Rw2G035730

T=7 icosahedral viral capsid

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000976
Physical Location & Seq
Forward (+)
58791573 .. 58792493
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G035730.1

Sequence Viewer

Length: 921 bp
ATGAAAGAATTCAAAATCAGAAAGACAAGAAAAGTCTTTCCTTATCAAGATATTGAAATGGAAGATGGAGAGAGCTCCAGAACTTTCATAAGCAGAGAAAAAAGAGAAATAAAACTCCCATTTCAGAAAGCCCCTACGGGCAAAAAAGGAGAAAGAAATTCCCAGAGATTTGTCCCAGAGGACAATCTGCCTAGAGTTCCTATCACGAACTATGGCATATGGTTGAATCTAGACAAGAGTCTAGATAAAAGAAAGACCATTGACCAATGGGTAGACAGCCTGATGATGGCTTCTGCACTTACCCTTGGCAAATTTGAAGCACCAGATTTGCAAGTGTACTATGAAACTACTCTCACTGGAGTGGCAAAAAAGTACTACCTATCTTTCAAGGAAACTGCCAGAGGAAGAGACTGGCTTGAAGAGATAAAAAATTCAAAATCTCCGTATGATTTTGCAGTACCCCTGTATGATCAATTCTGTGGAGATCTCTCAAATCTGAGTGAGAAAGCCAAAGAAGCGGCAAAGTCAAATATCTATGCACTCAAAATCTGTGACATGAGATATTTTGAAGAATACTTGAATGAATTTCAAGAATATTACTGTACAATTGGTGAACTAGAGAATACTGATCTAGTTAATCTGTTGCACAGAAAGCTCCCTGAACCATGGAGAACAGCTGTGAGAGAAAGCATAGCTGAGAAACCAATTGAAAGATTTTCAGTTGGAGGAATTGCCGACAGAATCTGGCAATTACTGAAAGAGCAATGCAAAGCCAATCTTAGAGCTAAGATGGCTAAGAAGCAACTCAAAGGAGTTGAAAATTTCTGTTACGGAATACTGGATATACCCACAAACTGGGGATGTCATGAGTCCAAGTTCCATAGAAAAAAGAAAAAAGAAAAAAGAAAAATATTACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

36.0

Weight (kDa)

