Rmu_sc0010278.1_g000009

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010278.1
OG0000976
Physical Location & Seq
Forward (+)
40651 .. 43876
3226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010278.1_g000009.1.cds

Sequence Viewer

Length: 1347 bp
atggcgcggtggagggagttgagggcggcgagtcaagcggagtcatcgtcgtcggagttggggggtttagaggaagagcgacagagagaagcgcggctagttgctgctgttggtggtgctgtggccttgcatcacgctctgcttgctttaccatctctcattctctttcttctttcgctctgctctctagccgagccttgtgaatacggcagccaggtttatttctcgataaacatctggaaggatgcatcccactgtctccgactgagagtcaagacagatggcatatcaatgaaaaatgatatgcaagaattggcgatagtatacagaatatactataaactgatgagcaccacagtagagccaaagacagggatctccaacatccctggtcttactactggattcctcaccagtcagaagaaccattcacaacagattcacaaggttacttggaatgaggtaacttttcctattgaatggaaattatctggtccgaagctaccagtagaaaatgcaaaagctaaaatttatgaaagtagaaagattggagaaatcagtctaaattttgacaatcacagaaaaagtgatgtcggtcctgagaatctcaggaaaaacaggaatcttctcaggagaagctacagcactagagaagctagtgtcagtggtacaaaacccactattgaagatcctattactgaagaagaactgggagttgatctaaacagaccagtccagatgttcagagctgagaagctctatgagctttatgaagaggctgagaattgcgaaaatcttgatcgattagaaaaactaatcgaagaaatgaaagaattcaaaatcagaaagacgagaaaagtctttccatatcaagagattgaaatggaagaaggagaaagctccagaacttccatcagtcgagaaaagggaaagattaaactccctatacagaaggcccctacaggcagaaatggagaaagaaattctcaaagatttgtcccagaggacaagatacccagagtaccaatttccacctatggaatttggctagatctggataaagctctagacaagagaaaaactcttgaccaatgggtagacagcctgatgatggcctctgctcttacccttggaaaatttgaagctcctgattttcagatgtactttgaaactacaccagagtggcaaaaaatacccctgtacgatcagttatgtggagatctctcaaatctgagtgaaaaagccaaagaaacggcaaagtcgaatatctatgctctcaaaatctgtgataggcctcatcaaaaagcccgcggatcaagtgggccgatggaggccctctggccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

448

Amino Acids

51.21

Weight (kDa)

