Rmu_sc0000768.1_g000022

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000768.1
OG0000976
Physical Location & Seq
Reverse (-)
65446 .. 68304
2859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000768.1_g000022.1.cds

Sequence Viewer

Length: 1068 bp
atgaggacccaagagaaccagaaatacacgtcagtgggaatgcccaaaatcaagtatcttgaccctaggatcactgttgcatggttagctcccaagaccagaataacaaatattccgggtcttactattggcttcctcaccaatcagaagaaccattcacaacagattcataaagttacttggaatgaagtgacttttccttttgaatggaaactatccggtccaaaaaagctaccggaaagtgcgaaagcaaaaatctatgaaagtagaaagactggagaaatcagtctcaattttgacaatcacagaaaaagtgatgtctgtcctgagaacctcaggataaataaaaatcttctcaaaagaagctatagcactagagaagctagtgttagtggtacaaaacccactattgaagaaccaatatttgaagaagaactagaagctgatctaaacagaccagtcaatatgttcagagcagaaaggctctatgaactctatgaagaagcagaatcttgtgaaaatcctgaacgattagaaaaactaatcgaagaaatgaaagaattcaaaatcagaaagacgagaaaagtctttccgtatcaagatattgaaatggaagaaggagaaaactccagaactttcattagcagagaaaaagggaagataaaactcccagttcagaaagcccccacgggaaacaagaactatctttcggacgccttaaccagagaactggcaatgtttagccaaagagatgacgacgaaggtcgcaatcccagaagcagaagaactgggaaagaacatgaaactaatgaggatcctaaagaaaaaatcctcaaaagattcctgctaagtctgaaaggcttggcctcaactgatcaatccccgagtaaaggattggctagcccgtctcaaatggcagacggtaaaggctcatcaagaccgttgacggctgctgctttgccaaaaagcagaccaactccaactggagttataaatgtttttagggctaaattctggttacttccctgtggtttaggtccaaaatcaattcagtccctggacttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

355

Amino Acids

40.66

Weight (kDa)

