Rmu_sc0005481.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005481.1
OG0000976
Physical Location & Seq
Forward (+)
10989 .. 11480
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005481.1_g000002.1.cds

Sequence Viewer

Length: 492 bp
atgcttagagcacaaaagctctacgacctctatgatgaagcagaaccttgcgaaaatcctaaacgattagaaaaactaattgaagaaatgaaaattttcaaaccaggaaaggaaagaaaactcattccctatcaagatattgaaatggaagaaggagaaagctccaaaactttcattataagagaaaagggaaaaataaaactctctatacagaaagcctctactggaaaaaatggagaaagaaattctcaaagatttgtcccagaagaaaatatacccagaataacaatttccactcatggtatctggccaaatctagacaaagctgtagacaagagaaaaactcttgaccaatgggttgatagcctgatgatggcttctgctctatcccttggaaaatttgaagcactagatcttcaggtgtactaccaaactactctcactggagtagcaaaaaagtattacttctctttcaaagagactaccagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

19.0

Weight (kDa)

9.01

Isoelectric Point (pI)

28.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 179
AccI GTMKAC 1 cut(s) 330
AcoI YGGCCR 1 cut(s) 308
AcsI RAATTY 3 cut(s) 93, 244, 398
AcuI CTGAAG 1 cut(s) 401
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 5 cut(s) 83, 100, 143, 404, 475
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 3 cut(s) 19, 162, 326
AluI AGCT 3 cut(s) 19, 162, 326
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 473
AoxI GGCC 1 cut(s) 308
ApoI RAATTY 3 cut(s) 93, 244, 398
Asp700I GAANNNNTTC 1 cut(s) 95
BalI TGGCCA 1 cut(s) 310
BarI GAAGNNNNNNTAC 2 cut(s) 258, 290
Bbv12I GWGCWC 1 cut(s) 13
BccI CCATC 1 cut(s) 367
BciT130I CCWGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 2 cut(s) 317, 410
BfmI CTRYAG 1 cut(s) 327
BglII AGATCT 1 cut(s) 412
Bme1390I CCNGG 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 105
BplI GAGNNNNNCTC 2 cut(s) 328, 360
BpmI CTGGAG 1 cut(s) 465
BsaJI CCNNGG 1 cut(s) 391
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 2 cut(s) 229, 448
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 391
BseLI CCNNNNNNNGG 1 cut(s) 373
BseNI ACTGG 2 cut(s) 229, 448
BshFI GGCC 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 13
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 1 cut(s) 473
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 412
BspANI GGCC 1 cut(s) 310
BsrI ACTGG 2 cut(s) 229, 448
BssECI CCNNGG 1 cut(s) 391
BssMI GATC 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 5
BstKTI GATC 1 cut(s) 415
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 1 cut(s) 412
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BsuRI GGCC 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 441
Csp6I GTAC 1 cut(s) 424
CviAII CATG 1 cut(s) 299
CviJI RGCY 7 cut(s) 19, 162, 218, 310, 326, 366, 377
CviKI_1 RGCY 7 cut(s) 19, 162, 218, 310, 326, 366, 377
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 1 cut(s) 5
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 401
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 391
FaeI CATG 1 cut(s) 302
FaiI YATR 5 cut(s) 33, 179, 209, 275, 300
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FaqI GGGAC 1 cut(s) 245
FatI CATG 1 cut(s) 298
FblI GTMKAC 1 cut(s) 330
FspBI CTAG 2 cut(s) 317, 410
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 1 cut(s) 310
Hin1II CATG 1 cut(s) 302
Hpy166II GTNNAC 2 cut(s) 331, 424
Hpy188III TCNNGA 3 cut(s) 134, 317, 347
Hpy8I GTNNAC 2 cut(s) 331, 424
HpyAV CCTTC 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 5
Hsp92II CATG 1 cut(s) 302
Kzo9I GATC 1 cut(s) 412
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 9 cut(s) 90, 117, 210, 276, 292, 292, 380, 404, 429
MaeI CTAG 2 cut(s) 317, 410
MalI GATC 1 cut(s) 414
MboI GATC 1 cut(s) 412
MboII GAAGA 4 cut(s) 95, 161, 278, 407
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 1 cut(s) 13
MlsI TGGCCA 1 cut(s) 310
MluCI AATT 5 cut(s) 78, 93, 244, 288, 398
MluNI TGGCCA 1 cut(s) 310
MnlI CCTC 2 cut(s) 38, 229
Mox20I TGGCCA 1 cut(s) 310
MroXI GAANNNNTTC 1 cut(s) 95
MscI TGGCCA 1 cut(s) 310
Msp20I TGGCCA 1 cut(s) 310
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
NdeII GATC 1 cut(s) 412
NlaIII CATG 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 95
PsiI TTATAA 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
Sau3AI GATC 1 cut(s) 412
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 13
SetI ASST 6 cut(s) 21, 30, 49, 164, 328, 423
SfcI CTRYAG 1 cut(s) 327
Sse9I AATT 5 cut(s) 78, 93, 244, 288, 398
SspMI CTAG 2 cut(s) 317, 410
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 1 cut(s) 391
TasI AATT 5 cut(s) 78, 93, 244, 288, 398
TatI WGTACW 1 cut(s) 423
TscAI CASTG 1 cut(s) 448
TspDTI ATGAA 3 cut(s) 51, 104, 163
TspRI CASTG 1 cut(s) 448
XapI RAATTY 3 cut(s) 93, 244, 398
XbaI TCTAGA 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 330
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 2 cut(s) 317, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.