Rmu_sc0000453.1_g000018

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000453.1
OG0000976
Physical Location & Seq
Forward (+)
59131 .. 59631
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000453.1_g000018.1.cds

Sequence Viewer

Length: 501 bp
atgcttagagcggaaaaactctatgaactctatgatgaagcagaatcatgcgaaaatcctgaacgattagaaaaactaatcaaagaaatgaaaattttcaaaccaggaagggaaagaaaaatccttccctatcaagatattgaaatggaagatggagatacctccaaaactttcatcattagagaaaagggaaaactaaaacttcctgtacaggcagcccctacgggcagaaaagaagaaagaaattctcaaaaatttgtcccagaggacaatatgcctagagtaccaatcatgaactatggcatctggctaaatctagacaaagctctatataaaagaaaagctattgaccaatgggtagatagcctgatgatggcctctgctctcacccttggaaaatttgaagcaccagatcttcaggtgtactatgaaactactctcaccggagtagcaaaaaaatattatttgtctttcaaagagactgccagagggagagactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

19.44

Weight (kDa)

8.47

Isoelectric Point (pI)

32.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 11
AciI CCGC 1 cut(s) 11
AcsI RAATTY 4 cut(s) 93, 244, 254, 398
AcuI CTGAAG 1 cut(s) 401
AfaI GTAC 3 cut(s) 210, 285, 425
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 4 cut(s) 100, 143, 404, 475
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 2 cut(s) 326, 344
AluI AGCT 2 cut(s) 326, 344
Alw26I GTCTC 2 cut(s) 473, 489
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 4 cut(s) 93, 244, 254, 398
Asp700I GAANNNNTTC 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 379, 433
BbvI GCAGC 1 cut(s) 227
BccI CCATC 2 cut(s) 146, 367
BciT130I CCWGG 1 cut(s) 105
BcoDI GTCTC 2 cut(s) 473, 489
BfaI CTAG 2 cut(s) 279, 317
BglII AGATCT 1 cut(s) 412
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 391
BsaWI WCCGGW 1 cut(s) 443
Bsc4I CCNNNNNNNGG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 391
BseLI CCNNNNNNNGG 1 cut(s) 373
BseXI GCAGC 1 cut(s) 227
BshFI GGCC 1 cut(s) 377
BsiSI CCGG 1 cut(s) 444
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 2 cut(s) 473, 489
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 1 cut(s) 377
Bsp1407I TGTACA 1 cut(s) 208
Bsp143I GATC 1 cut(s) 412
BspACI CCGC 1 cut(s) 11
BspANI GGCC 1 cut(s) 377
BspHI TCATGA 1 cut(s) 291
BsrBI CCGCTC 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 391
BssMI GATC 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 5
BstKTI GATC 1 cut(s) 415
BstMAI GTCTC 2 cut(s) 473, 489
BstMBI GATC 1 cut(s) 412
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BsuRI GGCC 1 cut(s) 377
CciI TCATGA 1 cut(s) 291
Csp6I GTAC 3 cut(s) 209, 284, 424
CviAII CATG 2 cut(s) 48, 292
CviJI RGCY 6 cut(s) 218, 310, 326, 344, 366, 377
CviKI_1 RGCY 6 cut(s) 218, 310, 326, 344, 366, 377
CviQI GTAC 3 cut(s) 209, 284, 424
DdeI CTNAG 1 cut(s) 5
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
Eco130I CCWWGG 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 401
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 391
FaeI CATG 2 cut(s) 51, 295
FaiI YATR 9 cut(s) 24, 33, 49, 275, 293, 300, 331, 333, 429
FaqI GGGAC 1 cut(s) 245
FatI CATG 2 cut(s) 47, 291
Fnu4HI GCNGC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 2 cut(s) 279, 317
GluI GCNGC 1 cut(s) 216
HaeIII GGCC 1 cut(s) 377
HapII CCGG 1 cut(s) 444
Hin1II CATG 2 cut(s) 51, 295
HinfI GANTC 1 cut(s) 44
HpaII CCGG 1 cut(s) 444
HphI GGTGA 2 cut(s) 379, 433
Hpy166II GTNNAC 1 cut(s) 424
Hpy188III TCNNGA 4 cut(s) 59, 134, 292, 317
Hpy8I GTNNAC 1 cut(s) 424
HpyAV CCTTC 2 cut(s) 102, 134
HpyF3I CTNAG 1 cut(s) 5
Hsp92II CATG 2 cut(s) 51, 295
Kzo9I GATC 1 cut(s) 412
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 1 cut(s) 312
MaeI CTAG 2 cut(s) 279, 317
MalI GATC 1 cut(s) 414
MbiI CCGCTC 1 cut(s) 11
MboI GATC 1 cut(s) 412
MboII GAAGA 3 cut(s) 161, 248, 407
MflI RGATCY 1 cut(s) 412
MluCI AATT 4 cut(s) 93, 244, 254, 398
MnlI CCTC 4 cut(s) 172, 259, 388, 482
MroXI GAANNNNTTC 1 cut(s) 95
MspI CCGG 1 cut(s) 444
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
NdeII GATC 1 cut(s) 412
NlaIII CATG 2 cut(s) 51, 295
PagI TCATGA 1 cut(s) 291
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 3 cut(s) 210, 285, 425
RsaNI GTAC 3 cut(s) 209, 284, 424
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 412
ScrFI CCNGG 1 cut(s) 105
SetI ASST 4 cut(s) 164, 328, 346, 423
SfaNI GCATC 1 cut(s) 312
Sse9I AATT 4 cut(s) 93, 244, 254, 398
SsiI CCGC 1 cut(s) 11
SspI AATATT 1 cut(s) 461
SspMI CTAG 2 cut(s) 279, 317
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 1 cut(s) 391
TasI AATT 4 cut(s) 93, 244, 254, 398
TatI WGTACW 2 cut(s) 208, 423
TfiI GAWTC 1 cut(s) 44
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 6 cut(s) 39, 51, 104, 163, 308, 444
XapI RAATTY 4 cut(s) 93, 244, 254, 398
XbaI TCTAGA 1 cut(s) 316
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 2 cut(s) 279, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.