Rmu_sc0013333.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013333.1
OG0000976
Physical Location & Seq
Forward (+)
1 .. 705
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013333.1_g000001.1.cds

Sequence Viewer

Length: 656 bp
atttccgagctagtctgttgggaacccttgaaacatctttatgtgatcaagtagcatatttcaactgcttcccaaattttaccaccagcttgaaggatgcagctcactgtctacgactgagagtcaagacatatggcatatctatgaaagaagatatgcaagaactcgcaatagtatacagaatatactataaattgatgagcattacagtagcccccaaaacaagaataacaaatattcctggtctgactactggctttctcaccaatcagaagaaccattcacaacagattcataaagttacttggaatgaagtgacttttcctcttgaatggaaattatccggtccaaaaaagccaccggaaagtgcgaaagcaataatttttgaaagtggaaagactgaagaaatcagtctcaattttgacaatcacagaaaaagtgatgtctgtcctgagagcctcagggtaaacatgaatcttctcagaagaagctatagcactagagaagctagtgttagtggtacaaaatccactattgaagaaccaatatctgaagaagaattagaagctgatctaaacagaccagtaaatatgttcaaagcagaaaagctctatgaactctatgaagaagcagaatcttgcgaaaatcctgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

217

Amino Acids

24.84

Weight (kDa)

