Rh4CG090000

Zinc knuckle family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000976
Physical Location & Seq
Reverse (-)
16200144 .. 16200503
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG090000.1

Sequence Viewer

Length: 360 bp
ATGATCACTTCTAAAGAAGTTGCCCGAGCAAGAACAAAAAATTATCAATTTATGCATATTATAGCAGTCCAAGTAGGCATAAAACTATTGGCTCGAGAAGGCATAACCTGTTCAATCCAATGTGTCCTCCAAGACAATAGACTAACAGATTTTCAAGCTAGTCTATTGGGAACCCTTGAAGCATCTTTATGCAATCAAGTGGCTTATTTCAACTGCTTCCCAAATTTCTCTACCAGCTTGAAAGATGCATCTCACTGTCTAAGACTGAGAGTCAAGACAGATGGCATATTCATGAAAAAAGATATGCAAGAATTGGCTATAGTATACAGAATATACTATAAACTAATGATACTACGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MP RVP zf-CCHC

Protein Analysis

119

Amino Acids

13.69

Weight (kDa)

9.37

Isoelectric Point (pI)

19.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MP PF01107 5 - 115 1e-20 Viral movement protein (MP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 324
AcsI RAATTY 1 cut(s) 223
AgsI TTSAA 5 cut(s) 114, 155, 179, 211, 241
AhdI GACNNNNNGTC 1 cut(s) 269
AluBI AGCT 2 cut(s) 158, 237
AluI AGCT 2 cut(s) 158, 237
Ama87I CYCGRG 2 cut(s) 24, 93
ApoI RAATTY 1 cut(s) 223
AvaI CYCGRG 2 cut(s) 24, 93
BaeI ACNNNNGTAYC 1 cut(s) 341
BccI CCATC 1 cut(s) 275
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 318
BmeRI GACNNNNNGTC 1 cut(s) 269
BmeT110I CYCGRG 2 cut(s) 24, 93
BmiI GGNNCC 1 cut(s) 172
BmsI GCATC 3 cut(s) 191, 235, 257
BseMII CTCAG 1 cut(s) 257
BsiHKCI CYCGRG 2 cut(s) 24, 93
BsoBI CYCGRG 2 cut(s) 24, 93
Bsp143I GATC 1 cut(s) 3
BspCNI CTCAG 1 cut(s) 258
BspHI TCATGA 1 cut(s) 291
BspLI GGNNCC 1 cut(s) 172
BssMI GATC 1 cut(s) 3
BssNAI GTATAC 1 cut(s) 325
Bst1107I GTATAC 1 cut(s) 325
Bst4CI ACNGT 2 cut(s) 257, 357
BstDEI CTNAG 2 cut(s) 260, 266
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstSFI CTRYAG 1 cut(s) 318
BstZ17I GTATAC 1 cut(s) 325
BtsIMutI CAGTG 1 cut(s) 253
CciI TCATGA 1 cut(s) 291
CviAII CATG 1 cut(s) 292
CviJI RGCY 5 cut(s) 92, 158, 203, 237, 317
CviKI_1 RGCY 5 cut(s) 92, 158, 203, 237, 317
DdeI CTNAG 2 cut(s) 260, 266
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DriI GACNNNNNGTC 1 cut(s) 269
Eam1105I GACNNNNNGTC 1 cut(s) 269
Eco88I CYCGRG 2 cut(s) 24, 93
EcoT22I ATGCAT 2 cut(s) 57, 250
FaeI CATG 1 cut(s) 295
FatI CATG 1 cut(s) 291
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 324
FspBI CTAG 1 cut(s) 159
Hin1II CATG 1 cut(s) 295
HinfI GANTC 1 cut(s) 270
Hpy166II GTNNAC 1 cut(s) 325
Hpy188III TCNNGA 3 cut(s) 95, 274, 292
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 2 cut(s) 257, 357
HpyCH4V TGCA 4 cut(s) 55, 192, 248, 307
HpyF3I CTNAG 2 cut(s) 260, 266
Hsp92II CATG 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 2 cut(s) 121, 247
LweI GCATC 3 cut(s) 191, 235, 257
MaeI CTAG 1 cut(s) 159
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MluCI AATT 4 cut(s) 40, 47, 223, 311
MlyI GAGTC 1 cut(s) 279
MnlI CCTC 1 cut(s) 137
Mph1103I ATGCAT 2 cut(s) 57, 250
MslI CAYNNNNRTG 2 cut(s) 187, 290
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 295
NlaIV GGNNCC 1 cut(s) 172
NsiI ATGCAT 2 cut(s) 57, 250
PaeR7I CTCGAG 1 cut(s) 93
PagI TCATGA 1 cut(s) 291
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 172
RseI CAYNNNNRTG 2 cut(s) 187, 290
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 1 cut(s) 279
SetI ASST 3 cut(s) 110, 160, 239
SfaNI GCATC 3 cut(s) 191, 235, 257
SfcI CTRYAG 1 cut(s) 318
Sfr274I CTCGAG 1 cut(s) 93
SlaI CTCGAG 1 cut(s) 93
SmiMI CAYNNNNRTG 2 cut(s) 187, 290
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
Sse9I AATT 4 cut(s) 40, 47, 223, 311
SspMI CTAG 1 cut(s) 159
TaaI ACNGT 2 cut(s) 257, 357
TaqI TCGA 1 cut(s) 94
TasI AATT 4 cut(s) 40, 47, 223, 311
TscAI CASTG 1 cut(s) 260
TspDTI ATGAA 2 cut(s) 280, 308
TspRI CASTG 1 cut(s) 260
XapI RAATTY 1 cut(s) 223
XhoI CTCGAG 1 cut(s) 93
XmiI GTMKAC 1 cut(s) 324
XspI CTAG 1 cut(s) 159
Zsp2I ATGCAT 2 cut(s) 57, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.