9.45

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 992
AclWI GGATC 3 cut(s) 77, 809, 822
AcsI RAATTY 2 cut(s) 560, 1010
AcyI GRCGYC 1 cut(s) 714
AfaI GTAC 1 cut(s) 397
AfiI CCNNNNNNNGG 1 cut(s) 890
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 5 cut(s) 206, 413, 428, 565, 608
AjiI CACGTC 1 cut(s) 30
AjnI CCWGG 1 cut(s) 1056
AleI CACNNNNGTG 1 cut(s) 32
AluBI AGCT 5 cut(s) 89, 232, 366, 383, 443
AluI AGCT 5 cut(s) 89, 232, 366, 383, 443
Alw26I GTCTC 2 cut(s) 293, 912
AlwI GGATC 3 cut(s) 77, 809, 822
AlwNI CAGNNNCTG 1 cut(s) 1057
Ama87I CYCGRG 1 cut(s) 883
AoxI GGCC 1 cut(s) 864
ApeKI GCWGC 2 cut(s) 950, 953
ApoI RAATTY 2 cut(s) 560, 1010
Asp700I GAANNNNTTC 1 cut(s) 560
AspA2I CCTAGG 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 6, 221, 1037
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 130
AsuNHI GCTAGC 1 cut(s) 899
AvaI CYCGRG 1 cut(s) 883
AvaII GGWCC 3 cut(s) 6, 221, 1037
AvrII CCTAGG 1 cut(s) 65
AxyI CCTNAGG 1 cut(s) 335
BamHI GGATCC 1 cut(s) 814
BbvI GCAGC 2 cut(s) 937, 940
BceAI ACGGC 1 cut(s) 963
BciT130I CCWGG 1 cut(s) 1058
BclI TGATCA 1 cut(s) 874
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 293, 912
BfaI CTAG 5 cut(s) 66, 375, 384, 437, 900
BfmI CTRYAG 1 cut(s) 367
BisI GCNGC 2 cut(s) 951, 954
BlnI CCTAGG 1 cut(s) 65
BlsI GCNGC 2 cut(s) 952, 955
Bme1390I CCNGG 2 cut(s) 117, 1058
Bme18I GGWCC 3 cut(s) 6, 221, 1037
BmeT110I CYCGRG 1 cut(s) 883
BmgBI CACGTC 1 cut(s) 30
BmgT120I GGNCC 3 cut(s) 6, 221, 1037
BmiI GGNNCC 2 cut(s) 8, 816
BmrFI CCNGG 2 cut(s) 117, 1058
BmrI ACTGGG 2 cut(s) 665, 798
BmtI GCTAGC 1 cut(s) 903
BmuI ACTGGG 2 cut(s) 665, 798
BoxI GACNNNNGTC 1 cut(s) 762
BpmI CTGGAG 3 cut(s) 297, 613, 1005
BpuMI CCSGG 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 714
BsaJI CCNNGG 3 cut(s) 65, 687, 1056
BsaWI WCCGGW 2 cut(s) 218, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 890
Bse1I ACTGG 6 cut(s) 280, 458, 671, 735, 793, 988
Bse21I CCTNAGG 1 cut(s) 335
Bse3DI GCAATG 1 cut(s) 741
BseBI CCWGG 1 cut(s) 1058
BseDI CCNNGG 3 cut(s) 65, 687, 1056
BseLI CCNNNNNNNGG 1 cut(s) 890
BseMI GCAATG 1 cut(s) 741
BseMII CTCAG 2 cut(s) 318, 349
BseNI ACTGG 6 cut(s) 280, 458, 671, 735, 793, 988
BseXI GCAGC 2 cut(s) 937, 940
BshFI GGCC 1 cut(s) 866
BsiHKCI CYCGRG 1 cut(s) 883
BsiSI CCGG 3 cut(s) 116, 219, 236
BslFI GGGAC 1 cut(s) 1039
BslI CCNNNNNNNGG 1 cut(s) 890
BsmAI GTCTC 2 cut(s) 293, 912
BsmBI CGTCTC 1 cut(s) 912
BsmFI GGGAC 1 cut(s) 1039
BsmI GAATGC 1 cut(s) 45
BsnI GGCC 1 cut(s) 866
BsoBI CYCGRG 1 cut(s) 883
Bsp143I GATC 4 cut(s) 69, 445, 814, 874
BspANI GGCC 1 cut(s) 866
BspCNI CTCAG 2 cut(s) 319, 348
BspLI GGNNCC 2 cut(s) 8, 816
BspOI GCTAGC 1 cut(s) 903
BspPI GGATC 3 cut(s) 77, 809, 822
BsrDI GCAATG 1 cut(s) 741
BsrI ACTGG 6 cut(s) 280, 458, 671, 735, 793, 988
BssECI CCNNGG 3 cut(s) 65, 687, 1056
BssMI GATC 4 cut(s) 69, 445, 814, 874
BssNI GRCGYC 1 cut(s) 714
BssT1I CCWWGG 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 1058
Bst4CI ACNGT 3 cut(s) 76, 923, 942
BstACI GRCGYC 1 cut(s) 714
BstC8I GCNNGC 1 cut(s) 901
BstDEI CTNAG 3 cut(s) 327, 335, 848
BstDSI CCRYGG 1 cut(s) 687
BstKTI GATC 4 cut(s) 72, 448, 817, 877
BstMAI GTCTC 2 cut(s) 293, 912
BstMBI GATC 4 cut(s) 69, 445, 814, 874
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 1 cut(s) 1058
BstPAI GACNNNNGTC 1 cut(s) 762
BstSCI CCNGG 2 cut(s) 115, 1056
BstSFI CTRYAG 1 cut(s) 367
BstV1I GCAGC 2 cut(s) 937, 940
BstX2I RGATCY 1 cut(s) 814
BstXI CCANNNNNNTGG 1 cut(s) 730
BstYI RGATCY 1 cut(s) 814
Bsu36I CCTNAGG 1 cut(s) 335
BsuRI GGCC 1 cut(s) 866
BtgI CCRYGG 1 cut(s) 687
BtrI CACGTC 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 39, 72
Cac8I GCNNGC 1 cut(s) 901
CaiI CAGNNNCTG 1 cut(s) 1057
Cfr13I GGNCC 3 cut(s) 6, 221, 1037
CseI GACGC 1 cut(s) 722
Csp6I GTAC 1 cut(s) 396
CviAII CATG 2 cut(s) 81, 800
CviQI GTAC 1 cut(s) 396
DdeI CTNAG 3 cut(s) 327, 335, 848
DpnI GATC 4 cut(s) 71, 447, 816, 876
DpnII GATC 4 cut(s) 69, 445, 814, 874