9.22

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Caulimovir_coat_dom PF22909 171 - 278 7.1e-10 Caulimovirus coat protein, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000976)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24112 FvH4_4g10003
rosa_chinensis RchiOBHm_Chr3g0487531 RchiOBHm_Chr5g0034781 RchiOBHm_Chr6g0277631
rosa_laevigata RLG00000021184
rosa_multiflora Rmu_sc0000144.1_g000006 Rmu_sc0000161.1_g000054 Rmu_sc0000383.1_g000008 Rmu_sc0000420.1_g000038 Rmu_sc0000429.1_g000090 Rmu_sc0000429.1_g000091 Rmu_sc0000453.1_g000018 Rmu_sc0000458.1_g000020 Rmu_sc0000483.1_g000003 Rmu_sc0000531.1_g000007 Rmu_sc0000595.1_g000055 Rmu_sc0000768.1_g000022 Rmu_sc0000855.1_g000012 Rmu_sc0000974.1_g000020 Rmu_sc0001018.1_g000020 Rmu_sc0001265.1_g000003 Rmu_sc0001407.1_g000004 Rmu_sc0001694.1_g000007 Rmu_sc0001785.1_g000004 Rmu_sc0001847.1_g000011 Rmu_sc0002148.1_g000003 Rmu_sc0002316.1_g000089 Rmu_sc0002501.1_g000027 Rmu_sc0002521.1_g000031 Rmu_sc0002845.1_g000028 Rmu_sc0003315.1_g000022 Rmu_sc0003371.1_g000015 Rmu_sc0003386.1_g000006 Rmu_sc0003415.1_g000012 Rmu_sc0003467.1_g000010 Rmu_sc0003583.1_g000002 Rmu_sc0003832.1_g000032 Rmu_sc0004094.1_g000040 Rmu_sc0004286.1_g000014 Rmu_sc0004344.1_g000014 Rmu_sc0004798.1_g000005 Rmu_sc0004846.1_g000001 Rmu_sc0005362.1_g000001 Rmu_sc0005481.1_g000002 Rmu_sc0006498.1_g000005 Rmu_sc0006968.1_g000011 Rmu_sc0007369.1_g000004 Rmu_sc0007727.1_g000016 Rmu_sc0008681.1_g000002 Rmu_sc0010278.1_g000009 Rmu_sc0011015.1_g000002 Rmu_sc0011611.1_g000004 Rmu_sc0012216.1_g000005 Rmu_sc0013333.1_g000001 Rmu_sc0016916.1_g000001 Rmu_sc0024220.1_g000001 Rmu_sc0036248.1_g000001 Rmu_sc0037776.1_g000001 Rmu_ssc0000052.1_g000014
rosa_samantha Rh4CG090000
rosa_wichuraiana Rw2G035730 Rw5G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 855
AccI GTMKAC 1 cut(s) 273
AciI CCGC 1 cut(s) 518
AcsI RAATTY 6 cut(s) 8, 157, 311, 430, 584, 820
AfaI GTAC 4 cut(s) 338, 374, 459, 604
AfiI CCNNNNNNNGG 2 cut(s) 286, 855
AleI CACNNNNGTG 1 cut(s) 359
AluBI AGCT 5 cut(s) 75, 655, 677, 695, 785
AluI AGCT 5 cut(s) 75, 655, 677, 695, 785
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 402
AlwNI CAGNNNCTG 1 cut(s) 744
ApoI RAATTY 6 cut(s) 8, 157, 311, 430, 584, 820
Asp700I GAANNNNTTC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 623
BanII GRGCYC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 77
BccI CCATC 3 cut(s) 59, 280, 784
BclI TGATCA 1 cut(s) 469
BcoDI GTCTC 1 cut(s) 402
BfaI CTAG 5 cut(s) 192, 230, 242, 617, 632
BglII AGATCT 1 cut(s) 484
BisI GCNGC 1 cut(s) 519
BlsI GCNGC 1 cut(s) 520
BmcAI AGTACT 1 cut(s) 374
BmrI ACTGGG 1 cut(s) 865
BmuI ACTGGG 1 cut(s) 865
BoxI GACNNNNGTC 1 cut(s) 237
BpmI CTGGAG 2 cut(s) 61, 378
BsaJI CCNNGG 2 cut(s) 304, 665
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 855
Bse1I ACTGG 4 cut(s) 361, 416, 843, 860
Bse3DI GCAATG 1 cut(s) 770
BseDI CCNNGG 2 cut(s) 304, 665
BseGI GGATG 1 cut(s) 866
BseLI CCNNNNNNNGG 2 cut(s) 286, 855
BseMI GCAATG 1 cut(s) 770
BseMII CTCAG 2 cut(s) 488, 687
BseNI ACTGG 4 cut(s) 361, 416, 843, 860
BsgI GTGCAG 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 77
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 2 cut(s) 286, 855
BsmAI GTCTC 1 cut(s) 402
BsmFI GGGAC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 77
Bsp1407I TGTACA 1 cut(s) 602
Bsp143I GATC 3 cut(s) 469, 484, 628
Bsp19I CCATGG 1 cut(s) 665
BspACI CCGC 1 cut(s) 518
BspCNI CTCAG 2 cut(s) 489, 688
BspHI TCATGA 1 cut(s) 865
BsrDI GCAATG 1 cut(s) 770
BsrGI TGTACA 1 cut(s) 602
BsrI ACTGG 4 cut(s) 361, 416, 843, 860
BssECI CCNNGG 2 cut(s) 304, 665
BssMI GATC 3 cut(s) 469, 484, 628
BssT1I CCWWGG 2 cut(s) 304, 665
Bst4CI ACNGT 1 cut(s) 602
Bst6I CTCTTC 2 cut(s) 400, 414
BstAUI TGTACA 1 cut(s) 602
BstDEI CTNAG 5 cut(s) 497, 696, 779, 786, 795
BstDSI CCRYGG 1 cut(s) 665
BstF5I GGATG 1 cut(s) 866
BstKTI GATC 3 cut(s) 472, 487, 631
BstMAI GTCTC 1 cut(s) 402
BstMBI GATC 3 cut(s) 469, 484, 628
BstMWI GCNNNNNNNGC 3 cut(s) 515, 652, 791