5.93

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 111, 176
AcsI RAATTY 1 cut(s) 75
AcuI CTGAAG 2 cut(s) 422, 572
AfaI GTAC 1 cut(s) 522
AgsI TTSAA 7 cut(s) 31, 63, 93, 331, 388, 538, 597
AhdI GACNNNNNGTC 1 cut(s) 121
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 7 cut(s) 10, 89, 103, 491, 508, 568, 609
AluI AGCT 7 cut(s) 10, 89, 103, 491, 508, 568, 609
Alw26I GTCTC 1 cut(s) 418
ApeKI GCWGC 1 cut(s) 100
ApoI RAATTY 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 346
AsuHPI GGTGA 1 cut(s) 255
AvaII GGWCC 1 cut(s) 346
AxyI CCTNAGG 1 cut(s) 460
BbvI GCAGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 242
BclI TGATCA 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 418
BfaI CTAG 3 cut(s) 11, 500, 509
BfmI CTRYAG 1 cut(s) 492
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 346
BmeRI GACNNNNNGTC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 346
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 87
BsaWI WCCGGW 2 cut(s) 343, 360
Bse1I ACTGG 2 cut(s) 258, 583
Bse21I CCTNAGG 1 cut(s) 460
BseBI CCWGG 1 cut(s) 242
BseGI GGATG 1 cut(s) 102
BseMII CTCAG 4 cut(s) 109, 443, 474, 495
BseNI ACTGG 2 cut(s) 258, 583
BseXI GCAGC 1 cut(s) 112
BsiSI CCGG 2 cut(s) 344, 361
BsmAI GTCTC 1 cut(s) 418
Bsp143I GATC 2 cut(s) 45, 570
BspCNI CTCAG 4 cut(s) 110, 444, 473, 494
BspLI GGNNCC 1 cut(s) 24
BsrI ACTGG 2 cut(s) 258, 583
BssMI GATC 2 cut(s) 45, 570
BssNAI GTATAC 1 cut(s) 177
Bst1107I GTATAC 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 2 cut(s) 109, 210
BstDEI CTNAG 4 cut(s) 118, 452, 460, 481
BstF5I GGATG 1 cut(s) 102
BstKTI GATC 2 cut(s) 48, 573
BstMAI GTCTC 1 cut(s) 418
BstMBI GATC 2 cut(s) 45, 570
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 240
BstSFI CTRYAG 1 cut(s) 492
BstV1I GCAGC 1 cut(s) 112
BstZ17I GTATAC 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 460
BtsCI GGATG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 346
Csp6I GTAC 1 cut(s) 521
CviAII CATG 1 cut(s) 471
CviQI GTAC 1 cut(s) 521
DdeI CTNAG 4 cut(s) 118, 452, 460, 481
DpnI GATC 2 cut(s) 47, 572
DpnII GATC 2 cut(s) 45, 570
DriI GACNNNNNGTC 1 cut(s) 121
Eam1105I GACNNNNNGTC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 346
Eco57I CTGAAG 2 cut(s) 422, 572
Eco81I CCTNAGG 1 cut(s) 460
EcoRII CCWGG 1 cut(s) 240
FaeI CATG 1 cut(s) 474
FatI CATG 1 cut(s) 470
FauNDI CATATG 1 cut(s) 132
FbaI TGATCA 1 cut(s) 45
FblI GTMKAC 2 cut(s) 111, 176
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 101
FspBI CTAG 3 cut(s) 11, 500, 509
GluI GCNGC 1 cut(s) 101
HapII CCGG 2 cut(s) 344, 361
Hin1II CATG 1 cut(s) 474
HinfI GANTC 4 cut(s) 122, 291, 474, 634
HpaII CCGG 2 cut(s) 344, 361
HphI GGTGA 1 cut(s) 255
Hpy166II GTNNAC 3 cut(s) 112, 177, 468
Hpy188I TCNGA 5 cut(s) 7, 248, 272, 484, 552
Hpy188III TCNNGA 4 cut(s) 126, 328, 451, 649
Hpy8I GTNNAC 3 cut(s) 112, 177, 468
HpyAV CCTTC 1 cut(s) 87
HpyCH4III ACNGT 2 cut(s) 109, 210
HpyCH4V TGCA 2 cut(s) 100, 159
HpyF3I CTNAG 4 cut(s) 118, 452, 460, 481
Hsp92II CATG 1 cut(s) 474
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 2 cut(s) 45, 570
LpnPI CCDG 9 cut(s) 99, 227, 239, 254, 357, 374, 447, 464, 596
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 1 cut(s) 87
MaeI CTAG 3 cut(s) 11, 500, 509
MaeIII GTNAC 2 cut(s) 300, 315
MalI GATC 2 cut(s) 47, 572
MboI GATC 2 cut(s) 45, 570
MboII GAAGA 9 cut(s) 163, 285, 415, 469, 497, 550, 565, 568, 637
MluCI AATT 6 cut(s) 75, 193, 337, 380, 417, 559
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 2 cut(s) 335, 469
MslI CAYNNNNRTG 2 cut(s) 39, 142
MspI CCGG 2 cut(s) 344, 361
MspR9I CCNGG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 242
NdeI CATATG 1 cut(s) 132
NdeII GATC 2 cut(s) 45, 570
NlaIII CATG 1 cut(s) 474
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 1 cut(s) 315
PfeI GAWTC 3 cut(s) 291, 474, 634
PkrI GCNGC 1 cut(s) 102
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 24
PspPI GGNCC 1 cut(s) 346
RsaI GTAC 1 cut(s) 522
RsaNI GTAC 1 cut(s) 521
RseI CAYNNNNRTG 2 cut(s) 39, 142
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 2 cut(s) 45, 570
Sau96I GGNCC 1 cut(s) 346
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 242
SetI ASST 7 cut(s) 12, 91, 105, 493, 510, 570, 611
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 1 cut(s) 492
SinI GGWCC 1 cut(s) 346
SmiMI CAYNNNNRTG 2 cut(s) 39, 142
Sse9I AATT 6 cut(s) 75, 193, 337, 380, 417, 559
SspI AATATT 1 cut(s) 237
SspMI CTAG 3 cut(s) 11, 500, 509
StyD4I CCNGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 109, 210
TasI AATT 6 cut(s) 75, 193, 337, 380, 417, 559
TfiI GAWTC 3 cut(s) 291, 474, 634
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 315
TspDTI ATGAA 6 cut(s) 160, 283, 326, 487, 629, 638
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 346
XapI RAATTY 1 cut(s) 75
XmiI GTMKAC 2 cut(s) 111, 176
XspI CTAG 3 cut(s) 11, 500, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.