Rmu_sc0011611.1_g000004

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011611.1
OG0000976
Physical Location & Seq
Reverse (-)
8381 .. 9280
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011611.1_g000004.1.cds

Sequence Viewer

Length: 900 bp
atgcatattggagcagtccaagtaggcataaatctgcttgcgcaagaaggcatagactgttcggttctatgtgttctacaatacaatagattaacagacttccgagctagtctgttgggaacgcttgaagaatctctatgtgatcaagtagcatatttcaactgcttcccaaatttcaaaaccagcttgaaagatgcagctcactgtctacgactgagaggcaagacagatgacatatcaatgaaagaagatatgcaagaactcgcaatagtatacagaatatactataaattgatgagcactacagtagcccccaagaccagaataacaaatattccgggtcttactactggcttcctcaccaatcagaagaaccattcacaacatattcacaaagttatttggaatgaagtgacttttcctcttgaatggaaattatacgatccaaaaaagctaccggaaagagcgaaagcaaaaatttatgaaagtagaaagactggagaaatcagtctcaattttgacaatcacataaaaagtgatgtctgtcctgataacctcaggataaacaagaatctcctcagaagaagttatagcactagggaagctagtgttagtggtacaaaacccactattgaagaaccaatatcggaagaagaattgaaagctgatctaaacagaccagttaatatgttcagagcagaaaagctctatgaactttatgaagaagcagaatcttgcgaaaatcctgaacgattagaaaaactaatcgaagaaatgaaagaattcaaaatcagaaagacgagaaaagtctttccttatcaagatattgaaatggaagaaggagaaagctccagaactttcattagcagagaaaaagggaaagtaaaactcccagtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

299

Amino Acids

34.68

Weight (kDa)