Eco130I CCWWGG 1 cut(s) 65
Eco47I GGWCC 3 cut(s) 6, 221, 1037
Eco81I CCTNAGG 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 883
EcoO109I RGGNCCY 1 cut(s) 6
EcoRI GAATTC 1 cut(s) 560
EcoRII CCWGG 1 cut(s) 1056
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
Esp3I CGTCTC 1 cut(s) 912
FaeI CATG 2 cut(s) 84, 803
FaiI YATR 9 cut(s) 82, 171, 261, 369, 467, 489, 498, 801, 992
FaqI GGGAC 1 cut(s) 1039
FatI CATG 2 cut(s) 80, 799
FbaI TGATCA 1 cut(s) 874
Fnu4HI GCNGC 2 cut(s) 951, 954
Fsp4HI GCNGC 2 cut(s) 951, 954
FspBI CTAG 5 cut(s) 66, 375, 384, 437, 900
GluI GCNGC 2 cut(s) 951, 954
GsuI CTGGAG 3 cut(s) 297, 613, 1005
HaeIII GGCC 1 cut(s) 866
HapII CCGG 3 cut(s) 116, 219, 236
HgaI GACGC 1 cut(s) 722
Hin1I GRCGYC 1 cut(s) 714
Hin1II CATG 2 cut(s) 84, 803
HincII GTYRAC 1 cut(s) 945
HindII GTYRAC 1 cut(s) 945
HinfI GANTC 3 cut(s) 166, 509, 840
HpaII CCGG 3 cut(s) 116, 219, 236
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 945
Hpy188I TCNGA 6 cut(s) 147, 473, 572, 678, 712, 855
Hpy188III TCNNGA 7 cut(s) 59, 326, 337, 524, 599, 630, 936
Hpy8I GTNNAC 1 cut(s) 945
Hpy99I CGWCG 1 cut(s) 761
HpyAV CCTTC 2 cut(s) 611, 755
HpyCH4III ACNGT 3 cut(s) 76, 923, 942
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 3 cut(s) 327, 335, 848
HpySE526I ACGT 1 cut(s) 29
Hsp92I GRCGYC 1 cut(s) 714
Hsp92II CATG 2 cut(s) 84, 803
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 4 cut(s) 69, 445, 814, 874
LmnI GCTCC 1 cut(s) 94
Lsp1109I GCAGC 2 cut(s) 937, 940
MaeI CTAG 5 cut(s) 66, 375, 384, 437, 900
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 3 cut(s) 175, 190, 1017
MalI GATC 4 cut(s) 71, 447, 816, 876
MboI GATC 4 cut(s) 69, 445, 814, 874
MflI RGATCY 1 cut(s) 814
MluCI AATT 4 cut(s) 292, 560, 1010, 1047
MmeI TCCRAC 1 cut(s) 1004
MnlI CCTC 5 cut(s) 146, 344, 805, 842, 877
MroXI GAANNNNTTC 1 cut(s) 560
MseI TTAA 1 cut(s) 719
MslI CAYNNNNRTG 1 cut(s) 32
MspI CCGG 3 cut(s) 116, 219, 236
MspR9I CCNGG 2 cut(s) 117, 1058
Mva1269I GAATGC 1 cut(s) 45
MvaI CCWGG 1 cut(s) 1058
MwoI GCNNNNNNNGC 1 cut(s) 86
NciI CCSGG 1 cut(s) 117
NdeII GATC 4 cut(s) 69, 445, 814, 874
NheI GCTAGC 1 cut(s) 899
NlaIII CATG 2 cut(s) 84, 803
NlaIV GGNNCC 2 cut(s) 8, 816
NmuCI GTSAC 1 cut(s) 190
OliI CACNNNNGTG 1 cut(s) 32
PctI GAATGC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 560
PfeI GAWTC 3 cut(s) 166, 509, 840
PkrI GCNGC 2 cut(s) 952, 955
PpuMI RGGWCCY 1 cut(s) 6
PshAI GACNNNNGTC 1 cut(s) 762
PsiI TTATAA 1 cut(s) 992
Psp5II RGGWCCY 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 1056
PspGI CCWGG 1 cut(s) 1056
PspN4I GGNNCC 2 cut(s) 8, 816
PspPI GGNCC 3 cut(s) 6, 221, 1037
PspPPI RGGWCCY 1 cut(s) 6
PsrI GAACNNNNNNTAC 2 cut(s) 8, 40
PstNI CAGNNNCTG 1 cut(s) 1057
PsuI RGATCY 1 cut(s) 814
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 719
SatI GCNGC 2 cut(s) 951, 954
Sau3AI GATC 4 cut(s) 69, 445, 814, 874
Sau96I GGNCC 3 cut(s) 6, 221, 1037
ScrFI CCNGG 2 cut(s) 117, 1058
SetI ASST 9 cut(s) 32, 91, 234, 336, 368, 385, 445, 766, 1039
SfcI CTRYAG 1 cut(s) 367
SinI GGWCC 3 cut(s) 6, 221, 1037
SmiMI CAYNNNNRTG 1 cut(s) 32
Sse9I AATT 4 cut(s) 292, 560, 1010, 1047
SspI AATATT 2 cut(s) 112, 423
SspMI CTAG 5 cut(s) 66, 375, 384, 437, 900
StyD4I CCNGG 2 cut(s) 115, 1056
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 3 cut(s) 76, 923, 942
TaiI ACGT 1 cut(s) 32
TaqI TCGA 1 cut(s) 546
TasI AATT 4 cut(s) 292, 560, 1010, 1047
TfiI GAWTC 3 cut(s) 166, 509, 840
Tru1I TTAA 1 cut(s) 719
Tru9I TTAA 1 cut(s) 719
TscAI CASTG 2 cut(s) 39, 79
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 2 cut(s) 950, 953
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 8 cut(s) 158, 201, 276, 504, 513, 569, 628, 816
TspGWI ACGGA 1 cut(s) 582
TspRI CASTG 2 cut(s) 39, 79
VpaK11BI GGWCC 3 cut(s) 6, 221, 1037
XapI RAATTY 2 cut(s) 560, 1010
XmaJI CCTAGG 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 560
XspI CTAG 5 cut(s) 66, 375, 384, 437, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.