 cut(s) 731
Eam1105I GACNNNNNGTC 1 cut(s) 731
Eco31I GGTCTC 1 cut(s) 427
Eco32I GATATC 2 cut(s) 840, 1018
Eco47I GGWCC 3 cut(s) 154, 453, 956
Eco57I CTGAAG 1 cut(s) 1164
Eco88I CYCGRG 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 833
EcoRV GATATC 2 cut(s) 840, 1018
EcoT22I ATGCAT 1 cut(s) 646
Esp3I CGTCTC 1 cut(s) 361
FaeI CATG 1 cut(s) 406
FaqI GGGAC 2 cut(s) 260, 466
FatI CATG 1 cut(s) 402
FblI GTMKAC 1 cut(s) 786
Fnu4HI GCNGC 6 cut(s) 80, 582, 585, 627, 711, 987
FokI GGATG 2 cut(s) 80, 236
Fsp4HI GCNGC 6 cut(s) 80, 582, 585, 627, 711, 987
FspBI CTAG 4 cut(s) 98, 158, 1110, 1119
GluI GCNGC 6 cut(s) 80, 582, 585, 627, 711, 987
GsuI CTGGAG 1 cut(s) 1032
HaeIII GGCC 1 cut(s) 320
HapII CCGG 8 cut(s) 419, 481, 499, 552, 574, 602, 623, 630
Hin1II CATG 1 cut(s) 406
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 1223
HinfI GANTC 7 cut(s) 20, 380, 598, 732, 867, 1157, 1250
HpaII CCGG 8 cut(s) 419, 481, 499, 552, 574, 602, 623, 630
HphI GGTGA 4 cut(s) 408, 566, 644, 865
Hpy166II GTNNAC 3 cut(s) 310, 787, 1268
Hpy188I TCNGA 7 cut(s) 279, 301, 385, 960, 1094, 1144, 1156
Hpy188III TCNNGA 7 cut(s) 108, 168, 403, 424, 736, 1072, 1265
Hpy8I GTNNAC 3 cut(s) 310, 787, 1268
Hpy99I CGWCG 6 cut(s) 260, 293, 347, 350, 389, 514
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 5 cut(s) 119, 179, 199, 719, 820
HpyCH4IV ACGT 3 cut(s) 342, 399, 512
HpyCH4V TGCA 9 cut(s) 79, 377, 411, 477, 495, 644, 654, 710, 769
HpyF10VI GCNNNNNNNGC 2 cut(s) 977, 986
HpyF3I CTNAG 8 cut(s) 213, 276, 300, 722, 728, 850, 1091, 1211
HpySE526I ACGT 3 cut(s) 342, 399, 512
Hsp92II CATG 1 cut(s) 406
KpnI GGTACC 1 cut(s) 1134
Kzo9I GATC 7 cut(s) 3, 388, 405, 439, 900, 1036, 1231
LmnI GCTCC 2 cut(s) 90, 170
Lsp1109I GCAGC 3 cut(s) 91, 638, 722
LweI GCATC 4 cut(s) 102, 420, 653, 697
MaeI CTAG 4 cut(s) 98, 158, 1110, 1119
MaeII ACGT 3 cut(s) 342, 399, 512
MaeIII GTNAC 6 cut(s) 199, 611, 632, 910, 925, 1049
MalI GATC 7 cut(s) 5, 390, 407, 441, 902, 1038, 1233
MboI GATC 7 cut(s) 3, 388, 405, 439, 900, 1036, 1231
MboII GAAGA 6 cut(s) 94, 530, 1079, 1107, 1157, 1184
MfeI CAATTG 1 cut(s) 803
MflI RGATCY 1 cut(s) 900
MhlI GDGCHC 1 cut(s) 1219
MluCI AATT 7 cut(s) 85, 685, 803, 947, 990, 1028, 1175
MlyI GAGTC 3 cut(s) 741, 1166, 1259
MmeI TCCRAC 2 cut(s) 408, 416
MnlI CCTC 9 cut(s) 146, 175, 285, 296, 310, 462, 550, 626, 881
Mph1103I ATGCAT 1 cut(s) 646
MslI CAYNNNNRTG 2 cut(s) 649, 752
MspI CCGG 8 cut(s) 419, 481, 499, 552, 574, 602, 623, 630