7.57

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 42
AccI GTMKAC 2 cut(s) 208, 273
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 3 cut(s) 172, 477, 782
AfaI GTAC 1 cut(s) 619
AgsI TTSAA 9 cut(s) 128, 160, 178, 190, 428, 635, 661, 787, 830
AluBI AGCT 8 cut(s) 107, 186, 200, 454, 605, 665, 706, 849
AluI AGCT 8 cut(s) 107, 186, 200, 454, 605, 665, 706, 849
Alw21I GWGCWC 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 515
AlwI GGATC 1 cut(s) 437
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 3 cut(s) 172, 477, 782
Asp700I GAANNNNTTC 1 cut(s) 782
AspLEI GCGC 1 cut(s) 43
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 352
AxyI CCTNAGG 1 cut(s) 557
Bbv12I GWGCWC 1 cut(s) 302
BbvI GCAGC 1 cut(s) 209
BclI TGATCA 1 cut(s) 142
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 1 cut(s) 515
BfaI CTAG 3 cut(s) 108, 597, 606
BfmI CTRYAG 1 cut(s) 303
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 339
BmrFI CCNGG 1 cut(s) 339
BmrI ACTGGG 1 cut(s) 887
BmsI GCATC 1 cut(s) 184
BmuI ACTGGG 1 cut(s) 887
BpmI CTGGAG 2 cut(s) 519, 835
BpuMI CCSGG 1 cut(s) 339
BsaWI WCCGGW 1 cut(s) 457
Bse1I ACTGG 4 cut(s) 355, 502, 680, 893
Bse21I CCTNAGG 1 cut(s) 557
BseMII CTCAG 3 cut(s) 206, 571, 592
BseNI ACTGG 4 cut(s) 355, 502, 680, 893
BseRI GAGGAG 1 cut(s) 566
BseXI GCAGC 1 cut(s) 209
BsiHKAI GWGCWC 1 cut(s) 302
BsiSI CCGG 2 cut(s) 338, 458
BsmAI GTCTC 1 cut(s) 515
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 3 cut(s) 142, 442, 667
BspCNI CTCAG 3 cut(s) 207, 570, 591
BspPI GGATC 1 cut(s) 437
BsrI ACTGG 4 cut(s) 355, 502, 680, 893
BssMI GATC 3 cut(s) 142, 442, 667
BssNAI GTATAC 1 cut(s) 274
Bst1107I GTATAC 1 cut(s) 274
Bst4CI ACNGT 3 cut(s) 59, 206, 307
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 3 cut(s) 215, 557, 578
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 3 cut(s) 145, 445, 670
BstMAI GTCTC 1 cut(s) 515
BstMBI GATC 3 cut(s) 142, 442, 667
BstSCI CCNGG 1 cut(s) 337
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 209
BstZ17I GTATAC 1 cut(s) 274
Bsu36I CCTNAGG 1 cut(s) 557
BtsIMutI CAGTG 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 618
CviQI GTAC 1 cut(s) 618
DdeI CTNAG 3 cut(s) 215, 557, 578
DpnI GATC 3 cut(s) 144, 444, 669
DpnII GATC 3 cut(s) 142, 442, 667
Eco81I CCTNAGG 1 cut(s) 557
EcoRI GAATTC 1 cut(s) 782
EcoT22I ATGCAT 1 cut(s) 6
FbaI TGATCA 1 cut(s) 142
FblI GTMKAC 2 cut(s) 208, 273
Fnu4HI GCNGC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 3 cut(s) 108, 597, 606
FspI TGCGCA 1 cut(s) 42
GlaI GCGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 198
GsuI CTGGAG 2 cut(s) 519, 835
HapII CCGG 2 cut(s) 338, 458
HhaI GCGC 1 cut(s) 43
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HinfI GANTC 3 cut(s) 131, 571, 731
HpaII CCGG 2 cut(s) 338, 458
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 2 cut(s) 209, 274
Hpy188I TCNGA 6 cut(s) 104, 369, 581, 649, 695, 794
Hpy188III TCNNGA 6 cut(s) 425, 548, 559, 746, 821, 852
Hpy8I GTNNAC 2 cut(s) 209, 274
HpyAV CCTTC 2 cut(s) 41, 833
HpyCH4III ACNGT 3 cut(s) 59, 206, 307
HpyCH4V TGCA 3 cut(s) 4, 197, 256
HpyF3I CTNAG 3 cut(s) 215, 557, 578
HspAI GCGC 1 cut(s) 41
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 3 cut(s) 142, 442, 667
LmnI GCTCC 2 cut(s) 11, 854
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 184
MaeI CTAG 3 cut(s) 108, 597, 606
MaeIII GTNAC 1 cut(s) 412
MalI GATC 3 cut(s) 144, 444, 669
MboI GATC 3 cut(s) 142, 442, 667
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 7 cut(s) 172, 290, 434, 477, 514, 656, 782
MnlI CCTC 5 cut(s) 212, 368, 432, 566, 587
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 782
MseI TTAA 2 cut(s) 92, 684
MslI CAYNNNNRTG 1 cut(s) 239
MspI CCGG 2 cut(s) 338, 458
MspR9I CCNGG 1 cut(s) 339
NciI CCSGG 1 cut(s) 339
NdeII GATC 3 cut(s) 142, 442, 667
NmuCI GTSAC 1 cut(s) 412
NsbI TGCGCA 1 cut(s) 42
NsiI ATGCAT 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 782
PfeI GAWTC 3 cut(s) 131, 571, 731
PkrI GCNGC 1 cut(s) 199
RsaI GTAC 1 cut(s) 619
RsaNI GTAC 1 cut(s) 618
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 2 cut(s) 92, 684
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 3 cut(s) 142, 442, 667
ScrFI CCNGG 1 cut(s) 339
SduI GDGCHC 1 cut(s) 302
SetI ASST 9 cut(s) 109, 188, 202, 456, 558, 607, 667, 708, 851
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 303
SmiMI CAYNNNNRTG 1 cut(s) 239
Sse9I AATT 7 cut(s) 172, 290, 434, 477, 514, 656, 782
SspI AATATT 1 cut(s) 334
SspMI CTAG 3 cut(s) 108, 597, 606
StyD4I CCNGG 1 cut(s) 337
TaaI ACNGT 3 cut(s) 59, 206, 307
TaqI TCGA 1 cut(s) 768
TasI AATT 7 cut(s) 172, 290, 434, 477, 514, 656, 782
TfiI GAWTC 3 cut(s) 131, 571, 731
Tru1I TTAA 2 cut(s) 92, 684
Tru9I TTAA 2 cut(s) 92, 684
TscAI CASTG 1 cut(s) 209
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 7 cut(s) 257, 423, 498, 726, 735, 791, 850
TspRI CASTG 1 cut(s) 209
XapI RAATTY 3 cut(s) 172, 477, 782
XmiI GTMKAC 2 cut(s) 208, 273
XmnI GAANNNNTTC 1 cut(s) 782
XspI CTAG 3 cut(s) 108, 597, 606
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.