8.05

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 324, 1098
AccII CGCG 3 cut(s) 7, 94, 1311
AciI CCGC 6 cut(s) 7, 26, 38, 94, 1309, 1311
AclWI GGATC 3 cut(s) 383, 683, 1321
AcsI RAATTY 6 cut(s) 528, 565, 833, 982, 1041, 1136
AcuI CTGAAG 1 cut(s) 720
AfaI GTAC 4 cut(s) 670, 1023, 1163, 1202
AfiI CCNNNNNNNGG 2 cut(s) 371, 1111
AgsI TTSAA 6 cut(s) 479, 686, 838, 881, 1142, 1169
AhdI GACNNNNNGTC 1 cut(s) 269
AjnI CCWGG 2 cut(s) 213, 388
AleI CACNNNNGTG 1 cut(s) 1180
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 3 cut(s) 383, 683, 1321
AoxI GGCC 7 cut(s) 123, 954, 1113, 1292, 1322, 1332, 1340
ApeKI GCWGC 2 cut(s) 104, 210
ApoI RAATTY 6 cut(s) 528, 565, 833, 982, 1041, 1136
Asp700I GAANNNNTTC 1 cut(s) 833
AspLEI GCGC 2 cut(s) 7, 94
AspS9I GGNCC 6 cut(s) 494, 596, 955, 1322, 1333, 1341
AsuHPI GGTGA 1 cut(s) 403
AvaII GGWCC 2 cut(s) 494, 596
Bbv12I GWGCWC 1 cut(s) 353
BbvI GCAGC 2 cut(s) 91, 222
BccI CCATC 5 cut(s) 160, 275, 920, 1105, 1321
BceAI ACGGC 2 cut(s) 223, 1269
BciT130I CCWGG 2 cut(s) 215, 390
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 6 cut(s) 98, 188, 648, 657, 1049, 1067
BfmI CTRYAG 2 cut(s) 640, 960
BglII AGATCT 2 cut(s) 1051, 1219
BisI GCNGC 4 cut(s) 27, 95, 105, 211
BlsI GCNGC 4 cut(s) 28, 96, 106, 212
Bme1390I CCNGG 2 cut(s) 215, 390
Bme18I GGWCC 2 cut(s) 494, 596
BmeRI GACNNNNNGTC 1 cut(s) 269
BmgT120I GGNCC 6 cut(s) 494, 596, 955, 1322, 1333, 1341
BmiI GGNNCC 1 cut(s) 957
BmrFI CCNGG 2 cut(s) 215, 390
BmrI ACTGGG 1 cut(s) 719
BmsI GCATC 3 cut(s) 139, 235, 257
BmuI ACTGGG 1 cut(s) 719
BplI GAGNNNNNCTC 2 cut(s) 1066, 1098
BpmI CTGGAG 1 cut(s) 886
Bsa29I ATCGAT 1 cut(s) 802
BsaBI GATNNNNATC 1 cut(s) 233
BsaJI CCNNGG 3 cut(s) 388, 1129, 1309
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 1111
Bse1I ACTGG 5 cut(s) 406, 414, 506, 714, 731
Bse8I GATNNNNATC 1 cut(s) 233
BseBI CCWGG 2 cut(s) 215, 390
BseCI ATCGAT 1 cut(s) 802
BseDI CCNNGG 3 cut(s) 388, 1129, 1309
BseGI GGATG 3 cut(s) 248, 250, 384
BseJI GATNNNNATC 1 cut(s) 233
BseLI CCNNNNNNNGG 2 cut(s) 371, 1111
BseMII CTCAG 7 cut(s) 257, 591, 622, 643, 741, 771, 1223
BseNI ACTGG 5 cut(s) 406, 414, 506, 714, 731
BseXI GCAGC 2 cut(s) 91, 222
Bsh1236I CGCG 3 cut(s) 7, 94, 1311
BshFI GGCC 7 cut(s) 125, 956, 1115, 1294, 1324, 1334, 1342
BshVI ATCGAT 1 cut(s) 802
BsiHKAI GWGCWC 1 cut(s) 353
BslFI GGGAC 1 cut(s) 983
BslI CCNNNNNNNGG 2 cut(s) 371, 1111
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 983
BsnI GGCC 7 cut(s) 125, 956, 1115, 1294, 1324, 1334, 1342
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 8 cut(s) 375, 688, 718, 799, 1051, 1204, 1219, 1313
BspACI CCGC 6 cut(s) 7, 26, 38, 94, 1309, 1311
BspANI GGCC 7 cut(s) 125, 956, 1115, 1294, 1324, 1334, 1342
BspCNI CTCAG 7 cut(s) 258, 592, 621, 642, 742, 772, 1224
BspDI ATCGAT 1 cut(s) 802
BspFNI CGCG 3 cut(s) 7, 94, 1311
BspLI GGNNCC 1 cut(s) 957
BspPI GGATC 3 cut(s) 383, 683, 1321
BspQI GCTCTTC 1 cut(s) 69
BsrI ACTGG 5 cut(s) 406, 414, 506, 714, 731