MspR9I CCNGG 1 cut(s) 835
MunI CAATTG 1 cut(s) 803
Mva1269I GAATGC 1 cut(s) 646
MvaI CCWGG 1 cut(s) 835
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 977, 986
NdeII GATC 7 cut(s) 3, 388, 405, 439, 900, 1036, 1231
NlaIII CATG 1 cut(s) 406
NlaIV GGNNCC 4 cut(s) 172, 207, 454, 1132
NmuCI GTSAC 3 cut(s) 611, 632, 1049
NsiI ATGCAT 1 cut(s) 646
NspV TTCGAA 1 cut(s) 516
PagI TCATGA 1 cut(s) 402
PcsI WCGNNNNNNNCGW 2 cut(s) 339, 351
PctI GAATGC 1 cut(s) 646
PfeI GAWTC 4 cut(s) 20, 380, 598, 867
PflFI GACNNNGTC 1 cut(s) 293
PinAI ACCGGT 1 cut(s) 418
PkrI GCNGC 6 cut(s) 81, 583, 586, 628, 712, 988
Ple19I CGATCG 1 cut(s) 442
PleI GAGTC 3 cut(s) 740, 1165, 1258
PpsI GAGTC 3 cut(s) 740, 1165, 1258
PshAI GACNNNNGTC 1 cut(s) 1056
Psp6I CCWGG 1 cut(s) 833
PspGI CCWGG 1 cut(s) 833
PspN4I GGNNCC 4 cut(s) 172, 207, 454, 1132
PspPI GGNCC 3 cut(s) 154, 453, 956
PsrI GAACNNNNNNTAC 2 cut(s) 41, 73
PsuI RGATCY 1 cut(s) 900
PsyI GACNNNGTC 1 cut(s) 293
PvuI CGATCG 1 cut(s) 442
RsaI GTAC 3 cut(s) 184, 814, 1132
RsaNI GTAC 3 cut(s) 183, 813, 1131
RseI CAYNNNNRTG 2 cut(s) 649, 752
SatI GCNGC 6 cut(s) 80, 582, 585, 627, 711, 987
Sau3AI GATC 7 cut(s) 3, 388, 405, 439, 900, 1036, 1231
Sau96I GGNCC 3 cut(s) 154, 453, 956
SchI GAGTC 3 cut(s) 741, 1166, 1259
ScrFI CCNGG 1 cut(s) 835
SduI GDGCHC 1 cut(s) 1219
SfaNI GCATC 4 cut(s) 102, 420, 653, 697
SfcI CTRYAG 3 cut(s) 178, 780, 1102
SfuI TTCGAA 1 cut(s) 516
SinI GGWCC 3 cut(s) 154, 453, 956
SmiMI CAYNNNNRTG 2 cut(s) 649, 752
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 7 cut(s) 85, 685, 803, 947, 990, 1028, 1175
SsiI CCGC 4 cut(s) 186, 581, 584, 986
SspMI CTAG 4 cut(s) 98, 158, 1110, 1119
StyD4I CCNGG 1 cut(s) 833
TaaI ACNGT 5 cut(s) 119, 179, 199, 719, 820
TaiI ACGT 3 cut(s) 345, 402, 515
TaqI TCGA 7 cut(s) 288, 333, 425, 438, 442, 516, 1287
TaqII GACCGA 1 cut(s) 142
TasI AATT 7 cut(s) 85, 685, 803, 947, 990, 1028, 1175
TauI GCSGC 3 cut(s) 584, 587, 989
TfiI GAWTC 4 cut(s) 20, 380, 598, 867
TscAI CASTG 3 cut(s) 128, 616, 722
TseFI GTSAC 3 cut(s) 611, 632, 1049
TseI GCWGC 3 cut(s) 79, 626, 710
Tsp45I GTSAC 3 cut(s) 611, 632, 1049
TspDTI ATGAA 5 cut(s) 47, 773, 936, 1011, 1257
TspGWI ACGGA 2 cut(s) 218, 327
TspRI CASTG 3 cut(s) 128, 616, 722
Tth111I GACNNNGTC 1 cut(s) 293
VpaK11BI GGWCC 3 cut(s) 154, 453, 956
XapI RAATTY 2 cut(s) 685, 1028
XmiI GTMKAC 1 cut(s) 786
XspI CTAG 4 cut(s) 98, 158, 1110, 1119
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.