BstPAI GACNNNNGTC 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BtgI CCRYGG 1 cut(s) 665
BtsCI GGATG 1 cut(s) 866
BtsIMutI CAGTG 1 cut(s) 354
CaiI CAGNNNCTG 1 cut(s) 744
CciI TCATGA 1 cut(s) 865
Csp6I GTAC 4 cut(s) 337, 373, 458, 603
CviAII CATG 3 cut(s) 556, 666, 866
CviQI GTAC 4 cut(s) 337, 373, 458, 603
DdeI CTNAG 5 cut(s) 497, 696, 779, 786, 795
DpnI GATC 3 cut(s) 471, 486, 630
DpnII GATC 3 cut(s) 469, 484, 628
Eam1104I CTCTTC 2 cut(s) 400, 414
EarI CTCTTC 2 cut(s) 400, 414
Ecl136II GAGCTC 1 cut(s) 75
Eco130I CCWWGG 2 cut(s) 304, 665
Eco24I GRGCYC 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 75
EcoICRI GAGCTC 1 cut(s) 75
EcoRI GAATTC 1 cut(s) 8
EcoT14I CCWWGG 2 cut(s) 304, 665
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 2 cut(s) 304, 665
FaeI CATG 3 cut(s) 559, 669, 869
FalI AAGNNNNNCTT 2 cut(s) 762, 794
FaqI GGGAC 1 cut(s) 158
FatI CATG 3 cut(s) 555, 665, 865
FauNDI CATATG 1 cut(s) 218
FbaI TGATCA 1 cut(s) 469
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 519
FokI GGATG 1 cut(s) 873
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 519
FspBI CTAG 5 cut(s) 192, 230, 242, 617, 632
GluI GCNGC 1 cut(s) 519
GsuI CTGGAG 2 cut(s) 61, 378
Hin1II CATG 3 cut(s) 559, 669, 869
HinfI GANTC 4 cut(s) 226, 238, 741, 869
HphI GGTGA 1 cut(s) 623
Hpy166II GTNNAC 3 cut(s) 274, 337, 614
Hpy188I TCNGA 3 cut(s) 20, 126, 498
Hpy188III TCNNGA 7 cut(s) 47, 78, 205, 230, 242, 590, 866
Hpy8I GTNNAC 3 cut(s) 274, 337, 614
HpyCH4III ACNGT 1 cut(s) 602
HpyCH4V TGCA 6 cut(s) 296, 331, 455, 539, 646, 768
HpyF10VI GCNNNNNNNGC 3 cut(s) 515, 652, 791
HpyF3I CTNAG 5 cut(s) 497, 696, 779, 786, 795
Hsp92II CATG 3 cut(s) 559, 669, 869
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 3 cut(s) 469, 484, 628
LmnI GCTCC 2 cut(s) 80, 660
MaeI CTAG 5 cut(s) 192, 230, 242, 617, 632
MaeIII GTNAC 2 cut(s) 551, 827
MalI GATC 3 cut(s) 471, 486, 630
MboI GATC 3 cut(s) 469, 484, 628
MboII GAAGA 4 cut(s) 74, 417, 431, 581
MfeI CAATTG 2 cut(s) 606, 705
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 1 cut(s) 77
MlyI GAGTC 2 cut(s) 247, 878
MmeI TCCRAC 1 cut(s) 703
MnlI CCTC 3 cut(s) 172, 395, 719
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 636
MslI CAYNNNNRTG 1 cut(s) 359
MspA1I CMGCKG 1 cut(s) 677
MunI CAATTG 2 cut(s) 606, 705
MwoI GCNNNNNNNGC 3 cut(s) 515, 652, 791
NcoI CCATGG 1 cut(s) 665
NdeI CATATG 1 cut(s) 218
NdeII GATC 3 cut(s) 469, 484, 628
NlaIII CATG 3 cut(s) 559, 669, 869
NmuCI GTSAC 1 cut(s) 551
OliI CACNNNNGTG 1 cut(s) 359
PagI TCATGA 1 cut(s) 865
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 226, 741
PflMI CCANNNNNTGG 1 cut(s) 855
PkrI GCNGC 1 cut(s) 520
PleI GAGTC 2 cut(s) 246, 877
PpsI GAGTC 2 cut(s) 246, 877
PshAI GACNNNNGTC 1 cut(s) 237
Psp124BI GAGCTC 1 cut(s) 77
PstNI CAGNNNCTG 1 cut(s) 744
PsuI RGATCY 1 cut(s) 484
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 4 cut(s) 338, 374, 459, 604
RsaNI GTAC 4 cut(s) 337, 373, 458, 603
RseI CAYNNNNRTG 1 cut(s) 359
SacI GAGCTC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 1 cut(s) 519
Sau3AI GATC 3 cut(s) 469, 484, 628
ScaI AGTACT 1 cut(s) 374
SchI GAGTC 2 cut(s) 247, 878
SduI GDGCHC 1 cut(s) 77
SetI ASST 6 cut(s) 77, 381, 657, 679, 697, 787
SmiMI CAYNNNNRTG 1 cut(s) 359
SsiI CCGC 1 cut(s) 518
SspI AATATT 2 cut(s) 596, 912
SspMI CTAG 5 cut(s) 192, 230, 242, 617, 632
SstI GAGCTC 1 cut(s) 77
StyI CCWWGG 2 cut(s) 304, 665
TaaI ACNGT 1 cut(s) 602
TatI WGTACW 3 cut(s) 336, 372, 602
TauI GCSGC 1 cut(s) 521
TfiI GAWTC 2 cut(s) 226, 741
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 1 cut(s) 551
Tsp45I GTSAC 1 cut(s) 551
TspDTI ATGAA 4 cut(s) 17, 76, 357, 597
TspGWI ACGGA 2 cut(s) 432, 846
TspRI CASTG 1 cut(s) 361
Van91I CCANNNNNTGG 1 cut(s) 855
XapI RAATTY 6 cut(s) 8, 157, 311, 430, 584, 820
XbaI TCTAGA 2 cut(s) 229, 241
XmiI GTMKAC 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 5 cut(s) 192, 230, 242, 617, 632
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.