BssECI CCNNGG 3 cut(s) 388, 1129, 1309
BssMI GATC 8 cut(s) 375, 688, 718, 799, 1051, 1204, 1219, 1313
BssNAI GTATAC 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 1129
Bst1107I GTATAC 1 cut(s) 325
Bst2UI CCWGG 2 cut(s) 215, 390
Bst4CI ACNGT 2 cut(s) 257, 358
Bst6I CTCTTC 2 cut(s) 69, 768
BstC8I GCNNGC 2 cut(s) 144, 1309
BstDEI CTNAG 7 cut(s) 266, 600, 608, 629, 750, 780, 1232
BstDSI CCRYGG 1 cut(s) 1309
BstF5I GGATG 3 cut(s) 248, 250, 384
BstFNI CGCG 3 cut(s) 7, 94, 1311
BstHHI GCGC 2 cut(s) 7, 94
BstKTI GATC 8 cut(s) 378, 691, 721, 802, 1054, 1207, 1222, 1316
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 8 cut(s) 375, 688, 718, 799, 1051, 1204, 1219, 1313
BstMWI GCNNNNNNNGC 3 cut(s) 35, 143, 763
BstNI CCWGG 2 cut(s) 215, 390
BstSCI CCNGG 2 cut(s) 213, 388
BstSFI CTRYAG 2 cut(s) 640, 960
BstUI CGCG 3 cut(s) 7, 94, 1311
BstV1I GCAGC 2 cut(s) 91, 222
BstX2I RGATCY 4 cut(s) 375, 688, 1051, 1219
BstYI RGATCY 4 cut(s) 375, 688, 1051, 1219
BstZ17I GTATAC 1 cut(s) 325
Bsu15I ATCGAT 1 cut(s) 802
BsuRI GGCC 7 cut(s) 125, 956, 1115, 1294, 1324, 1334, 1342
BsuTUI ATCGAT 1 cut(s) 802
BtgI CCRYGG 1 cut(s) 1309
BtsCI GGATG 3 cut(s) 248, 250, 384
BtsIMutI CAGTG 2 cut(s) 253, 670
Cac8I GCNNGC 2 cut(s) 144, 1309
CfoI GCGC 2 cut(s) 7, 94
Cfr13I GGNCC 6 cut(s) 494, 596, 955, 1322, 1333, 1341
Cfr42I CCGCGG 1 cut(s) 1312
ClaI ATCGAT 1 cut(s) 802
Csp6I GTAC 4 cut(s) 669, 1022, 1162, 1201
CviQI GTAC 4 cut(s) 669, 1022, 1162, 1201
DdeI CTNAG 7 cut(s) 266, 600, 608, 629, 750, 780, 1232
DpnI GATC 8 cut(s) 377, 690, 720, 801, 1053, 1206, 1221, 1315
DpnII GATC 8 cut(s) 375, 688, 718, 799, 1051, 1204, 1219, 1313
DriI GACNNNNNGTC 1 cut(s) 269
Eam1104I CTCTTC 2 cut(s) 69, 768
Eam1105I GACNNNNNGTC 1 cut(s) 269
EarI CTCTTC 2 cut(s) 69, 768
Eco130I CCWWGG 1 cut(s) 1129
Eco147I AGGCCT 1 cut(s) 1294
Eco47I GGWCC 2 cut(s) 494, 596
Eco57I CTGAAG 1 cut(s) 720
EcoO109I RGGNCCY 2 cut(s) 955, 1333
EcoRI GAATTC 1 cut(s) 833
EcoRII CCWGG 2 cut(s) 213, 388
EcoT14I CCWWGG 1 cut(s) 1129
EcoT22I ATGCAT 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 1129
FaqI GGGAC 1 cut(s) 983
FauI CCCGC 1 cut(s) 1316
FblI GTMKAC 2 cut(s) 324, 1098
Fnu4HI GCNGC 4 cut(s) 27, 95, 105, 211
FokI GGATG 3 cut(s) 235, 257, 371
Fsp4HI GCNGC 4 cut(s) 27, 95, 105, 211
FspBI CTAG 6 cut(s) 98, 188, 648, 657, 1049, 1067
GlaI GCGC 2 cut(s) 6, 93
GluI GCNGC 4 cut(s) 27, 95, 105, 211
GsuI CTGGAG 1 cut(s) 886
HaeIII GGCC 7 cut(s) 125, 956, 1115, 1294, 1324, 1334, 1342
HhaI GCGC 2 cut(s) 7, 94
Hin6I GCGC 2 cut(s) 5, 92
HinP1I GCGC 2 cut(s) 5, 92
HinfI GANTC 7 cut(s) 31, 41, 270, 405, 439, 604, 622
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 2 cut(s) 325, 1099
Hpy188I TCNGA 8 cut(s) 55, 263, 420, 498, 746, 845, 1158, 1233
Hpy8I GTNNAC 2 cut(s) 325, 1099
Hpy99I CGWCG 2 cut(s) 52, 55
HpyAV CCTTC 3 cut(s) 235, 884, 946
HpyCH4III ACNGT 2 cut(s) 257, 358
HpyCH4V TGCA 4 cut(s) 130, 248, 307, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 143, 763
HpyF3I CTNAG 7 cut(s) 266, 600, 608, 629, 750, 780, 1232
HspAI GCGC 2 cut(s) 5, 92
KspI CCGCGG 1 cut(s) 1312
Kzo9I GATC 8 cut(s) 375, 688, 718, 799, 1051, 1204, 1219, 1313
LguI GCTCTTC 1 cut(s) 69
LmnI GCTCC 2 cut(s) 905, 1150
Lsp1109I GCAGC 2 cut(s) 91, 222
LweI GCATC 3 cut(s) 139, 235, 257
MaeI CTAG 6 cut(s) 98, 188, 648, 657, 1049, 1067
MaeIII GTNAC 2 cut(s) 448, 463
MalI GATC 8 cut(s) 377, 690, 720, 801, 1053, 1206, 1221, 1315
MboI GATC 8 cut(s) 375, 688, 718, 799, 1051, 1204, 1219, 1313
MflI RGATCY 4 cut(s) 375, 688, 1051, 1219
MhlI GDGCHC 1 cut(s) 353
MlyI GAGTC 3 cut(s) 40, 50, 279
MmeI TCCRAC 3 cut(s) 33, 286, 405
Mph1103I ATGCAT 1 cut(s) 250
MroXI GAANNNNTTC 1 cut(s) 833
MseI TTAA 1 cut(s) 936
MslI CAYNNNNRTG 2 cut(s) 290, 1180
MspA1I CMGCKG 1 cut(s) 1311
MspR9I CCNGG 2 cut(s) 215, 390
MvaI CCWGG 2 cut(s) 215, 390
MvnI CGCG 3 cut(s) 7, 94, 1311
MwoI GCNNNNNNNGC 3 cut(s) 35, 143, 763
NdeII GATC 8 cut(s) 375, 688, 718, 799, 1051, 1204, 1219, 1313
NlaIV GGNNCC 1 cut(s) 957
NmeAIII GCCGAG 1 cut(s) 217
NsiI ATGCAT 1 cut(s) 250
OliI CACNNNNGTG 1 cut(s) 1180
PceI AGGCCT 1 cut(s) 1294
PciSI GCTCTTC 1 cut(s) 69
PcsI WCGNNNNNNNCGW 1 cut(s) 1259
PdmI GAANNNNTTC 1 cut(s) 833
PfeI GAWTC 4 cut(s) 405, 439, 604, 622
PkrI GCNGC 4 cut(s) 28, 96, 106, 212
PleI GAGTC 3 cut(s) 39, 49, 278
PpsI GAGTC 3 cut(s) 39, 49, 278
Psp6I CCWGG 2 cut(s) 213, 388
PspGI CCWGG 2 cut(s) 213, 388
PspN4I GGNNCC 1 cut(s) 957
PspPI GGNCC 6 cut(s) 494, 596, 955, 1322, 1333, 1341
PsuI RGATCY 4 cut(s) 375, 688, 1051, 1219
RsaI GTAC 4 cut(s) 670, 1023, 1163, 1202
RsaNI GTAC 4 cut(s) 669, 1022, 1162, 1201
RseI CAYNNNNRTG 2 cut(s) 290, 1180
SacII CCGCGG 1 cut(s) 1312
SapI GCTCTTC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 936
SatI GCNGC 4 cut(s) 27, 95, 105, 211
Sau3AI GATC 8 cut(s) 375, 688, 718, 799, 1051, 1204, 1219, 1313
Sau96I GGNCC 6 cut(s) 494, 596, 955, 1322, 1333, 1341
SchI GAGTC 3 cut(s) 40, 50, 279
ScrFI CCNGG 2 cut(s) 215, 390
SduI GDGCHC 1 cut(s) 353
SfaNI GCATC 3 cut(s) 139, 235, 257
SfcI CTRYAG 2 cut(s) 640, 960
Sfr303I CCGCGG 1 cut(s) 1312
SgrBI CCGCGG 1 cut(s) 1312
SinI GGWCC 2 cut(s) 494, 596
SmiMI CAYNNNNRTG 2 cut(s) 290, 1180
SseBI AGGCCT 1 cut(s) 1294
SsiI CCGC 6 cut(s) 7, 26, 38, 94, 1309, 1311
SspMI CTAG 6 cut(s) 98, 188, 648, 657, 1049, 1067
StuI AGGCCT 1 cut(s) 1294
StyD4I CCNGG 2 cut(s) 213, 388
StyI CCWWGG 1 cut(s) 1129
TaaI ACNGT 2 cut(s) 257, 358
TaqI TCGA 5 cut(s) 227, 802, 819, 919, 1262
TaqII GACCGA 1 cut(s) 584
TatI WGTACW 1 cut(s) 1161
TauI GCSGC 2 cut(s) 29, 97
TfiI GAWTC 4 cut(s) 405, 439, 604, 622
Tru1I TTAA 1 cut(s) 936
Tru9I TTAA 1 cut(s) 936
TscAI CASTG 2 cut(s) 260, 670
TseI GCWGC 2 cut(s) 104, 210
TspDTI ATGAA 4 cut(s) 308, 549, 786, 842
TspRI CASTG 2 cut(s) 260, 670
VpaK11BI GGWCC 2 cut(s) 494, 596
XapI RAATTY 6 cut(s) 528, 565, 833, 982, 1041, 1136
XbaI TCTAGA 1 cut(s) 1066
XmiI GTMKAC 2 cut(s) 324, 1098
XmnI GAANNNNTTC 1 cut(s) 833
XspI CTAG 6 cut(s) 98, 188, 648, 657, 1049, 1067
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.